LOC110534126 (LOC106602983)


Basic Information

Item Value
gene id LOC110534126
gene name LOC106602983
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47901559 ~ 47905308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933230.1
tgaggtgttgtgtgtagatgggatTGTGTGTAATGTGGATTTTTAACATTTTGaagtcaggctgtaacacaacaaaatgtggaataagtcaagggatatgaataatttctgaatgcactgtaacatAAGCAGACAAACAGATTAGGGGCAGAAGACATTAATTGAAATTTGATGCAAATTGGAAAAAGTCCAATGCTTTCACCATTGACTGGAGGCTTTCACGGATATTTTCGATTTTACTGATTTTACTCTTGTAGTGGTACAAATTATGTGATAGCTAAAAAGCAATTAAATCGTGTGTCCCTTGTGACATAACGAGTTCTTAAATTAATAACAGGCGGTGTTCCGTGTGTTCTATTTCTCAGAATTATTTTTCCAAACGGGAGAATGGGGTCATAAAAAGTGGCCTCTGTTCTGGGAATAATTTTGTAAAAAATGTGGGGCGCACATCGTAATTCGGTCATCTTAAATGGTTGTATAAATTCGCCAGTTAACCAGAAGTGTAATCAATGCGCAGAACCTCAAAATGTAAAGCCTAACAAATCGCATTTTGTGACTTTGAAGACACGCAGCTTTGTTGATTGGAGCTGTTTGAAGGTAGGTTGGAGCGCAGTGCCCACCACCAACTCCATGTCGACTTCGTTTAACTAATTGGCATAAATGGCAGGTTCACATTATTAATTAATTCATCTGGCTATCAATTGTCTGATACAGTGaaatagagaaatagagggaCAAATAGAGAAAACGTAACCAGGCAACTGGATCAATAATAAATCAACATGGAAATCAACTTTAATGCATGGAAAACTATGGGATGGATTCAATCCGTATTACTGTAGATCCgtaatttctgattgagccgacatGTGCAGCGTGTaccatgaatgcagtctctgcgACTGCGGGACCATTGCCTTTCACGCTAAAAAGCGGATATTCAGTGCTACGGAATGAATAGAGCCCATACTTTCTTCCAAGGTTTCAGAGCtctcatgttgttgtttttttcagccTGTCTACATACCTTTGAAGTGCATTACCGTTGAAATTGTCACCACACCCTTGGACAGTAAATGTGAGGAAGGAGTAAGGAGCGGCAATGAAAAGGGGCACAAAGAGTCAGCGACCTCGGTGACATGTGAGAATGAGGAGGACATGGATGAAGGGTTTACAGGGACTCTGCTACCTGCGAGAGATGCTCCTTCGTGGATGTGGGAGGGCTTCTCCATAGATGACTACAACCCAAAACCCCAACCAAAGATCATCACACCCAAACTGAAGGAAGATAAGAGATGCCTACCCAAAGTGACCGTGCCGCAGCCTTTCAAGATGACCCTGCGTGAGGAGAGCGAGGGGCAGAAGCAGAGGCAGCTTAGGAAGGCCTGGGAGGAGACTGCCAACAAGCCCACAGCCACGCTGCCTCGATTCAAAGCGAACCCTGTTCCCAAGAGCAACCAGTTGCCCTTGTATGATAAGATCGTAGAGGAGTGTGAGAGGCAGAGAAAGGTTCTCTATGAGAAACGGAGAGATCTCATGCTGGCCATGCAACAGCCCTTTAACTTGGGGTCAAAGGTTGCACATGGTTCTGCCAAGAGGATGGCTGTAGCTGAGGGTGATGGAGATGGAACAGCAGCCAAGGAGGGAGACGAGGGTCCAAAGCCGGAGAGTTCAGTTCCTGTCCGCTCCTATAAGGACATACTGAAAAGATGTGCCCAGCTGGCTACTCGTCATCCCCCTCCAACGGGAGTGGAGAAGAAGCTCACTTTCCAACCCGTTATCAACCGGACTATACCTGACTTTGGGAGGTTGCACCACAGGTTTGAGGACCGTCTCAGGAGTGTCAGACAGGGAATGCATTCCACTGTGCCACAGCCTTTTAGTTTCCAGGTGAACGCTGGAGGGGATCAGACTGTCAGTACGTCTAAGAAAACTCAAAAGCATGGCAAGAAGGACCCATGCCCCGTGGTGAAGTGGGAGCTAGCTAGAATTCTGGCCAGCTCACAAAGACTTACCAAGTCTGCACTGCTACGAGAGGAGGCTGCGAAGAAGAGACTAGTAACGAGAGAGAAGAGACTGAGAGCAGAGCAGCAGAAGTCAGAAGCTGGCTGTAGTCTTCAGAAAGAAGTGGCCAAGTGGCTCAACGCCCAGAAACAGCGCAGTACTGCCAGGGCACAGCGGCAACAACAGAACTTCAGACCCGGAGAGAGGCAGACAAGCGTTTCTCCCTGATCCTGGAGCGGGCTGGGCTGGACGAAGCTCTGCTGTGGAGCAAGGCTATGCTCCAGGAACAGGGCCAGCGTTTACAGCTGGAGGCCACAGAGGAAGCCTAGGAGGGCACTGATACTGATCTCCATGAGGAGCTTGCAGACTCCTCTGAGGGACGAACCCTGACAAAGACATGTTTTTACTAGTGTATTAAATTACAAGTGTTTGATCACATTCAAATTGTATGTTGCATCTCTCTACCATCTTATATCAGTGCATTCTTTGAGAAGTCACACTGTTGATATGCAACTaagatatgcaactgttcagggaagtcaggaaccaatacacacagtcagtcaggaaagcaaaggctagctttttcaaacagaaatttgcatcctgtagctctatatccaaaaagttttgggacactgtaaagtccatggagaataagagcacctcctcccagctgcccactgcactgaggctaggtaacacggtcaccaccgataaatccatgataatcaaacATTTCAGTtagcatttctctatggctggccatgctttcctcctggctaccacaaccccggccaacagctccgcacacCTCGCAGCTACTTGCCAGAgcatccccagcttctccttcacccaaatccagatagcagatgttctgaaagagctgcaaaacctggacccatacaaatcagctgggctagacaatctggacctctctttct

Function

NR:

description
protein FAM161A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933230.1 True 2948 mRNA 0.47 4 47901559 47905308

Neighbor

gene id symbol gene type direction distance location
LOC110534124 LOC106602984 coding upstream 14281 47857490 ~ 47887278 (+)
LOC110533130 LOC106602987 coding upstream 52280 47426618 ~ 47849279 (+)
LOC118936698 NA coding upstream 475078 47420827 ~ 47426481 (+)
LOC110533129 NA coding upstream 481554 47409387 ~ 47420005 (+)
LOC110534120 LOC106563662 coding upstream 526987 47259241 ~ 47374572 (+)
cfb LOC106602980 coding downstream 32055 47937363 ~ 47950461 (+)
LOC110534131 LOC106602979 coding downstream 58127 47963435 ~ 47987449 (+)
rin1a LOC106602976 coding downstream 116750 48022058 ~ 48029576 (+)
trnas-gcu-8 NA coding downstream 136744 48042052 ~ 48042133 (+)
LOC110534142 mcf2 coding downstream 237820 48143128 ~ 48158290 (+)
G895855 NA non-coding upstream 282823 47614295 ~ 47618736 (+)
G895856 NA non-coding upstream 285457 47605388 ~ 47616102 (+)
G895862 NA non-coding upstream 287347 47606354 ~ 47614212 (+)
G895863 NA non-coding upstream 288243 47607220 ~ 47613316 (+)
G895839 NA non-coding upstream 304503 47524694 ~ 47597056 (+)
G896044 NA non-coding downstream 1931 47907239 ~ 47909591 (+)
G896098 NA non-coding downstream 53156 47958464 ~ 47958684 (+)
G896052 NA non-coding downstream 82409 47987717 ~ 47989065 (+)
G896056 NA non-coding downstream 83825 47989133 ~ 47989348 (+)
G896122 NA non-coding downstream 105553 48010861 ~ 48011074 (+)
G895658 LOC106603032 other upstream 684488 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 696717 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 750010 47132135 ~ 47151549 (+)
G895515 NA other upstream 858776 47040514 ~ 47042783 (+)
G894437 LOC106603023 other upstream 1201019 46627292 ~ 46700540 (+)
G896043 NA other downstream 4408 47909716 ~ 47910975 (+)
G896217 NA other downstream 329874 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 770949 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1372394 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1525091 49426785 ~ 49432958 (+)

Expression


Co-expression Network