cfb (LOC106602980)


Basic Information

Item Value
gene id cfb
gene name LOC106602980
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47937363 ~ 47950461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933232.1
AATACACACTCTTTTGCAGATTGTATTACTTTTGGACCTGTGATTCACCATGATTCTTTCTGATTGCTGGAGTTTGTGTGCAGCGCTGCTGATATGTCCTCTTTATATGGGTGTCAGTGTTCTGTGTGAAGTCTTCTGTAAAGAGGAGAATGTGGGCGTGGAAGGAGGCCATTACACTCTTACCAAGAAGCTTGAGTATGGCAGTATGCTGATATACCACTGTCCAGAAGGGTACTATCCCTATCCAGCTTTAACTCGCTTGTGTCAGAAAAGTGGAACTTGGTCACCAACTCCCCATAAAAGGCCTGTACAAAAGTGCAAGATGGTTGAATGCCCAAACCCCTTGGTTTTGGAAAATGGTTCTGTCTTTCCTTTACAAATGCAATATTCTGTCAACAATGAGACCACATATGAGTGCTACACTGGGTACACATTACGTGGCTCATCCTCCCGTGTGTGCCAACCCAATGGGAAGTGGAGTGGGGGAACACCCATTTGCAGACATGACTCAGGAGGTGGAGAGCGTTGTGCTGACCCTGGGATTCCGGCCGGTGCTAGGAGGTCTGTGTCAGGTTTTGGCTTTGAAGACAAAGTGACATACCGCTGTGACGATGGCTTACATTTGCTGGGGTCAAAGGAGCGTGTATGTCAAGAGAATGGCCAATGGACTGGGACTGAGCCTAAATGTTACTACAAGCACACGTATGACACTGCACTGGAGGTCACGGAGGCATTCGGCAGTGCAATCAGAGAGAGCCTTCAGTTGGCAGCGCCCATCGATGACACAGATCAGGAAGGAAAGAAGATCACGGTCGATAAAGCTGGAAAGCTTAACATATACATTGCTATGGACATCTCTGACAGCATTGAGGAGGATCAGTTTAACAAAGCAAGAAATGCTGTCAAGAAACTTATCACAAAGGTCAGCTCCTTCGCAGTCAGCCCAAATTACGAAATCCTTTTCTTCGCATCCGACGTATTCGAAGTTGTCAACATATTGGATTTTTTGGGAgaaaaaagaaaaacacttgaagaTGTCTTGGCTGACTTGGACAACTTTAATTATGGAGATAGACAAAATGTTGGGACCAATCTCAACCTTGCTTTTAAAACCATCCTGGAACGCATGGCTATCCAAAAACAACGGAATGAAACTTTATTCAAAGAGGTCCACCATGTCCTCATATTTTTCacagatgGTGCTTTCAACATGGGGGGTAGGCCAGACGACACAGTGGCCAAAGTCAGGGAAATGGTCTACATGAATCAAAAGGAAGAAAGGGATAAATATCTTGatATCTATGTTTTTGGTGTTGGAAGGGAGATCTTTGATGAAGATATCCAGCCACTTGTGACAAAACGGGATAATGAGGACCACTACTTTAAACTAAAGGATGGTACAGAATTGGAAGAAACCTTTGATAAAATAATTGATGAGAGCAAGGTTGTGGGTCTATGCGGGCTCCATAGAAACTACGATCGTGACACCGCAGACACCATACGTGTAAGATATCCCTGGATGGCAAGGATTGGCATCCCGCATGAGGATGGACGTTATGGTAAATGCATGGGGTCTCTGGTCACTCCCCGCTTCATCTTGACTGCTGCTCACTGCTTCAGGTTCACAGACACAGCAGATAAAATCAAGATTACGATTGGCAAAAATGAAGTTCTAACAGGATCACGCCTAATATTACACCCTAATTATGATATCAAAgccaaagagaaagagggggtaaaGGAGTTCTATGATTATGACGTAGCTCTCATCGAACTGAAGAATGATGTGGATATCTCTATCAACATAAGACCGATTTGCATACCTTGCACCAAGGAAACAAGTGGTGCTTTAAGATTGTCGGGAGAGGAAATCACCTGCAAGCAACAAGAAGAGCTCTTGTTAAAAAATCCAATTGAAGAAGTCAGTTTCATGTCACATGATAAGGACAGGGTAAACAATAATGATAAGCGGAGCGATGCCAAACTTAAGCTCCTGGATCAGAGGGCGAATTGTATTGAATTGGCTACTAAGGTAGATGGCATAACATCAGATAATCTGAAGGATGTTGTCACTGAAAACTTCCTGTGCTCGGGTGGTCGTCAACCTACTAGAGATCATGTTGCCTGCAAAGgtgACTCCGGTGGTGCTCTGTTTAAGAACTATGATGATTATCGCACAATCCAGGTTGGATTGATCAGCTGGGGCACCAAAAATCTGTGCCCTGATGGTGACAACGATATCCAACAGGAGTCTAGCGATGACTCCAGAGATTTCCACATCAACCTTTTTAAAGTTGTGCCATTTCTGAAGAAGCATCTGGGGGATGACACACAAGATTATGCACCACTTAAGTTTTTAGACAAATAGAGACAGCGCTGAAGGTGTGCGTTCTTAACAAAGTTTCATGATCATGTGATTATGTCGTTCTGGCACTGAACATGATCATGTGTCCGAAAAAATAGTTTGCTGAACTGTAGTTATCAATGAAAGTGTGTTCATTAACTGAATTCGAAGATGAAAGTGTGTTCTTTGCTGGTGCTGATAATAAACTCAAACTCGTTAACTGAA

Function

NR:

description
complement factor B-like

GO: NA

KEGG:

id description
K01335 CFB; complement factor B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933232.1 True 2569 mRNA 0.43 18 47937363 47950461

Neighbor

gene id symbol gene type direction distance location
LOC110534126 LOC106602983 coding upstream 32055 47901559 ~ 47905308 (+)
LOC110534124 LOC106602984 coding upstream 50085 47857490 ~ 47887278 (+)
LOC110533130 LOC106602987 coding upstream 88084 47426618 ~ 47849279 (+)
LOC118936698 NA coding upstream 510882 47420827 ~ 47426481 (+)
LOC110533129 NA coding upstream 517358 47409387 ~ 47420005 (+)
LOC110534131 LOC106602979 coding downstream 12974 47963435 ~ 47987449 (+)
rin1a LOC106602976 coding downstream 71597 48022058 ~ 48029576 (+)
trnas-gcu-8 NA coding downstream 91591 48042052 ~ 48042133 (+)
LOC110534142 mcf2 coding downstream 192667 48143128 ~ 48158290 (+)
LOC110534145 fgf13 coding downstream 218541 48169002 ~ 48187520 (+)
G896044 NA non-coding upstream 27772 47907239 ~ 47909591 (+)
G895855 NA non-coding upstream 318627 47614295 ~ 47618736 (+)
G895856 NA non-coding upstream 321261 47605388 ~ 47616102 (+)
G895862 NA non-coding upstream 323151 47606354 ~ 47614212 (+)
G895863 NA non-coding upstream 324047 47607220 ~ 47613316 (+)
G896098 NA non-coding downstream 8003 47958464 ~ 47958684 (+)
G896052 NA non-coding downstream 37256 47987717 ~ 47989065 (+)
G896056 NA non-coding downstream 38672 47989133 ~ 47989348 (+)
G896122 NA non-coding downstream 60400 48010861 ~ 48011074 (+)
G896055 NA non-coding downstream 61599 48012060 ~ 48017903 (+)
G896043 NA other upstream 26388 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 720292 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 732521 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 785814 47132135 ~ 47151549 (+)
G895515 NA other upstream 894580 47040514 ~ 47042783 (+)
G896217 NA other downstream 284721 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 725796 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1327241 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1479938 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 2084529 50034990 ~ 50037685 (+)

Expression


Co-expression Network