LOC110534117 (UBE2D2)


Basic Information

Item Value
gene id LOC110534117
gene name UBE2D2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47123869 ~ 47127973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618795.2
accGTTTCCAGCGGATGTAGCGTGTCGCAAGCAGACGATTGCGTCACAGTCTACCGAGAAGTGATGCGGTGCCCACTTCCCACAGCTGCTAGGAGGAGCCGGGTGAAGCGCACTGTATTTCAGTTTCGCTAGGCTACTCCGATAGTCAGTCGCCGCATTGTACTGTAAAGACAACCATTTAAAAACTAATTTTAAACTCCGGGGGGTAAAATCTGGGTGGAGAGGCAATAATCGTTGTTTCGCAGAAGTAAACCGACCAGTACATTGACAGCGGCACGAACACAACAATGGCCCTGAAAAGAATTCATAAGGAGTTAAATGATTTGGCTCGTGACCCTCCAGCACAGTGCTCCGCAGGACCAGTGGGAGATGACATGTTTCACTGGCAAGCTACAATAATGGGACCTAATGACAGTCCGTATCAGGGCGGCGTGTTCTTCTTGACCATTCACTTCCCCACTGACTATCCCTTCAAACCACCAAAGGTTGCATTCACCACAAGAATCTACCACCCAAACATCAACAGCAATGGCAGCATCTGCTTGGACATCCTGAGATCGCAGTGGTCGCCAGCACTCACCATCTCCAAAGTCCTCCTGTCCATCTGCTCACTTCTCTGTGACCCAAACCCAGACGACCCACTAGTTCCTGAGATCGCCCGCATCTACAAGACCGACAGGGAAAAATACAACAGAATAGCCCGGGAATGGACACAGAAATATGCAATGTAGTCGCAAGGCATAACAGCAGATAATCTGCCTTTTTATATTCGAAGGCTTGGGGAGCTTTGAACGAAAAAGAGGGAAAAAGTCTTGTTGGTTTCCATTGGAGTGATTTCTTTGAGccacaccctccctctccctacgCACTTGACCTCCATTCTCCTGCCTCACCCCCTTCAACCTGTCCAGCTGCGGTGTTGTACATATTTCAGATTGCATATTGTATACCCCACTGTCTGTTTCTGCCACTATGTCCACCGGCACCCATGTAGGACCACTCTTATTTGATTCCAAGAAGCGTTCCTTCTCATTTTTTTATGAACCCAAGGTTTGCTTTCCCAAGATTGAgggatttgtatttttttttaaaaacttttttcttctttttttccctCTGTGCTTCCAGCTATCCTGTGAGATGATGGTAAGGGTGGGGAGAGATGGGACTTGGAGAGTGTTTTTGGCTATGATAAGAAATGACTTTCAATCTGTCACTATGGTTCTGGAAACCACTAGGGGACTTTTTTCTGTTTGGCTACGGTATGCCCAGGATCCCGCCTCAGCCCCACCACAATATTAATCACTGTCATTAAGATGATAGTTAAGTACCCGTGGACCCATCCGCACTGTATGAAGTGGGACAATAGAATAATGAGACGGCGATCTATTGATGGAAGTATCTGAATATAACTTCCAAATGACTGTTTTCCCTCAACTTAGTCAAATGATATACTCCTTGTTgtttttgctaaaaaaaaaatgtgtgcccTTTTAGATCGACCTTTGAGAGCCTTCATTATACAATTTTTCTCTCAATGGTGGAAAATCTGTCTTTTTTGGTGTAGGTCTGATTTGGAAACGGCCAATGTTAGGCACATAAGTTGGGTGGTACAAGTAGTTTGTGACTGAAATGGTATTAATGCAGCTTGATCGTCCATTTGATCTAGCCTGAAAGGACAAAGATTTGACATGAGTATTAAATCATGTTTGAAGGCAACTTCACAAGACAAGCTCTAAAATGTTTTAAGCAACAGTAGCACTAGATTAGACGAATATGATGAGAGTTGAACTGTACCCTCAAGTGGGCTAAGTTGAAGGAAACAATCTGATTGGGGTGTATTTTCAGttattttcataaaaaaaaaaaaaattgaactcATTATTCTGTCTTCTCACTTTGTATATTTGAGCAGCCATTGTTGACTTAGCTCCAATGACTCATTGGCTGGATCTCAGAACCCTGGACTCAAGGACTTGAGTTCCAGACCGACAAACTTCTGTATATTTAATTGCCCAGGAGCTCATGGAGCTTGTCTTAATTAAACTGTGTAATAAACATGATTATTAAAGTT
>XM_036990517.1
CCTGCCGCCTGGTCAGGTGGCTAACTTGTGATCAGATTAATTTGCTTTTGGAAActagcgttagctagctggctactagGCAGTTAGCTAGCACAGTTTAGCGGCAGATGACATCGATAACAGTGCGCTATGCTAGCTAACAAGGAGTTAAATGATTTGGCTCGTGACCCTCCAGCACAGTGCTCCGCAGGACCAGTGGGAGATGACATGTTTCACTGGCAAGCTACAATAATGGGACCTAATGACAGTCCGTATCAGGGCGGCGTGTTCTTCTTGACCATTCACTTCCCCACTGACTATCCCTTCAAACCACCAAAGGTTGCATTCACCACAAGAATCTACCACCCAAACATCAACAGCAATGGCAGCATCTGCTTGGACATCCTGAGATCGCAGTGGTCGCCAGCACTCACCATCTCCAAAGTCCTCCTGTCCATCTGCTCACTTCTCTGTGACCCAAACCCAGACGACCCACTAGTTCCTGAGATCGCCCGCATCTACAAGACCGACAGGGAAAAATACAACAGAATAGCCCGGGAATGGACACAGAAATATGCAATGTAGTCGCAAGGCATAACAGCAGATAATCTGCCTTTTTATATTCGAAGGCTTGGGGAGCTTTGAACGAAAAAGAGGGAAAAAGTCTTGTTGGTTTCCATTGGAGTGATTTCTTTGAGccacaccctccctctccctacgCACTTGACCTCCATTCTCCTGCCTCACCCCCTTCAACCTGTCCAGCTGCGGTGTTGTACATATTTCAGATTGCATATTGTATACCCCACTGTCTGTTTCTGCCACTATGTCCACCGGCACCCATGTAGGACCACTCTTATTTGATTCCAAGAAGCGTTCCTTCTCATTTTTTTATGAACCCAAGGTTTGCTTTCCCAAGATTGAgggatttgtatttttttttaaaaacttttttcttctttttttccctCTGTGCTTCCAGCTATCCTGTGAGATGATGGTAAGGGTGGGGAGAGATGGGACTTGGAGAGTGTTTTTGGCTATGATAAGAAATGACTTTCAATCTGTCACTATGGTTCTGGAAACCACTAGGGGACTTTTTTCTGTTTGGCTACGGTATGCCCAGGATCCCGCCTCAGCCCCACCACAATATTAATCACTGTCATTAAGATGATAGTTAAGTACCCGTGGACCCATCCGCACTGTATGAAGTGGGACAATAGAATAATGAGACGGCGATCTATTGATGGAAGTATCTGAATATAACTTCCAAATGACTGTTTTCCCTCAACTTAGTCAAATGATATACTCCTTGTTgtttttgctaaaaaaaaaatgtgtgcccTTTTAGATCGACCTTTGAGAGCCTTCATTATACAATTTTTCTCTCAATGGTGGAAAATCTGTCTTTTTTGGTGTAGGTCTGATTTGGAAACGGCCAATGTTAGGCACATAAGTTGGGTGGTACAAGTAGTTTGTGACTGAAATGGTATTAATGCAGCTTGATCGTCCATTTGATCTAGCCTGAAAGGACAAAGATTTGACATGAGTATTAAATCATGTTTGAAGGCAACTTCACAAGACAAGCTCTAAAATGTTTTAAGCAACAGTAGCACTAGATTAGACGAATATGATGAGAGTTGAACTGTACCCTCAAGTGGGCTAAGTTGAAGGAAACAATCTGATTGGGGTGTATTTTCAGttattttcataaaaaaaaaaaaaattgaactcATTATTCTGTCTTCTCACTTTGTATATTTGAGCAGCCATTGTTGACTTAGCTCCAATGACTCATTGGCTGGATCTCAGAACCCTGGACTCAAGGACTTGAGTTCCAGACCGACAAACTTCTGTATATTTAATTGCCCAGGAGCTCATGGAGCTTGTCTTAATTAAACTGTGTAATAAACATGATTATTAAAGTT

Function

symbol description
ube2d2 Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within negative regulation of smoothened signaling pathway. Predicted to be active in nucleus. Orthologous to several human genes including UBE2D2 (ubiquitin conjugating enzyme E2 D2).

NR:

description
ubiquitin-conjugating enzyme E2 D2 isoform 1

GO:

id name namespace
GO:0061418 regulation of transcription from RNA polymerase II promoter in response to hypoxia biological_process
GO:0035666 TRIF-dependent toll-like receptor signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0034138 toll-like receptor 3 signaling pathway biological_process
GO:0034142 toll-like receptor 4 signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06689 UBE2D, UBC4, UBC5; ubiquitin-conjugating enzyme E2 D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618795.2 False 2074 mRNA 0.43 7 47123869 47127973
XM_036990517.1 True 1907 mRNA 0.43 7 47124316 47127973

Neighbor

gene id symbol gene type direction distance location
LOC110533128 LOC106603037 coding upstream 89364 47031429 ~ 47034505 (+)
LOC110534113 LOC106603039 coding upstream 107657 47009349 ~ 47016212 (+)
LOC110534111 LOC106603040 coding upstream 161326 46916136 ~ 46962543 (+)
LOC110534110 LOC106603042 coding upstream 228878 46888000 ~ 46894991 (+)
LOC110534109 NA coding upstream 256265 46864047 ~ 46867604 (+)
LOC110511048 LOC106603033 coding downstream 4162 47132135 ~ 47151549 (+)
LOC110534120 LOC106563662 coding downstream 131268 47259241 ~ 47374572 (+)
LOC110533129 NA coding downstream 281414 47409387 ~ 47420005 (+)
LOC118936698 NA coding downstream 292854 47420827 ~ 47426481 (+)
LOC110533130 LOC106602987 coding downstream 298645 47426618 ~ 47849279 (+)
G895617 NA non-coding upstream 1054 47122527 ~ 47122815 (+)
G895527 NA non-coding upstream 67346 47056116 ~ 47056523 (+)
G895522 NA non-coding upstream 68289 47055016 ~ 47055580 (+)
G895516 NA non-coding upstream 78751 47044856 ~ 47045118 (+)
G895517 NA non-coding upstream 79575 47043994 ~ 47044294 (+)
G895621 NA non-coding downstream 2048 47130021 ~ 47130240 (+)
G895632 NA non-coding downstream 25685 47153658 ~ 47153895 (+)
G895647 NA non-coding downstream 62733 47190706 ~ 47190938 (+)
G895655 NA non-coding downstream 83038 47211011 ~ 47211229 (+)
G895656 NA non-coding downstream 84275 47212248 ~ 47212448 (+)
G895515 NA other upstream 81086 47040514 ~ 47042783 (+)
G894437 LOC106603023 other upstream 423329 46627292 ~ 46700540 (+)
G894204 LOC100136012 other upstream 1005926 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 1222058 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 1480313 45622164 ~ 45654911 (+)
G895652 LOC106603032 other downstream 74952 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 88434 47216407 ~ 47217071 (+)
G896043 NA other downstream 781743 47909716 ~ 47910975 (+)
G896217 NA other downstream 1107209 48235182 ~ 48235616 (+)

Expression


Co-expression Network