LOC110534119 (LOC107684715)


Basic Information

Item Value
gene id LOC110534119
gene name LOC107684715
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47248137 ~ 47257617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618797.2
CGACTCGCTGTTTCTTTCCATCTTGTGAAGCGGCGAATCAGTGAGGCAGCACCACTGTATAGTGTTGACAGTAGGACTACAAGGAGTTATTCACCTTTTAATTGTTCGTGTCTGTCTGCTACGAGACTACGCCGAAGCTGTTCAGGCGCTCTGCCTGCAGACTAAGCGGGATCTCGCGAGAGTGGTGGCgtggctggctgactgtgggGTTGcagtagacagagggagaaggcaggcaggcagcatcaTGGCGGACAGAGACAGTGGAAGTGAGCAGGGAGGAGCAGCCACGGGCCCGGGCGTCGGTTCCATGCACCCAGTGACAGGAGGGGCGGGCTCGGCTTCCGGGCTGCAGCACGAGACGCAAGAGCTGGCGTCGAAACGGGTTGACATTCAAAACAAACGTTTCTACCTGGACGTGAAGCAGAACGCAAAAGGCCGCTTCTTGAAGATAGCCGAAGTCGGGGCCGGGGGAAACAAGAGCCGCCTCACTCTCTCCATGTCAGTGGCAGTAGAGTTCCGTGACTACTTAGGGGACTTCATCGAACATTATGCCCAATTAGGTCCTAGCAATCCGGACATCGCACAGGATGAGCCGAGGCGAGCACTTAAAAGCGAATTCTTGGTTCGGGAGAATCGGAAGTACTACATGGATCTGAAAGAGAACCAGAGAGGCCGGTTTCTGAGGATTCGACAGACCGTGAACCGGGGGCCCGGTTTGGGATCCACGCAAGGCCAGACGATTGCTCTTCCTGCCCAGGGACTTATTGAGTTTCGTGACGCTTTGGCTAAACTCATTGACGACTACGGAGTAGATGACGAACCTGCGGAGTTGCCCGAAGGGACCTCCTTGACAGTGGACAACAAACGCTTTTTCTTCGACGTGGGCTCCAATAAGTACGGAGTGTTCATGAGGGTAAGTGAGGTGAAGCCAACATACCGCAACTCTATCACGGTGCCCTACAAAGTGTGGTCCAAGTTTGGGAATACGTTCTGTAAATACGCGGAGGAGATGAAGAAGATCCAAGAGAAACAGCGGGAGAAAAGGGCATGTGAGATGCAACAGCAAGAGGAGACGCATGCTGATGATGCGGACGAGGATTGATATAGCGCAAAAACATGCACACAAAAAAAGTCATCAAAATAACAAAAAGAGAAATTATAATAAACTTTACTGTAAAAAGAAAGAGATCTAAAGATTTAACTGTAATTGTTTAACTCCAAGGGAGCACCACCCACAAAAAAGAAACCTACACAAACTGACAGTTATGACATGTTGTCACCCATCGCTGGATGTTACCCACTTACCCACCATTAATACAGTAAGCGGCTGCTAAACAAAGTAATAACATTATATATGAACCGTGTTTCCTACTTGATGACAGATGATAAAGAACTGAGTGTTTATTTCCCTTATTAACCAATAACTTTTGTACACGTTAAAGCTATTATAAAAAGTGTTTGCAATTTTCAAATGGAATTATTGCCGAGTTATAGAAAGTCCTTTTCATGTGAGCTAATGACTTCAGCACAAATCAGATATTttagttgtttttattttttaaccaaaATGTAAAACcctttttttaaaaacctttttaAAGGGTTGTCATTGTGTACTTGCCACCCTATTTACCTTTACCTGTGAGTAGAGATGTGTTTACACAAATCATACATGTATGAGGGCTAGGCCTGCATAGGAATTTTTGTTTCGATGTCATGCAGTCTGAAAAAGGTACAGAGGCAATGTCATGCAAGGGAAAAGTGGTCACTCTTTTGTGCAATGCATTGCATCAAACTCGGAACACATTGAACTGGTCAATGGAACTCGACATGAATACCTTCAAAAGGATTATTACTGTTGTAACTTCTAATTGAAATTGTCGTCATGCGGATTGGTACACTATAGACTACCTTTGTGTCTCGTTGTCATGcggtgtgtttaaaaaaatatatatatttaaaaaattttTTAAAAAAGGTACTTGTCTTAGATTAAGTGCAGTTACAACATGCAGCAAATGACATGACAAGTGCTCGAGAACAGCACATGTGTAATATAGAGCACTCAACCCTGCTAGCACCGCCGAATTGGCTTCATGGTCTATTGAGTGCTAAGACGAAAAAGTAAAGCATGGTTTTGTGAATCTGAAATGTACGTCAGTGTCAGCACTTATGGAACAGAGGTTTTCTGTTTGGGGAATTTGACTCACAAAAGGAACAGAAAATATCAGTCAACCAATAGGATGCCAAGGTGCCAATGAGTGTTATTGCTGCATGTTTACCTGTACAACGCCGAATGTTGGTTTTCCAACATAGTGGCTCAAGGACCTCTCTCCAAGCTGGTTTTCATCCCTGCCAATGCTCAACTCTTTAGCTTGAATGCTGGTATGACTCTGGATATCTCATAGAGTTTTATAAGCCGTGTTAGTTGTTTCCAAAGAAACGGACAATAATCAGACCATGACAAATTGACCTTAGTATTCCGTGAAAAGATCACTTGGCAGATTGAATTGAGTGAAAAGCAGCAGGCCTAACTGTCCTTGAGCCCCCCTGGTTGGAGCTACTGGTATTACTGATACCCAAATGGGTGCGTCCTCTTCAACATATAAACAACCCGGTGCCTTACACACCCCGCATGCTTACATGCTGGCCTGGTGCTTTGGATCATGACTTGGTTTCTTTTGTCCCCCCATATATTGCCCCCCCCATGCCACAGCATAACTCGTGGTGCTAAAGGGTTCGCTAAGAACCCTAAAGTAAAGGGGCAGATTACTAAGCGTTTTCTGCGACCTTCCTCCCCCAACCTCTCCCGTCCCCAAGCCGCACAGGTATCGGCCTACATGTAAGCATGGAAGGGGGTGGTCACCTAGAAGACGATGCGGAGGAACCTGCTCTTCACAGGCCCAAGCCCGGTGAGGTGGTCGCGGAGAGCAGTGGCTGATTGGAAACATCACTGTGGACTGGATTCAGAACGCTTGTTGGAGCTCCCCTTTGTGATATTTTCTGTGTGTAGTTCTACGACTTGGGCAGTAATGTGTCATTTGTAAGTTGCTAAAGACCTCAATTACAGGGGAGTAGTAAGCATGTCTTATTTTGTTTTAGTTTTTAGTTTGAACTTTTCAATGTTATTCCACATTATTTGTAATTTTGAATGTTTTTTCTGCTCACAGaggatattttattttttattttcagtGCAACATTTCATTACTGTGTGCAATATCCTATGTGCCAATGGTGGCAATATATGTATATCAATTAAATATATGATTAATATTTGAAAGCA

Function

NR:

description
PREDICTED: transcriptional activator protein Pur-alpha-like

GO:

id name namespace
GO:0003690 double-stranded DNA binding molecular_function

KEGG:

id description
K21772 PURA; transcriptional activator protein Pur-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618797.2 True 3289 mRNA 0.44 2 47248137 47257617
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534118 LOC106603020 coding downstream 13529 47203241 ~ 47234608 (-)
LOC110534116 LOC106603034 coding downstream 126501 47068699 ~ 47121636 (-)
LOC110534115 LOC106603035 coding downstream 192474 47045551 ~ 47055663 (-)
trnaa-agc-4 NA coding downstream 221949 47026116 ~ 47026188 (-)
LOC110534112 LOC106603038 coding downstream 222634 47015794 ~ 47025503 (-)
LOC110534122 NA coding upstream 125431 47383048 ~ 47384395 (-)
LOC110534123 pygma coding upstream 131222 47388839 ~ 47403411 (-)
zgc:165604 LOC106602986 coding upstream 629774 47887391 ~ 47899996 (-)
LOC110534127 LOC106602982 coding upstream 653420 47911037 ~ 47916446 (-)
LOC110534130 NA coding upstream 694347 47951964 ~ 47957491 (-)
G896432 NA non-coding downstream 28148 47219790 ~ 47219989 (-)
G896409 NA non-coding downstream 58537 47189352 ~ 47189600 (-)
G896379 NA non-coding downstream 109372 47138535 ~ 47138765 (-)
G896377 NA non-coding downstream 111206 47136690 ~ 47136931 (-)
G896596 NA non-coding upstream 255432 47513049 ~ 47568950 (-)
G896590 NA non-coding upstream 303953 47561570 ~ 47563346 (-)
G896592 NA non-coding upstream 306968 47564585 ~ 47565938 (-)
G896648 LOC106602987 non-coding upstream 398716 47656333 ~ 47656874 (-)
G894917 NA other downstream 1329798 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 1497806 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 2232090 45011329 ~ 45017446 (-)
G893541 NA other downstream 2479065 44768450 ~ 44769072 (-)
G896841 NA other upstream 730144 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 1624110 48881449 ~ 48907973 (-)
G899409 NA other upstream 2898575 50156192 ~ 50156902 (-)
G899421 NA other upstream 2924779 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 3207850 50463950 ~ 50482534 (-)

Expression

LOC110534119(LOC107684715) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110534119(LOC107684715) Expression in each Bioproject

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LOC110534119(LOC107684715) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network