LOC110534111 (LOC106603040)


Basic Information

Item Value
gene id LOC110534111
gene name LOC106603040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46916136 ~ 46962543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618784.2
ATTAGGCTACTCGGGGGccaatcacaacacagctctgtgtTTGAGCTGCACCATACAGTCTGACTATtctattttcaagtcttgcaagCGCAATTGAGGACCGACGACGCAAGGCGACATAAGTGCAATTGAGAATGATTCTAAACAAATTCAGCCTCTGGGTCGCTTAAGCTTTCGGAAACTTTGGAGGGACATTTTTCTGAAAAGACCGCGGAACGCTTGCAGTGTGTGATGCACAGTATTTGGGCTAACCTATTCTTGACCACTCGTCTAATTATAATATAACTGTAATTTATTTTACTGCAAGTCCTCTCTTTGAAAAAAAACGCGACAGCTGCAAACGTTGCATCCCTGCGAGTCCAGGTTTGGGAATTGTCACACATTTGCGAGAATCGGCTTGGCTTATTCACTCAGTCGATCCTGGGACATACGCGGTGTGGCTGGATGTTGCATGCGGGTCAATGAGCGCGAGGACAAAGTGCCTCCGAAGTCCCCAACTCCCCGACCTCTCTTACCTGATGCCGTGCATGATGATTGTCCTTGGAATACTTCTGAATGTCCTCAGTCATGGTAGTGTGCTGGCTGGCTCCATAGACTGTCTGGAGGCGGAGCGGGGCTGTGTGCAGGATGAGGGCTGTATGGGGGTGTACAGGGTGCTAGAGTACTGTGCTGCTGAGGAGGCTGTGTCGCCCCTGGGCCCAGACGCCCGACGTGAGTGCCTGGAGGCCCAGAGCGCCCTGCAGCACTACCACCCCCTCCAGGCCTGCAAGTGTCAGCGCGGCTCCCGCCGGGAGGAGCTCTGCCTCAGGGTCTACTGGACCGTCAGATTCGCTGTGTACGATGAGAACGAGGTGTCTCCGTATGAGGATCTGGAGTTGGAGTTTGTGAGGCACATAGAGATGTCACGCATGGCCTCCATCATGGCAGcttCCTCTCTGCCTCTGGATGGGCAGAACCAGTGTTTGAAGGCAGCCCAGGACTGTGGTCTGTATGAGAAGTGTGGTTCTCTGAGGTCGGAGTATGTTGTGTCCTGCACCAAGCGGCCACCGGGCTCCGACGGCAGCTGTAACAGACAGAAGTGCCACCGAGCGCTGCGACGCTTCCTGGAGCGGGTACCAGAGGAGTACAGCTTTGCCCTGCTCTTCTGCCCCTGCTCCGATGCCCTCTGTGGGGAGCGCCGGCGGAAGACCATCGTACCCTCGTGTTCCTATGAGGAGAGAGACGGCAAGCCCAACTGCCTCAGCCTGCAGGGCTACTGTGCCAGGGACAAGCTGTGTAGatcTCGGCTGGCTGATTTCCAGCACAACTGCCAGCCCTCGTCCCATTCTCCCTCTGGCTGCATGAGAGAGAGTGGAGCCGTCTGCCTTAAGGCCTACGCAGGACTCATAGGCACCATCATGACCCCCAACTACGTGAACAATATCAGTATGGACGTGTCCCAGTGGTGCAGCTGTGAGGGAAGTGGGAACCAGTGGCAGGACTGTCTGCGCGTCCTGCACATGTTTGACAGCAACGTCTGTCTGCGTAATGCTATCAGTTATTTGGGTGGCTCTTCCCCTCGCCCTGTGGAGAGCACTACTCTGCCACCTCGTCGCCACGCATCTGCCACCCCCTCCCCCCGCATCTTTCAGGACAAGATCAATGTCAACGTTTTATCAGAACGCAACAGTgtggaaGACactgaagaggaagaagaggaggaaagtcaGGAATTCAACGTTATCCCTCAATATTCTGAGAAGGAGAAGTCTAGTGTGGGCTCCGGGGCCCGAGGGGGCCATAGAGGAGCGGCAGGCCAAACAGTACCCATGctgcctctgctgctgctgctgctgcccgctGCCATGCTGGGCTGGGGGTGTCAGGGTTAACGAGCCCCCCCCTACTACCTCCCTTACGCTCAGCTACGGTATCACATTCACTGGGTCACCTCCACCATGGCAATGAGATAGAATGGACTGATGGGGAGACTTAAGGCTGAGGGAAGAACGACCACAAGGAGGAAATTGACATTTCTTCTGTTATACATTACTTGCTGTATTTCTGTTTTCCTTTCTTACTTTCCAACGACTGGTCCTTTTCTGTATTCTCTATCtttcctctcctgctctgtctaCTTGCGATCTGTTTAAGTAGTCATAGCTGCCCATCTCTTTGCTCCTCTCTCACGTAAGTAGACGTAGTTGAACAACCTGGGCTGATAAATAAGTCGATGGCTGAATTAATAAGGTCTGTCTGGATGAATCGATATGGCTGTCTGTCCGGTGCCTGTCTCAAGATTGGCTATCCAGCTCCACTCTCCCTCTTCATGAGGAGCTCATCGCCCAAGGCCAGTAACAGCACCTATCTCCAAGAAAACATGACCAGTGATTGGTGGAACCATGACAGTTCATTCCTTTGATTTTTGTGCCATGCCTCACCTCgctttttttctttctccttcGTTAACTTCCTTTCTTTCATCATCCCCTTGGATACGAGGGTTGTTGGGCAAGCCACTCTGTGCTAAACCATAGAGACCTCTGTTGCACTTCCTTCCTGTCTCTTATGTTGCTCTCCTTGTTTGCACCCTCTTCACCACCTCAGACTAGATGCCACTGACCTCTCCAGTTTGTACACCACTTATTCTCAGCCTTGTGGAGGAGATCTGAGAAACCCACCACAGGCACAATAATTATACCAAATTTGAATGATGACAACGGCAGAGGAAAACAACATAAGCAATAAAACATGAAATCAGATGGCTCTACGGGCAGGTGCTGGGGCCGTCTGGATTTGAGCTCAGGGGAGAGAGGAACCAATTTGCTGCTGTCTGTAGTTCACAAGTGCTTTCTATCCCTAGGTGTTGTTATAGTTTTGGAGAGACAATATCACACTTAGCTATACCTTTTCTGCCTGTGTTTGAGTAGGAGGAGATAGGGAGGGCGGAGAGGGGGCACTATAGAGCCTCTGGCAGCTCTGATCATTGAGCATCACAATTGAGCCTCTAAATCTTTTGCTGatgttaatgttttttttttttctcgtttTTTTTCTTTGCATCCCTCATTTTCTTGTGAACTTGCAAAATGAACTCCCACCTGAGGGGAAGTAGGTAAAGGGGTGTGGGTGGTGGTTAAAGGGGGGAACCACTCTACTGTGGAATTGTGTACGTGACTTGTATTCATCGACTTCTTTCCGTTCTAGAGGGAGATGTTAGACCTGACTCGTGCTCTCACCGATAATACATGATGCTAAAAAGAGAGAAATATTTACAGGGCATATATTTGTGCTGCAGCTCTTCACATCATCGGCCACCAGTGAGGGGAGTCGCTGGGACTTCATTCGGAGTATTAATTAAGCAGGCACGATGGCATCCGTACAGTCTAACACCATCTCCAATCTGGACAGTGGCGTTCATGACGACCGCTGTTCTTTTTTTAATAGGCACTGTCATCTCTCACTGCCTGGCAAGGGATCCTTATGCTAGTGATCATCAAAGTGAGTGACCGCACAAGAGATGACGTGAGAGCGACGAGCCTTGATTTACACACTGAAACAGCTTAAATAAATATGAGCGTAAGCCATACGAGCGAACAGCAAGAGGGAACGAGCGTGCCAACTCTAAATGTATCACGTTGGTTTTGTTTGTACAGCTGTATTCACACATATTTCCCCCATGGCCAAAATGGTTTTAATAATATCCAATGACGTTAGTGCTGACGTTTAGTGCTGACCCATGAGGGCGCTTCTTGAGGTCTGTTCGGTTTCGATtcgattatttaaaaaataatcaggGTTTTCGATTTCGGTTTCaaatcttcttctttttttttaccccattAAATGCACCACGCACTATGTGGGTTGAATtctgtaacacagaataaaaaaGTGAAAGTCCCATGGTGGTAGTGACTGTCCGTTACTGCtcatcacttattaaccatcatttattcacattactttgcTTTAATACAATATTTTGTTTTATTCGATggttttattatttcattccacgtcatcatctcatctctgtagAGCTGccgcctatgctgtctgacaaaatcactattttagtcattcttcaaagtaaataaggcaaaCTTATGACTTCTGATtgccaactatcaatcacttaaatcatgtattttctgcTTTCTGCAACTGCTTTCTATCCATCTCGTACGTCCTCTCTTCTCTCCGGCTCCATTATCGAGGTCTCCGTGTGGAATAtagtcattgtagttaattgccACATATTTctgcgctaaactatgtagaatattatcctgttggaaactacaactccctactacaatCCCACAGTTTGCGCTTGATATGATCTATTTCTACAGAAACTTAGCAATGTGCTCACAGAAAAAAAAGGAACTAAATGAAATTCATCACTGAGAACTAAAATATGTCTTGTGATCGATTACTGGAGTTGCAGAGTTGATATAAGTAAAtccacagagaaagggagaggtaaGAGGGAGCGAATGAAAAAGGTGCGACAGTGGGGGATTTGGGAAAGATGGGGAGAGTGACAGGCgtagatgcagagagagagagagagagagagaaagcaagggctCTTAAAAGCTTTCAGTAGCATTGCTGTTGTAGTCAGGCCCTCTCAGATTTATTTTGATGCCTGTGGCTAAGAGGCGAGTGTCTGTTCCACTCTATTACTCCTGTGCTTTAACGTCCTGAACTGTGTGCCTCCACCTCAGTTTGGCCTCACAGACCGAGAACGCTACTCTCCCGTACATGCATTCCCATCACTCTCTGCCACCGTGTGTATTTTACAATCATCTGCTGCCCCTCACAGACAACATGCCTCTACATCTTCTACCCATTCCTCTTTTCTTTTTCACGTTGAATCAACAAACACTGTACCATCAACTACTTGTACAAAGCTTTATTTAATGGTATGCTTTAAACAGaaaatgtgtatatatttttgtgttttcttttctCTTGTTGTAATTATCATTGAGAGTGAGCTGTGCCATATAGGGCTGGATCTGCCCCGTTGGATCTTATGTATGCCTCTTGTAAGTGTATATGTACAGGTTATGGTCAAGcatctgtcagtctctctgtctgtttgtaacaGTGAAACACTGTTGTTCTGCGGTGTCCTGCTTGCGTTGACCTTGATATACATGTTGATGGTCATTTTTAGTATGGTATATGATGATCATCATGTTCCGCGTTAGAGTCACACTGCTCATTTACAAAGCCGATGCCACCAAGCCCCGTACAGTTGTGTAAAATTGGATTAGCTGTCTGAATCACACCACCTCTGAGAGTTGTTGAATGAACACTCTGTGGACATGGTGTAAGGCCACTTCTTGAAAGTGATCCTCAGTTGGCAAGCTGGTTAACACGTTCAACTTGAGGAGTTGCCGGCCTCTCTGCCAGCCCTCTAAAACAGTCTTGGGCTCTGTCCATTAGTATCAAAATGGTCGCCATTTAGAAAATGGACCCTTGTTATTTGTGGATGAGGCCAGTGAGAGACTTAGAAACTATCCAAGTAACATAGTAAGCGCATTGCACTGAACGTGCCTATGTAGACTTCAGTtggagaaaggaatgaaggaCACTACAGTGGGCTGAGTTTAACATAAAACAGCCACTGGATTCGGGGCGATTATCGATCCTTATTTTGACAATGAGTTATCTAGAACTTCAGAGTTCAGCAATGCCAAAATTTCCCAGCCATCTCCGCTGCTTTAAGCCACACAGTGCCCTCCTCATCCCTACCTGTGTCACACCATCCACCTTCATGGCCATGAGTTCCGCCGTGCCCTATTCATGCCTGATGGTGTGAGTTTACAATCAGGTGTGAGCACTGTGTGGTTCTCCATCAAATGTGAGAATTTACAATGCTGTGTGAAAAAGACTACATAcaataataaaaatgtaaaaaat

Function

NR:

description
GDNF family receptor alpha-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618784.2 True 5919 mRNA 0.47 8 46916136 46962543

Neighbor

gene id symbol gene type direction distance location
LOC110534110 LOC106603042 coding upstream 21145 46888000 ~ 46894991 (+)
LOC110534109 NA coding upstream 48532 46864047 ~ 46867604 (+)
LOC110534107 LOC106603045 coding upstream 116382 46765048 ~ 46799754 (+)
LOC110534106 LOC106603046 coding upstream 168410 46732876 ~ 46747726 (+)
LOC110534104 LOC106603047 coding upstream 185409 46721765 ~ 46730727 (+)
LOC110534113 LOC106603039 coding downstream 46806 47009349 ~ 47016212 (+)
LOC110533128 LOC106603037 coding downstream 68886 47031429 ~ 47034505 (+)
LOC110534117 UBE2D2 coding downstream 161326 47123869 ~ 47127973 (+)
LOC110511048 LOC106603033 coding downstream 169592 47132135 ~ 47151549 (+)
LOC110534120 LOC106563662 coding downstream 296698 47259241 ~ 47374572 (+)
G894519 NA non-coding upstream 18307 46896938 ~ 46897829 (+)
G894518 NA non-coding upstream 19317 46895870 ~ 46896819 (+)
G894561 NA non-coding upstream 34599 46881246 ~ 46881537 (+)
G894558 NA non-coding upstream 42136 46873589 ~ 46874000 (+)
G894512 NA non-coding upstream 74598 46799901 ~ 46841538 (+)
G895475 NA non-coding downstream 8910 46971453 ~ 46971807 (+)
G895487 NA non-coding downstream 22501 46985044 ~ 46985360 (+)
G895491 NA non-coding downstream 27559 46990102 ~ 46990544 (+)
G895492 NA non-coding downstream 28620 46991163 ~ 46991443 (+)
G895517 NA non-coding downstream 81451 47043994 ~ 47044294 (+)
G894437 LOC106603023 other upstream 215596 46627292 ~ 46700540 (+)
G894204 LOC100136012 other upstream 798193 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 1014325 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 1272580 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 1323827 45553481 ~ 45592329 (+)
G895515 NA other downstream 77971 47040514 ~ 47042783 (+)
G895652 LOC106603032 other downstream 240382 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 253864 47216407 ~ 47217071 (+)
G896043 NA other downstream 947173 47909716 ~ 47910975 (+)

Expression


Co-expression Network