zgc:165604 (LOC106602986)


Basic Information

Item Value
gene id zgc:165604
gene name LOC106602986
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47887391 ~ 47899996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618806.2
TCCACATTTGTAACGAGCAGAAGGGTGGGCTACTGATACTGCTGTTATGTGATGGACAGAGAGTAGGCAACATTTCTTCTTAGATATGGGCTGCGCTGGAGGGTGGCTGCTCCAGGCTGTGTGTCTGCTGTCTACCCTTCTGGATTATGGTGCAGTGAGGGTAACCATGAGACACTCCAATCTGGAGGTGGTTCAGGGGGACTCGGTGACCCTGccctgctccttcttcaccatGAGTCCCCTGTCCAGACTCAACATCATCTGGACCCTGGCACCCTTCTCTGACCCAGACTCCCCCACACAGGTGATAGTGTTTGATCATGGCCAGGTGATCGAGAACCCCTCCCTGACAGGCAGGGTGGGTTTCCTAGGCATCCCCTGGAGTGCTGACATCATCCTCAACAACACACGCATCTCAGATGCTGGCACCTACCGCTGCATGGTGAGCAACCCCCCAGAGACTGGAGACCCTGGTATAGGGGAACTGGCCCTTAACGTCCTGGCACCACCCTCGCTGCCCCTGTGCCTGTGGGATGGGGTCACAGATACAGGGGGGAGCGTTGCCCTGTCCTGCATGGTGGCTGAGGGGGTGCCCATTCCCGAGATGCGGTGGGATAAATTGGAACCAGAGGAAATCTCACTACCCATCAACATGGACGGGGACCTATCAGGCTCTGTCCAGATAGTCAACATCTCGTCCCAGAATTCTGGGCTGTACCGCTGCTCCGTCACCAACCTCCTGGGGACCCAGAACTGTTACGTCAACCTGTCTATCTACAGCCCTCCAGCCAGCTCCCCAGGGATCCTCCAGGGGGTGTTGTTGACCCTGTCCATGGCCCTGGTGCTGCTGGCCCTGCTGGTGCTGGTACTGTGGCTTCATCGCTCTGGCCAGAAGAGGAAGTGGACggaggggaaggaagaggagTGTTATAACGAGATAAGGTACACTCCTTCTCTGATCAAACGCTCCTTTGTTTGATCCCTCCATCCAAGGAAGACCAAACAGCCAGATGccttctacaaaaaaaaaaagaatattcAACTCACACTCTACAACTCATTCAATTGAACATTTGTTTCATAAAATGTGTTAAGAATGAGTGTGCATTCCATTGGAGAATGAAGAGAGTTACCTAACCGTGCCCTGCAGATAGACATTGGTTCCCACTATTGAAATATTTCTCCCATAGAATACTTGATAAACTGTAACTTTTTTTGCTAATAAAATGTTTGACTGGAA
>XM_021618807.2
CCTCCACATTTGTAACGAGCAGAAGGGTGGGCTACTGATACTGCTGTTATGTGATGGACAGAGAGTAGGCAACATTTCTTCTTAGATATGGGCTGCGCTGGAGGGTGGCTGCTCCAGGCTGTGTGTCTGCTGTCTACCCTTCTGGATTATGGTGCAGTGAGGGTAACCATGAGACACTCCAATCTGGAGGTGGTTCAGGGGGACTCGGTGACCCTGccctgctccttcttcaccatGAGTCCCCTGTCCAGACTCAACATCATCTGGACCCTGGCACCCTTCTCTGACCCAGACTCCCCCACACAGGTGATAGTGTTTGATCATGGCCAGGTGATCGAGAACCCCTCCCTGACAGGCAGGGTGGGTTTCCTAGGCATCCCCTGGAGTGCTGACATCATCCTCAACAACACACGCATCTCAGATGCTGGCACCTACCGCTGCATGGTGAGCAACCCCCCAGAGACTGGAGACCCTGGTATAGGGGAACTGGCCCTTAACGTCCTGGCACCACCCTCGCTGCCCCTGTGCCTGTGGGATGGGGTCACAGATACAGGGGGGAGCGTTGCCCTGTCCTGCATGGTGGCTGAGGGGGTGCCCATTCCCGAGATGCGGTGGGATAAATTGGAACCAGAGGAAATCTCACTACCCATCAACATGGACGGCTCTGTCCAGATAGTCAACATCTCGTCCCAGAATTCTGGGCTGTACCGCTGCTCCGTCACCAACCTCCTGGGGACCCAGAACTGTTACGTCAACCTGTCTATCTACAGCCCTCCAGCCAGCTCCCCAGGGATCCTCCAGGGGGTGTTGTTGACCCTGTCCATGGCCCTGGTGCTGCTGGCCCTGCTGGTGCTGGTACTGTGGCTTCATCGCTCTGGCCAGAAGAGGAAGTGGACggaggggaaggaagaggagTGTTATAACGAGATAAGGTACACTCCTTCTCTGATCAAACGCTCCTTTGTTTGATCCCTCCATCCAAGGAAGACCAAACAGCCAGATGccttctacaaaaaaaaaaagaatattcAACTCACACTCTACAACTCATTCAATTGAACATTTGTTTCATAAAATGTGTTAAGAATGAGTGTGCATTCCATTGGAGAATGAAGAGAGTTACCTAACCGTGCCCTGCAGATAGACATTGGTTCCCACTATTGAAATATTTCTCCCATAGAATACTTGATAAACTGTAACTTTTTTTGCTAATAAAATGTTTGACTGGAA
>XM_036933228.1
caaggaacacaccaggcagAGAGTAGGCAACATTTCTTCTTAGATATGGGCTGCGCTGGAGGGTGGCTGCTCCAGGCTGTGTGTCTGCTGTCTACCCTTCTGGATTATGGTGCAGTGAGGGTAACCATGAGACACTCCAATCTGGAGGTGGTTCAGGGGGACTCGGTGACCCTGccctgctccttcttcaccatGAGTCCCCTGTCCAGACTCAACATCATCTGGACCCTGGCACCCTTCTCTGACCCAGACTCCCCCACACAGGTGATAGTGTTTGATCATGGCCAGGTGATCGAGAACCCCTCCCTGACAGGCAGGGTGGGTTTCCTAGGCATCCCCTGGAGTGCTGACATCATCCTCAACAACACACGCATCTCAGATGCTGGCACCTACCGCTGCATGGTGAGCAACCCCCCAGAGACTGGAGACCCTGGTATAGGGGAACTGGCCCTTAACGTCCTGGCACCACCCTCGCTGCCCCTGTGCCTGTGGGATGGGGTCACAGATACAGGGGGGAGCGTTGCCCTGTCCTGCATGGTGGCTGAGGGGGTGCCCATTCCCGAGATGCGGTGGGATAAATTGGAACCAGAGGAAATCTCACTACCCATCAACATGGACGGGGACCTATCAGGCTCTGTCCAGATAGTCAACATCTCGTCCCAGAATTCTGGGCTGTACCGCTGCTCCGTCACCAACCTCCTGGGGACCCAGAACTGTTACGTCAACCTGTCTATCTACAGCCCTCCAGCCAGCTCCCCAGGGATCCTCCAGGGGGTGTTGTTGACCCTGTCCATGGCCCTGGTGCTGCTGGCCCTGCTGGTGCTGGTACTGTGGCTTCATCGCTCTGGCCAGAAGAGGAAGTGGACggaggggaaggaagaggagTGTTATAACGAGATAAGGTACACTCCTTCTCTGATCAAACGCTCCTTTGTTTGATCCCTCCATCCAAGGAAGACCAAACAGCCAGATGccttctacaaaaaaaaaaagaatattcAACTCACACTCTACAACTCATTCAATTGAACATTTGTTTCATAAAATGTGTTAAGAATGAGTGTGCATTCCATTGGAGAATGAAGAGAGTTACCTAACCGTGCCCTGCAGATAGACATTGGTTCCCACTATTGAAATATTTCTCCCATAGAATACTTGATAAACTGTAACTTTTTTTGCTAATAAAATGTTTGACTGGAA
>XM_036933229.1
GCTCGACTCAGGAGAATGAAGATGGACTACGCACTGTTGTACCCGGCCACATTGAAGATTATGGTCAACGAATCACCTAAAAAGCTCTACACACCTGAAGAGGCTGCTGCGTTTATTGACTCTCTCGGGTGCAGTGAGGGTAACCATGAGACACTCCAATCTGGAGGTGGTTCAGGGGGACTCGGTGACCCTGccctgctccttcttcaccatGAGTCCCCTGTCCAGACTCAACATCATCTGGACCCTGGCACCCTTCTCTGACCCAGACTCCCCCACACAGGTGATAGTGTTTGATCATGGCCAGGTGATCGAGAACCCCTCCCTGACAGGCAGGGTGGGTTTCCTAGGCATCCCCTGGAGTGCTGACATCATCCTCAACAACACACGCATCTCAGATGCTGGCACCTACCGCTGCATGGTGAGCAACCCCCCAGAGACTGGAGACCCTGGTATAGGGGAACTGGCCCTTAACGTCCTGGCACCACCCTCGCTGCCCCTGTGCCTGTGGGATGGGGTCACAGATACAGGGGGGAGCGTTGCCCTGTCCTGCATGGTGGCTGAGGGGGTGCCCATTCCCGAGATGCGGTGGGATAAATTGGAACCAGAGGAAATCTCACTACCCATCAACATGGACGGGGACCTATCAGGCTCTGTCCAGATAGTCAACATCTCGTCCCAGAATTCTGGGCTGTACCGCTGCTCCGTCACCAACCTCCTGGGGACCCAGAACTGTTACGTCAACCTGTCTATCTACAGCCCTCCAGCCAGCTCCCCAGGGATCCTCCAGGGGGTGTTGTTGACCCTGTCCATGGCCCTGGTGCTGCTGGCCCTGCTGGTGCTGGTACTGTGGCTTCATCGCTCTGGCCAGAAGAGGAAGTGGACggaggggaaggaagaggagTGTTATAACGAGATAAGGTACACTCCTTCTCTGATCAAACGCTCCTTTGTTTGATCCCTCCATCCAAGGAAGACCAAACAGCCAGATGccttctacaaaaaaaaaaagaatattcAACTCACACTCTACAACTCATTCAATTGAACATTTGTTTCATAAAATGTGTTAAGAATGAGTGTGCATTCCATTGGAGAATGAAGAGAGTTACCTAACCGTGCCCTGCAGATAGACATTGGTTCCCACTATTGAAATATTTCTCCCATAGAATACTTGATAAACTGTAACTTTTTTTGCTAATAAAATGTTTGACTGGAA

Function

NR:

description
immunoglobulin superfamily member 11-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618806.2 False 1240 mRNA 0.52 6 47887391 47890886
XM_021618807.2 False 1230 mRNA 0.52 6 47887391 47890888
XM_036933228.1 False 1200 mRNA 0.52 7 47887391 47895387
XM_036933229.1 True 1219 mRNA 0.52 6 47887391 47899996

Neighbor

gene id symbol gene type direction distance location
LOC110534123 pygma coding downstream 483980 47388839 ~ 47403411 (-)
LOC110534122 NA coding downstream 502996 47383048 ~ 47384395 (-)
LOC110534119 LOC107684715 coding downstream 629774 47248137 ~ 47257617 (-)
LOC110534118 LOC106603020 coding downstream 652783 47203241 ~ 47234608 (-)
LOC110534116 LOC106603034 coding downstream 765755 47068699 ~ 47121636 (-)
LOC110534127 LOC106602982 coding upstream 11041 47911037 ~ 47916446 (-)
LOC110534130 NA coding upstream 51968 47951964 ~ 47957491 (-)
LOC110534132 LOC100194673 coding upstream 90316 47990312 ~ 48010716 (-)
LOC110534135 LOC106602978 coding upstream 115889 48012083 ~ 48021620 (-)
LOC110534134 LOC106602977 coding upstream 128581 48028577 ~ 48038667 (-)
G896813 NA non-coding downstream 20322 47866619 ~ 47867069 (-)
G896648 LOC106602987 non-coding downstream 230517 47656333 ~ 47656874 (-)
G896596 NA non-coding downstream 318441 47513049 ~ 47568950 (-)
G896592 NA non-coding downstream 321453 47564585 ~ 47565938 (-)
G896590 NA non-coding downstream 324045 47561570 ~ 47563346 (-)
G896842 NA non-coding upstream 89136 47989132 ~ 47989347 (-)
G896913 NA non-coding upstream 122078 48022074 ~ 48022533 (-)
G896914 NA non-coding upstream 123054 48023050 ~ 48023301 (-)
G896923 NA non-coding upstream 144200 48044196 ~ 48044522 (-)
G894917 NA other downstream 1969052 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2137060 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 2871344 45011329 ~ 45017446 (-)
G893541 NA other downstream 3118319 44768450 ~ 44769072 (-)
G896841 NA other upstream 87765 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 981731 48881449 ~ 48907973 (-)
G899409 NA other upstream 2256196 50156192 ~ 50156902 (-)
G899421 NA other upstream 2282400 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2565471 50463950 ~ 50482534 (-)

Expression


Co-expression Network