LOC110534131 (LOC106602979)


Basic Information

Item Value
gene id LOC110534131
gene name LOC106602979
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47963435 ~ 47987449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933233.1
CTGACATTATTATTGTTGAGAGATTGTACAAGTAAAGAGTGCGTCTTTAACGAGAGGCGTAGCTATTCTCTTGTGCTCCCTGGAGGGCAAGTTCCGCTTCCTGCTAATAAAAACATCGCACTTGTGAGCATATCACATCAACTGTGGACTGCAGAACAGAAAAGCATGAAATGCAAGCAAGAAGGCATGGAATTATGTGGATATGAAAGCGCAATTTGAAGCTTCAGGATATGATAAAATATCTTTATGCACAAGTCAGGAAGCTGAATGACAGAAGGTATTTTCTTTCACATCCAAAACGCCTCCAGTATGTCGGAGAGAGGGGGTATCCCACGGACTGGGGGCACACCATCTCCACATATGCAGCCGTACAAGACCGTCACGATCGTCCCGAACCGTCCGGTTCAAATGAACCTGTATGCGACCTGGGAAATTGATCGCTCATCTCCAAGCTGTGTGCCCAGGCTCTTCACAGTTACTCTGAAGAAGCTGGTGATGCTTCAGGAGCTGGACAGAGACCTAACATCTGTTGTCATCGCAGTCAAACTCCAGGGATCAAAGCGCATTTTACGGTCCAATGAAATCCTGTTGTCATCGCCTGGACTTACCGAGACCGATCTTCAGCTAACGTTCTCCTTGCAATATCCACATTTTCTGAAGCGAGATGCCAACAGACTGCAGATCATGCtgcagaggaggaagaggtacaAGAACCGCACCATTCTGGGCTATAAGACCCTGGCACTGGGCCTCATCAACATGGCAGAGgtGATGCAGCACCCCAGTGAGGGAGCCCGTGTGTTGGGTCTCCACACCACGGTGAAGGACACGGCTGTGCCTGTGGCCGAGATGAGGGTCTACTCGCTCTCCAGCCAGCCCATCGACCACGAGATGTCCAAGGCCAAGATGTCTGACCGCTCCCCTGACATTGACAACTACTCGGAGGAAGACGAGGAGAGCTATTCATCAGAGCAGGACGGGAGTGATGACCCTGCTCACAGccagTATCTGTTTGACGAAGAGGATGACATGAGGAAGAAGAAGCACAGACACAAACTCACCTCTACAGCCTCCATCACCAGAGCTCATCCCAACATCAAGCAGAAGTTTGTGGCCTTGTTGAAGAGGTTTAAGGTGTCTGATGAGGTGGACTTTGGCCTGGAGCATGTGTCCCAGGAGCACATCCGTGATGTGGAGGAGGACCTGGATGAGCTCTATGACAGTCTGGAGATGTACAACCCCAATGACAGCGGGCCAGAGATGGAGGAGACGGACAGCGTCCTCAGCACACCCAAACCCAAACTCAGGCCCTTCTTTGAGGGCATGTCCCAGTCCAGCTCGCAGACCGAGTTTGGCAGTCTGAACAGCAGGTGCAGTCTGCCCAGAGACACCCTGAGCCCACAAGGAGAGCAGCCCCCGTCAGGCAAGATGAAACGCTCTCGCTCCCGCAACTTGGACGACTCTGAGACAGACACCCTGGTGCTGACTGATCCGGAGATGTTTCTGGACACTACCCCCTGCATCACTGTCTCTGTCCCAGAGCAGCTACCCAGGACCCCAATGAGGGAACTGAGGAGCAGCAAGAGTGAGAGCCACACCAGCATGCCCTACACCACCATGCCCTCCCCCAGGTTGGATGGCGGGCACACACCCAGGCAGAGACGTGGGACACCAATGAAGGAGAGGCGAGCACTGTCCAAGCCCCTAAGCGAACGCACCAACAGCTCTGACAGTGAAAGGTCACCGGAGCTCAGCCACACCCCACAGgTGCCCAGGAAGGCTGTGTATGACCAGTTGAATCAGATCTTCTCCTCAGACACTACCCTCCCGGACAGCCTGGTCCTGGTCAACACCAGTGATTGGCAGGGACAGTATGTGTCCGAGGTGCTGCTGGCTCAAAAACAGCCGTTAGTGTGTACCTGCTGTGGGGTGGAGATTcaggctgtcctcaccaccctcctCACGCGCATCCAAAAGTTCTGTAACTGTAACTCGTCCACGCCGCCGCCGGTCAAGGTGGTGGTGGCAGGGGGACAGAGCTACCTGGGGGCCATCCTGCACTTCTTTGTCACTCAGCTGGCCAACAAAACATCTGATTGGCTCAGCCTAATCCGCTTCCTGGTGGTCcccctgggtgagagagagaccggtTCAGGCTGTCACCCTGTCGCTAAGCACCTAGCCTCCCTGGACCCTCGCTacagctctgtgttcctggacaatGCCTGGAGAGACCTGTTCAGTCGCCTGGAGCCCCCTCACTCTACGGCTCCAGCTGCAGACGGCGTGGACGTGGCTGGGAGGATCAGCCAGTACATCAGCAGTGTCTCTGTCACACACCAGTTGCCTATCGCTGAGGCCATGCTCACCTGCAAGTACAAGACATATGACGAAGACTCTTACCAGAAATTTGTTCCCTTTGTTGGGGTGGTGAAAGTAGGGTTGATTGAACCGAATCCGGCCTATTCAGGTGGAGACTCTGAGGAGGCTGTTAGTGTTAGCTTGGCTGTTCCCTCCACCTCCCCACCCGCCCATGGATCTCCCACAGGGATGACCAGAGAGGCTGTCACCCcacctccgtctccctccctgaGTAGCGGTCTGGGGAGCCCTAATATGTCCCATGGGGTGGACACCATTGGGCTGACGGTGGATTATTGGGTAGCGACATGCTCAGAGCGGAAGAAGGATGGGGAGCGGTGTGACAAGGGCTCCAAGAACACCCTGAAGAGTGCCTTCCGTTCCCTGCAGGTCAGCAGGCTGCCAGGAGGGGGCTCCACTGAGAACCAGCCCCAGGCCAACACCATGGCTATGACTGTGGTCACCAAGGAGAAGAACAagaaagTCTCCACCATATTCCTGGGGAAGAAGCCCAAAGAGAGGGATGTGGACTCTAAAAGCCAGGTGGTTGAGGGCATCACCAGACTCATCTGTTCTACCAAGCAGCAGCAGACCAGCCTAAAAGTGTCTGTGGACGGCGTGGAGTGGACTGATGTGAAGTTCTTCCAGCTGGCTGCCCAGTGGCCCACCCATGTGAAGTACCTGCCAGTGGGGCTGTTTGGCTACAACAAGACCGCCACCTAGAGGCCAACCCAGACATGGTCACTCACTCTATGCTTCCTGGgcaccaaggttattatagttgtGTTTTTCtattcgttttttttatttttgtttgaagTTCAGTTTGCTAGTTTTCAGACCAGATTTACTATTTTTTATTTAGTTTGAGttttaaaaaaactattttcatttttgatattatttattttcagttttAGTGTTAGGGACAGAAAGTACCAGATTTCTTCCTTGGTAGTTAGTGATAAACAAGCTAGGCCTATTCGAAACCTCACTATCTCCAGGCATTACTTACCTGCCAAGTTCAGAAGCTTGAAAACCCTCATTTGATTGTTGTCCAAAGTTTAGAAGACTAAAAAAAACTAACTGAACATTTGATGATTTCTGTTGGAGTCAAATATCGTTTTAGTTTTTCAAACATGTTtgttaattatttatttgtttactaTAATAATCTTGCTGAGCAGTCTACAATGGACAGAAAAGCCAATGATTAAGGAGAGTTGTTACATGATGACATGGATTGACAGCGCTAATGGATTGAGGCCATAGATTTTAATGCTTGCCATGTTCCTATTTTCTAAGGTGGGTTCAAGCAACAAAATAACTCATTTGCCTTTTTTGAGATGCATTTCCTCGTTCATATGCTATGGCTCTTCTTTCAGTGGATTGGCAAGGTTAACTCCAGCTGTTCTTGTGGCTGTGttgtactttcttttttttcaagCAGTGTTATGTGAAGCAAATTTCAGTGGTCATTGATATTATTGATAGAATTTCCCtcagtgttgttactctgtgcataaaaaaaaaaagtttggtgAAAGTAATATCAATTGATTTTtatttacagaaatgttttgtggTAATTGGACCTGTTTTTCGCTTTTAGTATTTTTCTGTGAGTTACTGTTACTTTTGcgagtgtg
>XM_036933234.1
TGACATTATTATTGTTGAGAGATTGTACAAGTAAAGAGTGCGTCTTTAACGAGAGGCGTAGCTATTCTCTTGTGCTCCCTGGAGGGCAAGTTCCGCTTCCTGCTAATAAAAACATCGCACTTGTGAGCATATCACATCAACTGTGGACTGCAGAACAGAAAAGCATGAAATGCAAGCAAGAAGGCATGGAATTATGTGGATATGAAAGCGCAATTTGAAGCTTCAGGATATGATAAAATATCTTTATGCACAAGTCAGGAAGCTGAATGACAGAAGGTATTTTCTTTCACATCCAAAACGCCTCCAGTATGTCGGAGAGAGGGGGTATCCCACGGACTGGGGGCACACCATCTCCACATATGCAGCCGTACAAGACCGTCACGATCGTCCCGAACCGTCCGGTTCAAATGAACCTGTATGCGACCTGGGAAATTGATCGCTCATCTCCAAGCTGTGTGCCCAGGCTCTTCACAGTTACTCTGAAGAAGCTGGTGATGCTTCAGGAGCTGGACAGAGACCTAACATCTGTTGTCATCGCAGTCAAACTCCAGGGATCAAAGCGCATTTTACGGTCCAATGAAATCCTGTTGTCATCGCCTGGACTTACCGAGACCGATCTTCAGCTAACGTTCTCCTTGCAATATCCACATTTTCTGAAGCGAGATGCCAACAGACTGCAGATCATGCtgcagaggaggaagaggtacaAGAACCGCACCATTCTGGGCTATAAGACCCTGGCACTGGGCCTCATCAACATGGCAGAGgtGATGCAGCACCCCAGTGAGGGAGCCCGTGTGTTGGGTCTCCACACCACGGTGAAGGACACGGCTGTGCCTGTGGCCGAGATGAGGGTCTACTCGCTCTCCAGCCAGCCCATCGACCACGAGATGTCCAAGGCCAAGATGTCTGACCGCTCCCCTGACATTGACAACTACTCGGAGGAAGACGAGGAGAGCTATTCATCAGAGCAGGACGGGAGTGATGACCCTGCTCACAGccagTATCTGTTTGACGAAGAGGATGACATGAGGAAGAAGAAGCACAGACACAAACTCACCTCTACAGCCTCCATCACCAGAGCTCATCCCAACATCAAGCAGAAGTTTGTGGCCTTGTTGAAGAGGTTTAAGGTGTCTGATGAGGTGGACTTTGGCCTGGAGCATGTGTCCCAGGAGCACATCCGTGATGTGGAGGAGGACCTGGATGAGCTCTATGACAGTCTGGAGATGTACAACCCCAATGACAGCGGGCCAGAGATGGAGGAGACGGACAGCGTCCTCAGCACACCCAAACCCAAACTCAGGCCCTTCTTTGAGGGCATGTCCCAGTCCAGCTCGCAGACCGAGTTTGGCAGTCTGAACAGCAGGTGCAGTCTGCCCAGAGACACCCTGAGCCCACAAGGAGAGCAGCCCCCGTCAGGCAAGATGAAACGCTCTCGCTCCCGCAACTTGGACGACTCTGAGACAGACACCCTGGTGCTGACTGATCCGGAGATGTTTCTGGACACTACCCCCTGCATCACTGTCTCTGTCCCAGAGCAGCTACCCAGGACCCCAATGAGGGAACTGAGGAGCAGCAAGAGTGAGAGCCACACCAGCATGCCCTACACCACCATGCCCTCCCCCAGGTTGGATGGCGGGCACACACCCAGGCAGAGACGTGGGACACCAATGAAGGAGAGGCGAGCACTGTCCAAGCCCCTAAGCGAACGCACCAACAGCTCTGACAGTGAAAGGTCACCGGAGCTCAGCCACACCCCACAGgTGCCCAGGAAGGCTGTGTATGACCAGTTGAATCAGATCTTCTCCTCAGACACTACCCTCCCGGACAGCCTGGTCCTGGTCAACACCAGTGATTGGCAGGGACAGTATGTGTCCGAGGTGCTGCTGGCTCAAAAACAGCCGTTAGTGTGTACCTGCTGTGGGGTGGAGATTcaggctgtcctcaccaccctcctCACGCGCATCCAAAAGTTCTGTAACTGTAACTCGTCCACGCCGCCGCCGGTCAAGGTGGTGGTGGCAGGGGGACAGAGCTACCTGGGGGCCATCCTGCACTTCTTTGTCACTCAGCTGGCCAACAAAACATCTGATTGGCTCAGCCTAATCCGCTTCCTGGTGGTCcccctggGCTGTCACCCTGTCGCTAAGCACCTAGCCTCCCTGGACCCTCGCTacagctctgtgttcctggacaatGCCTGGAGAGACCTGTTCAGTCGCCTGGAGCCCCCTCACTCTACGGCTCCAGCTGCAGACGGCGTGGACGTGGCTGGGAGGATCAGCCAGTACATCAGCAGTGTCTCTGTCACACACCAGTTGCCTATCGCTGAGGCCATGCTCACCTGCAAGTACAAGACATATGACGAAGACTCTTACCAGAAATTTGTTCCCTTTGTTGGGGTGGTGAAAGTAGGGTTGATTGAACCGAATCCGGCCTATTCAGGTGGAGACTCTGAGGAGGCTGTTAGTGTTAGCTTGGCTGTTCCCTCCACCTCCCCACCCGCCCATGGATCTCCCACAGGGATGACCAGAGAGGCTGTCACCCcacctccgtctccctccctgaGTAGCGGTCTGGGGAGCCCTAATATGTCCCATGGGGTGGACACCATTGGGCTGACGGTGGATTATTGGGTAGCGACATGCTCAGAGCGGAAGAAGGATGGGGAGCGGTGTGACAAGGGCTCCAAGAACACCCTGAAGAGTGCCTTCCGTTCCCTGCAGGTCAGCAGGCTGCCAGGAGGGGGCTCCACTGAGAACCAGCCCCAGGCCAACACCATGGCTATGACTGTGGTCACCAAGGAGAAGAACAagaaagTCTCCACCATATTCCTGGGGAAGAAGCCCAAAGAGAGGGATGTGGACTCTAAAAGCCAGGTGGTTGAGGGCATCACCAGACTCATCTGTTCTACCAAGCAGCAGCAGACCAGCCTAAAAGTGTCTGTGGACGGCGTGGAGTGGACTGATGTGAAGTTCTTCCAGCTGGCTGCCCAGTGGCCCACCCATGTGAAGTACCTGCCAGTGGGGCTGTTTGGCTACAACAAGACCGCCACCTAGAGGCCAACCCAGACATGGTCACTCACTCTATGCTTCCTGGgcaccaaggttattatagttgtGTTTTTCtattcgttttttttatttttgtttgaagTTCAGTTTGCTAGTTTTCAGACCAGATTTACTATTTTTTATTTAGTTTGAGttttaaaaaaactattttcatttttgatattatttattttcagttttAGTGTTAGGGACAGAAAGTACCAGATTTCTTCCTTGGTAGTTAGTGATAAACAAGCTAGGCCTATTCGAAACCTCACTATCTCCAGGCATTACTTACCTGCCAAGTTCAGAAGCTTGAAAACCCTCATTTGATTGTTGTCCAAAGTTTAGAAGACTAAAAAAAACTAACTGAACATTTGATGATTTCTGTTGGAGTCAAATATCGTTTTAGTTTTTCAAACATGTTtgttaattatttatttgtttactaTAATAATCTTGCTGAGCAGTCTACAATGGACAGAAAAGCCAATGATTAAGGAGAGTTGTTACATGATGACATGGATTGACAGCGCTAATGGATTGAGGCCATAGATTTTAATGCTTGCCATGTTCCTATTTTCTAAGGTGGGTTCAAGCAACAAAATAACTCATTTGCCTTTTTTGAGATGCATTTCCTCGTTCATATGCTATGGCTCTTCTTTCAGTGGATTGGCAAGGTTAACTCCAGCTGTTCTTGTGGCTGTGttgtactttcttttttttcaagCAGTGTTATGTGAAGCAAATTTCAGTGGTCATTGATATTATTGATAGAATTTCCCtcagtgttgttactctgtgcataaaaaaaaaaagtttggtgAAAGTAATATCAATTGATTTTtatttacagaaatgttttgtggTAATTGGACCTGTTTTTCGCTTTTAGTATTTTTCTGTGAGTTACTGTTACTTTTGcgagtgtg

Function

NR:

description
phosphofurin acidic cluster sorting protein 1-like

GO: NA

KEGG:

id description
K23294 PACS2; phosphofurin acidic cluster sorting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933233.1 False 4010 mRNA 0.50 23 47963435 47987449
XM_036933234.1 True 3988 mRNA 0.50 23 47963436 47987449

Neighbor

gene id symbol gene type direction distance location
cfb LOC106602980 coding upstream 12974 47937363 ~ 47950461 (+)
LOC110534126 LOC106602983 coding upstream 58127 47901559 ~ 47905308 (+)
LOC110534124 LOC106602984 coding upstream 76157 47857490 ~ 47887278 (+)
LOC110533130 LOC106602987 coding upstream 114156 47426618 ~ 47849279 (+)
LOC118936698 NA coding upstream 536954 47420827 ~ 47426481 (+)
rin1a LOC106602976 coding downstream 34609 48022058 ~ 48029576 (+)
trnas-gcu-8 NA coding downstream 54603 48042052 ~ 48042133 (+)
LOC110534142 mcf2 coding downstream 155679 48143128 ~ 48158290 (+)
LOC110534145 fgf13 coding downstream 181553 48169002 ~ 48187520 (+)
LOC110534146 zic3 coding downstream 213936 48201242 ~ 48205374 (+)
G896098 NA non-coding upstream 4751 47958464 ~ 47958684 (+)
G896044 NA non-coding upstream 53844 47907239 ~ 47909591 (+)
G895855 NA non-coding upstream 344699 47614295 ~ 47618736 (+)
G895856 NA non-coding upstream 347333 47605388 ~ 47616102 (+)
G896052 NA non-coding downstream 268 47987717 ~ 47989065 (+)
G896056 NA non-coding downstream 1684 47989133 ~ 47989348 (+)
G896122 NA non-coding downstream 23412 48010861 ~ 48011074 (+)
G896055 NA non-coding downstream 24611 48012060 ~ 48017903 (+)
G896060 LOC106602978 non-coding downstream 30593 48018042 ~ 48018912 (+)
G896043 NA other upstream 52460 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 746364 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 758593 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 811886 47132135 ~ 47151549 (+)
G895515 NA other upstream 920652 47040514 ~ 47042783 (+)
G896217 NA other downstream 247733 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 688808 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1290253 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1442950 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 2047541 50034990 ~ 50037685 (+)

Expression


Co-expression Network