LOC110534132 (LOC100194673)


Basic Information

Item Value
gene id LOC110534132
gene name LOC100194673
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 47990312 ~ 48010716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933236.1
cgtaatcctgctgacatggtcgccagttgtacggtgtttccctccgacacattgaccttcACCGCCTGGTGCAACTCTCACCTGCGTAAAGCGGGCACACAGATTGAGAACATTGAGGAGGACTTCAGGAATGGACTCAAACTCATGTTGCTGTTGGAGGTCATCTCAGgtgAAAGGCTTCCCAAGCCAGACAAAGGCAAAATGCGTTTCCACAAAATCGCCAACGTGAACAAGGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAGCTGGTGTCCATCGGCGCCGAGGAGATTGTGGATGGTAATGTGAAGATGACCCTGGGGATGATCTGGACCATCATTCTGCGTTTCGCCATCCAGGACATCTCTGTAGAGGagacCTCTGCTAAGGAGGGGCTATTGCTGTGGTGCCAGAGGAAGACTGCCCCCTACAGGAATGTCAATGTGCAGAACTTCCACATCAGTTGGAAGGATGGCCTGGCACTGTGTGCCCTCATCCACAGACACAGACCTGACCTCATTGACTACTCCAAACTGCGCAAGgatgacCCCATGGGCAATCTCAACACTGCCTTCGAGGTAGCAGAGAAGTACCTGGACATCCCCAAGATGTTGGATGCTGAAGATATTGTGAACACCCCAAAGCCCGATGAGAAAGCCATCATGACCTATGTGTCCTGCTTCTATCATGCCTTCGCTGGAGCCGAGCAGGCCGAGACGGCTGCCAAGAGGATCTGCAAGGTGCTGGCTGTCAACCAGGAGAACGAGAAACTCATGGAGGAGTATGAGAAGCTGGCCAGTGAGCTGCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGTGTGGCCGAGCAAACCATGCGCGCCATGCAGCAGAAGCTGGAGGACTTCCGTGACTACCGTCGTGTCCACAAGCCTCCCAAGGTGCAGGAGAAGTGTCAGCTGGAGATTAACTTCAACACCCTGCAGACCAAGCTGAGGCTGAGCAACAGGCCAGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCGGACATTGCCAATGCCTGGAAGGGTCTGGAGCAGGTAGAGAAGGGCTATGAGGAGTGGCTGCTCACTGAGATCCGCCGCCTGGAGAGGCTGGACCACCTGGCTGAGAAGTTCAAGCAGAAGTGTTCCCTGCATGAGTCCTGGACCTCAGGTAAGGTGGAGCTGCTGTCCATGAAGGACTATGAGTCTGCCTCACTGATGGAGATCCGTGCCCTGATGAGGAAGCACGAGGCGTTTGAGAGCGACCTGGCCGCCCACCAGGACAGAGTGGAGCAGATTGCTGCCATCGCCCAGGAGCTCAATGAGCTGGACTATCATGACGCCGTCACCATCAACGCCCGCTGCCAGGGTATTTGTGACCAGTGGGACAACCTGGGCACCTTGACCCAGAAGAGGAGAGACTCACTGGAGCGTGTGGAGAAGCTGTGGGAGACCATCGACCAGCTGTACCTGGAGTTTGCCAAGAGAGCAGCCCCCTTCAACAACTGGATGGACGGAGCCATGGAGGACTTGCAGGACATGTTCATTGTGCACAGCATTGAGGAGATTCAGagtCTGATCACAGCCCATGACCAGTTCAAGGCCACTCTGCCAGAGGCTGATAAGGAGCGCATTGCAACCATGGGCATCCAGAATGAGATCGTGAAGATCGCGCAGACCTACGGCATCAAGCTGTCAGGAGTCAACCCCTACACCAACCTTTCCCCCCAGGACATCACCGACAAATGGGATGCTGTGAAACACCTGGTGCCCCTCAGGGATCAGATGCTGCAGGAGGAGGTGGCCAGGCAGCAGTCCAACGAGAGGCTGAGGCGCCAGTTCGCTGCCCAGGCCAACATCATTGGACCCTGGATCCAGACCAAGATGGAGGAGATCAGCCACGTGTCTGTGGACATCGCCGGCTCCCTGGAGGAACAGATGAGCAACCTGAAGCAGTACGAGCAGAACATCATAAACTACAAGTGCAACATCGACAAGCTGGAGGGAGACCACCAGCTCAGCCAGGAGTCCCTCATCTTCGACAATAAGCACACCAACTACACCATGGAGcatgTGCGTGTAGGCTGGGAGCAGCTCCTGACCACCATTGCCCGCACCATCAACGAGGTGGAGAACCAGATCCTGACCCGAGATGCCAAGGGCATCAGCCAGGAGCAGCTCAACGAGTTCAGAGCCTCATTCAACCACTTTGACAGGAAGAGAAATGGTATGATGGACCCAGATGACTTCCGCGCCTGTCTCATCTCCATGGGATACGATCTGGGTGAGGTGGAGTTTGCCCGCATCATGACGCTGGTGGATTCCAACAACACAGGTGTGGTGACCTTCCAGGCCTTCATCGACTTCATGACCCGTGAGACTGCCGAGACAGACACCGCCGATCAGGTCATGGCCTCATTCAAGATCCTGGCCTCTGACAAGACATACATCACAGTGGAAGAACTGCGCAGGGAGCTGCCCCCAGAGCAGGCCGACTACTGCATCAGCCGCATGACCAGTTACATCGGCAGCGGCGCGCCCCCAGGCGCCCTGGACTACATCTCCTTCTCCAGTGCCCTGTACGGAGAGAGCGACTTATAAACACAACCCAGAccctctactgttctgttccccaAGACCACCCACAGGCTTTGCTCCGATGCCCTGAACTTCATTAGTAACCGTCAGGTCAACCAAGAACCCTTGAGAGAGCAAATATGAACTTTCACAATATCAGGATTCCTATATTCGTCACTGTCTGCAGTTTATGATTTCGCAATGTTTGGCCCAGCAAGGCCACTAGACTGTGAGTAGTTAAACTGAGGCACTTGTATCAGGACCTTTTTATTCTCATTGACTAAGGCACTAGGAGCAAAGCCGCCCTCATACTCATTCGGGCGACTTTTGTTTTGGAGAAGGGAAAAAATTAAAGTACTTTAAGGAAGGAA
>XM_036933235.1
TTACGTGTGTCGCCTCTGACCAGGGGTTGGAGTGCGGTCTTTACTTCGTGCGGTGGGAGTAGCATCTATAGGCAGGAATCTCAAATCGGGCGCAGCTTTCTCTGCTACAGAAAGTGTCCCTACAAGTTTGCGGGTTTAGGAGTTGAAAGGTGCAAATTAAATTGATTAGGTCGAGGGGATAAGCATCTCCCAAAGGAGACAGCGAAATGACAGCAATCGAAACTCAGGTGCAATATGGCTCCTACATGACTTCGGAGCAAGTCTACATGACCCAAGAGGATGATTGGGACAGGGACCTTCTGTTGGACCCTGCCTGGGAGAAACAGCAGCGCAagaccttcACCGCCTGGTGCAACTCTCACCTGCGTAAAGCGGGCACACAGATTGAGAACATTGAGGAGGACTTCAGGAATGGACTCAAACTCATGTTGCTGTTGGAGGTCATCTCAGgtgAAAGGCTTCCCAAGCCAGACAAAGGCAAAATGCGTTTCCACAAAATCGCCAACGTGAACAAGGCCCTGGACTTCATCTGCAGCAAGGGAGTCAAGCTGGTGTCCATCGGCGCCGAGGAGATTGTGGATGGTAATGTGAAGATGACCCTGGGGATGATCTGGACCATCATTCTGCGTTTCGCCATCCAGGACATCTCTGTAGAGGagacCTCTGCTAAGGAGGGGCTATTGCTGTGGTGCCAGAGGAAGACTGCCCCCTACAGGAATGTCAATGTGCAGAACTTCCACATCAGTTGGAAGGATGGCCTGGCACTGTGTGCCCTCATCCACAGACACAGACCTGACCTCATTGACTACTCCAAACTGCGCAAGgatgacCCCATGGGCAATCTCAACACTGCCTTCGAGGTAGCAGAGAAGTACCTGGACATCCCCAAGATGTTGGATGCTGAAGATATTGTGAACACCCCAAAGCCCGATGAGAAAGCCATCATGACCTATGTGTCCTGCTTCTATCATGCCTTCGCTGGAGCCGAGCAGGCCGAGACGGCTGCCAAGAGGATCTGCAAGGTGCTGGCTGTCAACCAGGAGAACGAGAAACTCATGGAGGAGTATGAGAAGCTGGCCAGTGAGCTGCTGGAGTGGATCCGTCGCACCATCCCCTGGCTGGAGAACCGTGTGGCCGAGCAAACCATGCGCGCCATGCAGCAGAAGCTGGAGGACTTCCGTGACTACCGTCGTGTCCACAAGCCTCCCAAGGTGCAGGAGAAGTGTCAGCTGGAGATTAACTTCAACACCCTGCAGACCAAGCTGAGGCTGAGCAACAGGCCAGCCTTCATGCCCTCCGAGGGCAAGATGGTGTCGGACATTGCCAATGCCTGGAAGGGTCTGGAGCAGGTAGAGAAGGGCTATGAGGAGTGGCTGCTCACTGAGATCCGCCGCCTGGAGAGGCTGGACCACCTGGCTGAGAAGTTCAAGCAGAAGTGTTCCCTGCATGAGTCCTGGACCTCAGGTAAGGTGGAGCTGCTGTCCATGAAGGACTATGAGTCTGCCTCACTGATGGAGATCCGTGCCCTGATGAGGAAGCACGAGGCGTTTGAGAGCGACCTGGCCGCCCACCAGGACAGAGTGGAGCAGATTGCTGCCATCGCCCAGGAGCTCAATGAGCTGGACTATCATGACGCCGTCACCATCAACGCCCGCTGCCAGGGTATTTGTGACCAGTGGGACAACCTGGGCACCTTGACCCAGAAGAGGAGAGACTCACTGGAGCGTGTGGAGAAGCTGTGGGAGACCATCGACCAGCTGTACCTGGAGTTTGCCAAGAGAGCAGCCCCCTTCAACAACTGGATGGACGGAGCCATGGAGGACTTGCAGGACATGTTCATTGTGCACAGCATTGAGGAGATTCAGagtCTGATCACAGCCCATGACCAGTTCAAGGCCACTCTGCCAGAGGCTGATAAGGAGCGCATTGCAACCATGGGCATCCAGAATGAGATCGTGAAGATCGCGCAGACCTACGGCATCAAGCTGTCAGGAGTCAACCCCTACACCAACCTTTCCCCCCAGGACATCACCGACAAATGGGATGCTGTGAAACACCTGGTGCCCCTCAGGGATCAGATGCTGCAGGAGGAGGTGGCCAGGCAGCAGTCCAACGAGAGGCTGAGGCGCCAGTTCGCTGCCCAGGCCAACATCATTGGACCCTGGATCCAGACCAAGATGGAGGAGATCAGCCACGTGTCTGTGGACATCGCCGGCTCCCTGGAGGAACAGATGAGCAACCTGAAGCAGTACGAGCAGAACATCATAAACTACAAGTGCAACATCGACAAGCTGGAGGGAGACCACCAGCTCAGCCAGGAGTCCCTCATCTTCGACAATAAGCACACCAACTACACCATGGAGcatgTGCGTGTAGGCTGGGAGCAGCTCCTGACCACCATTGCCCGCACCATCAACGAGGTGGAGAACCAGATCCTGACCCGAGATGCCAAGGGCATCAGCCAGGAGCAGCTCAACGAGTTCAGAGCCTCATTCAACCACTTTGACAGGAAGAGAAATGGTATGATGGACCCAGATGACTTCCGCGCCTGTCTCATCTCCATGGGATACGATCTGGGTGAGGTGGAGTTTGCCCGCATCATGACGCTGGTGGATTCCAACAACACAGGTGTGGTGACCTTCCAGGCCTTCATCGACTTCATGACCCGTGAGACTGCCGAGACAGACACCGCCGATCAGGTCATGGCCTCATTCAAGATCCTGGCCTCTGACAAGACATACATCACAGTGGAAGAACTGCGCAGGGAGCTGCCCCCAGAGCAGGCCGACTACTGCATCAGCCGCATGACCAGTTACATCGGCAGCGGCGCGCCCCCAGGCGCCCTGGACTACATCTCCTTCTCCAGTGCCCTGTACGGAGAGAGCGACTTATAAACACAACCCAGAccctctactgttctgttccccaAGACCACCCACAGGCTTTGCTCCGATGCCCTGAACTTCATTAGTAACCGTCAGGTCAACCAAGAACCCTTGAGAGAGCAAATATGAACTTTCACAATATCAGGATTCCTATATTCGTCACTGTCTGCAGTTTATGATTTCGCAATGTTTGGCCCAGCAAGGCCACTAGACTGTGAGTAGTTAAACTGAGGCACTTGTATCAGGACCTTTTTATTCTCATTGACTAAGGCACTAGGAGCAAAGCCGCCCTCATACTCATTCGGGCGACTTTTGTTTTGGAGAAGGGAAAAAATTAAAGTACTTTAAGGAAGGAA

Function

NR:

description
alpha-actinin-3

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K21073 ACTN2_3; actinin alpha 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933236.1 False 2960 mRNA 0.55 21 47990312 48008619
XM_036933235.1 True 3241 mRNA 0.54 21 47990312 48010716

Neighbor

gene id symbol gene type direction distance location
LOC110534130 NA coding downstream 32821 47951964 ~ 47957491 (-)
LOC110534127 LOC106602982 coding downstream 73866 47911037 ~ 47916446 (-)
zgc:165604 LOC106602986 coding downstream 90316 47887391 ~ 47899996 (-)
LOC110534123 pygma coding downstream 586901 47388839 ~ 47403411 (-)
LOC110534122 NA coding downstream 605917 47383048 ~ 47384395 (-)
LOC110534135 LOC106602978 coding upstream 5169 48012083 ~ 48021620 (-)
LOC110534134 LOC106602977 coding upstream 17861 48028577 ~ 48038667 (-)
LOC110534136 LOC106602975 coding upstream 36171 48046887 ~ 48049905 (-)
LOC110534137 LOC106602974 coding upstream 59617 48070333 ~ 48074547 (-)
LOC110534139 LOC106602972 coding upstream 65071 48075787 ~ 48101873 (-)
G896842 NA non-coding downstream 965 47989132 ~ 47989347 (-)
G896826 NA non-coding downstream 39624 47873629 ~ 47950688 (-)
G896813 NA non-coding downstream 123243 47866619 ~ 47867069 (-)
G896648 LOC106602987 non-coding downstream 333438 47656333 ~ 47656874 (-)
G896592 NA non-coding downstream 424374 47564585 ~ 47565938 (-)
G896913 NA non-coding upstream 11358 48022074 ~ 48022533 (-)
G896914 NA non-coding upstream 12334 48023050 ~ 48023301 (-)
G896923 NA non-coding upstream 33480 48044196 ~ 48044522 (-)
G896924 NA non-coding upstream 34131 48044847 ~ 48045127 (-)
G896841 NA other downstream 1236 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 757266 47203241 ~ 47234608 (-)
G894917 NA other downstream 2071973 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2239981 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 2974265 45011329 ~ 45017446 (-)
LOC110534172 LOC106602940 other upstream 871011 48881449 ~ 48907973 (-)
G899409 NA other upstream 2145476 50156192 ~ 50156902 (-)
G899421 NA other upstream 2171680 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2454751 50463950 ~ 50482534 (-)
G899727 NA other upstream 2710270 50720986 ~ 50721603 (-)

Expression


Co-expression Network