rin1a (LOC106602976)


Basic Information

Item Value
gene id rin1a
gene name LOC106602976
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48022058 ~ 48029576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618818.2
TTTAGCCTTGGTCCCAGCCAGGTTTGTTTCTCTCCAAACTGAATGGAAAATATAAGGAAGACAGAGCAGAGGAATGCGAGGAACTTCTGAATCACAGCTACACAGAGAGATCTCTGCCTGGACAGTCCAGACAGCGCCAACATGGCATGTCAATAGATCTCGGTCTGTTACAGTTGTCTATACTTTAGACGTTTCTGTGGCATTTGGACATCCAGGGATTAAGTGGAATTTACAGCAGGCATATTCAGCATAACCTCTCACACGACAGGGGATCGGAAAGATTAAGATGCAGGAGGACCCGGTGTATGATTTCCCTGAGCCGGTCGGGGAGCTGGTAGGAGAGAGGCGGGCTTGTCCTCAGCGTGGCTCCCTGAAGAACATCAGTGTGCTGGACCGTCTGCTTCTCACACACCCCGTCTGGCTGCAGCTGTCCATCAACTCTGCCACCGCTCTGCACATCCTACAGCGGGAGCCGCCTGGGACCTTTCTGGTGCGCAAGTCCAACACCTCGCAGAAGAAAGTGCTGTGTGTCAGGCTTGCAGACGACAGCGTTCCCTCCTTTGTCAAACAATTTGTCATCCGCGAAGTGGACTCCACCTTCTCTTTGGAGAAAGCGGCTATCGGTTTCCCTGACCTCTTCCGGCTCATTGCCTTCTACTGTGTTAGCCGGGATGTGTTGCCCTTCCCACTGGAGCTCCCTGAGGCCATAGTCAAGGCTTCATCCCACAAACAGCTGGAGTCCATTTCACACATGGGCGTGGAGTTCTGGAGTTCCCAGCTGAACTTCAGAGGTCCACGCAATGGGCCCCCACCAGTCGAGGCGGCACCGCTGCCCCCTAGCCCCACCCCTGAGGACTGTGCCACGCCCCAGGAAAGCCCCACCCTGTTCCAGGAGTTCTGCCCCATCCAAACACGCAGCCCCCGGGAGCTGAACTGTGGGGCAGCAGGCCAAGGGGCTCTCTGTTTCATCAACCCACTCTTCCTGCAATCCCATCCTGCACTGCACAAACGCCACCAGTTCAAGCGCAGCCTCAAGGTGCGTGTCTCGACTGAGAACTCTAGCCCTTTGTCCCCACCAGttgcccctccccctcccccacctctgcTGGCCAAGAAAAATATTAAGAGCAAGAAGGTCCAGCGGGCCAGTGGAGCAGTGGAAGCCAgagtggagggtgagggagggacagCACCCGTCCAGGAGGACTCAGACTATTTGCAGCCATGCTTGGTTCTTCCAGTTCTTCCGCAGAAGACCAGGGTCACACCCACACTGTCTCCCACTGCAGAGGAGGACTACCATGTGCCATTAGGTCTCCTGCAGGGACTGGCCCAGGAaaaaggaggtgaggaggaggtggGTCTCCTGCTGGAGCAGAGGTATGCTCCCTCCCTGAGTGAGCTGGACAGCAGCAGTTCCCTCAGCAGcctggaggaggcagaggagagctCAGAGCGAATTCCCCTCACCAGGGGTACCAGTAACCCCTCACCCCCATGCACCTTGCCCCCACGCCAGCCCGTCTCAGTCCTGCGCAAGCTGAGTGCAGTCTTCGTGTCCTTCTTCGTGCCAGAGAAGCGTGTGGCGAGGCTGGTGGAGGACCTGTCCCGTGACAGGAGGATTGCGTTTGGTGTCCTGGTGCAGGATTTCCTCAGGCAGCAGCGGGAGGCGATCAAGCCTCAGTGCCAGAGATCTAGCGTAGAGCTACTGCAGGGCATTCGCTTCTTCCTCTCCCAGGCCAAGACCTTCCTGCTGGACTGTGGAGACCTAGAACCCCCAATTGAGACCATGGTGCCTGATGATGAGAAAGacCTGGTGCTGGAGAAAGCCATGTTCCGCTGTGTGCTGAAACCTCTGAAGGGACAGATAGACAGGACACTGCAAACTCTGCATGAGCGAGACGGTTCCACCCAGAGCATGGCAGAGAGCCTGGCTGTGGCCAGGGGAAAGACCCCGTTGGAGTGTTTTGGAGTGCGGGTGGGAGTGCCGGATGCTGCCGGTGTGGAGAAGGTGCGGCAGAAGTTAGCTCTCATGAGGCGGGCTTACTCGCCCATTGACAAGGTTGTGCTGCTACTGCAGGTCTGCAAGCTCATCTATAAAGCCATGACGGACAATTCAGGCAAGGAATTCGGTGCAGATGACTTCCTACCAGCCCTGTCCTATGTCATTGTACAGTGTAACATGCCAGAGCTGTCTGTGGAGGTGGAGTACATGATGGAGCTGCTGGAGTCATCGTGGCTGACAGGGGAGGGTGGGTACTACCTGACCAGTGTGTATGCCAGCCTGTGCCTGATCCAGAGCCTGCCTGAAGAAATGCCCTCTAGCGGGCTGACCCAGGGGGCCAGAGACTCCCTGAAAGACTGGAGCCGGCGCCGGAGCAGCCAGGCTCTGAGCCAGAAAAAAATACATGAGCAACTGAGGTTTGTCAAGGTTCTGTTTCAAGATGGAGAAAGCAGCTGGATAAAAACCCTGCAGTGGAGGGCAGGAGTTAGTGGGGAGGCCCTGACCCAGCTCTGTGCTGCTAAGTTTGGGGTGGACGACCCAGGACTGTTCAAGCTGTACTGGCGGAGTGAGGGGGAGATTCAAGCCCTCCCAGCCCAGGCCCAGATCCAGGACCTACAGGGCCAAGGCAGCAGTGGAACACCCCTCATATACCAGAAAGCCAAACAGGATGGACTCAAGACTTGCAAACTAACAAGAGAGGCGGCTGTGGACCTTGTGGAATCACCTTGAGTACCCAAGCGTTGTGAACGTTTTCTTAAACCCCACTCAACTGCAAGAAAGACTTGCTTCGTGCTTTATTCTTAAAATATGTTAAATGAACATTTGCCTGGGTGGATATTGCAAAGTACCTTAGACATTCTGTTTACCATTTTCCCTAAGTGTAAATTATAAACTGGTGGGTTCGAGCccggaatgctgattggctgacagccgtggtatatcagaccgtataccacgtgtgtgacaaaagttatttttactgctctaattacgttggtaaacagtttataatagcagtaaggtaCCTtggggggtttgtgatatatggccaatctaccatggctaagggctgtgtccaggcactccgcgatgCCCTTATTTCAATGTGTATCAGTTCATGCAGCTCATTACACAAGCTCCCCGAGATACCTTTAATAATGCATGAGAAACAAACTGAACAGACATTGAtattaaaataacaaaaaatgacattt
>XM_036933238.1
TAGCCTTGGTCCCAGCCAGGTTTGTTTCTCTCCAAACTGAATGGAAAATATAAGGAAGACAGAGCAGAGGAATGCGAGGAACTTCTGAATCACAGCTACACAGAGAGATCTCTGCCTGGACAGTCCAGACAGCGCCAACATGGCATGTCAATAGATCTCGGTCTGTTACAGTTGTCTATACTTTAGACGTTTCTGTGGCATTTGGACATCCAGGGATTAAGTGGAATTTACAGCAGGCATATTCAGCATAACCTCTCACACGACAGGGGATCGGAAAGATTAAGATGCAGGAGGACCCGGTGTATGATTTCCCTGAGCCGGTCGGGGAGCTGGTAGGAGAGAGGCGGGCTTGTCCTCAGCGTGGCTCCCTGAAGAACATCAGTGTGCTGGACCGTCTGCTTCTCACACACCCCGTCTGGCTGCAGCTGTCCATCAACTCTGCCACCGCTCTGCACATCCTACAGCGGGAGCCGCCTGGGGTGAGTCACGCACGCACACCGCACTGACgcgcacacacaaaacacaacctAAGTGTGTATATCTCTGCCTTTCTGTAGACCTTTCTGGTGCGCAAGTCCAACACCTCGCAGAAGAAAGTGCTGTGTGTCAGGCTTGCAGACGACAGCGTTCCCTCCTTTGTCAAACAATTTGTCATCCGCGAAGTGGACTCCACCTTCTCTTTGGAGAAAGCGGCTATCGGTTTCCCTGACCTCTTCCGGCTCATTGCCTTCTACTGTGTTAGCCGgtgcatggcaacagttgaataagatgagaaaaaagaagaaacccgcacactgctGTTTCCCGATGGCCTTGatggccgatacgtaaagctaaATAAAGAGCAGTGTTTCTTGGCTTCACTGTAGAATGGGTTTAGGGCATTTAGACAACTAATGTCAACCAGTGTTATCCATCTAGATCTGCATTATCTCTCATTATTGGTCCAAATCATAACCTACTAGAATTAGACCTGTTTATAAAACCCATGTGCTGTCTATTTCAGGGATGTGTTGCCCTTCCCACTGGAGCTCCCTGAGGCCATAGTCAAGGCTTCATCCCACAAACAGCTGGAGTCCATTTCACACATGGGCGTGGAGTTCTGGAGTTCCCAGCTGAACTTCAGAGGTCCACGCAATGGGCCCCCACCAGTCGAGGCGGCACCGCTGCCCCCTAGCCCCACCCCTGAGGACTGTGCCACGCCCCAGGAAAGCCCCACCCTGTTCCAGGAGTTCTGCCCCATCCAAACACGCAGCCCCCGGGAGCTGAACTGTGGGGCAGCAGGCCAAGGGGCTCTCTGTTTCATCAACCCACTCTTCCTGCAATCCCATCCTGCACTGCACAAACGCCACCAGTTCAAGCGCAGCCTCAAGGTGCGTGTCTCGACTGAGAACTCTAGCCCTTTGTCCCCACCAGttgcccctccccctcccccacctctgcTGGCCAAGAAAAATATTAAGAGCAAGAAGGTCCAGCGGGCCAGTGGAGCAGTGGAAGCCAgagtggagggtgagggagggacagCACCCGTCCAGGAGGACTCAGACTATTTGCAGCCATGCTTGGTTCTTCCAGTTCTTCCGCAGAAGACCAGGGTCACACCCACACTGTCTCCCACTGCAGAGGAGGACTACCATGTGCCATTAGGTCTCCTGCAGGGACTGGCCCAGGAaaaaggaggtgaggaggaggtggGTCTCCTGCTGGAGCAGAGGTATGCTCCCTCCCTGAGTGAGCTGGACAGCAGCAGTTCCCTCAGCAGcctggaggaggcagaggagagctCAGAGCGAATTCCCCTCACCAGGGGTACCAGTAACCCCTCACCCCCATGCACCTTGCCCCCACGCCAGCCCGTCTCAGTCCTGCGCAAGCTGAGTGCAGTCTTCGTGTCCTTCTTCGTGCCAGAGAAGCGTGTGGCGAGGCTGGTGGAGGACCTGTCCCGTGACAGGAGGATTGCGTTTGGTGTCCTGGTGCAGGATTTCCTCAGGCAGCAGCGGGAGGCGATCAAGCCTCAGTGCCAGAGATCTAGCGTAGAGCTACTGCAGGGCATTCGCTTCTTCCTCTCCCAGGCCAAGACCTTCCTGCTGGACTGTGGAGACCTAGAACCCCCAATTGAGACCATGGTGCCTGATGATGAGAAAGacCTGGTGCTGGAGAAAGCCATGTTCCGCTGTGTGCTGAAACCTCTGAAGGGACAGATAGACAGGACACTGCAAACTCTGCATGAGCGAGACGGTTCCACCCAGAGCATGGCAGAGAGCCTGGCTGTGGCCAGGGGAAAGACCCCGTTGGAGTGTTTTGGAGTGCGGGTGGGAGTGCCGGATGCTGCCGGTGTGGAGAAGGTGCGGCAGAAGTTAGCTCTCATGAGGCGGGCTTACTCGCCCATTGACAAGGTTGTGCTGCTACTGCAGGTCTGCAAGCTCATCTATAAAGCCATGACGGACAATTCAGGCAAGGAATTCGGTGCAGATGACTTCCTACCAGCCCTGTCCTATGTCATTGTACAGTGTAACATGCCAGAGCTGTCTGTGGAGGTGGAGTACATGATGGAGCTGCTGGAGTCATCGTGGCTGACAGGGGAGGGTGGGTACTACCTGACCAGTGTGTATGCCAGCCTGTGCCTGATCCAGAGCCTGCCTGAAGAAATGCCCTCTAGCGGGCTGACCCAGGGGGCCAGAGACTCCCTGAAAGACTGGAGCCGGCGCCGGAGCAGCCAGGCTCTGAGCCAGAAAAAAATACATGAGCAACTGAGGTTTGTCAAGGTTCTGTTTCAAGATGGAGAAAGCAGCTGGATAAAAACCCTGCAGTGGAGGGCAGGAGTTAGTGGGGAGGCCCTGACCCAGCTCTGTGCTGCTAAGTTTGGGGTGGACGACCCAGGACTGTTCAAGCTGTACTGGCGGAGTGAGGGGGAGATTCAAGCCCTCCCAGCCCAGGCCCAGATCCAGGACCTACAGGGCCAAGGCAGCAGTGGAACACCCCTCATATACCAGAAAGCCAAACAGGATGGACTCAAGACTTGCAAACTAACAAGAGAGGCGGCTGTGGACCTTGTGGAATCACCTTGAGTACCCAAGCGTTGTGAACGTTTTCTTAAACCCCACTCAACTGCAAGAAAGACTTGCTTCGTGCTTTATTCTTAAAATATGTTAAATGAACATTTGCCTGGGTGGATATTGCAAAGTACCTTAGACATTCTGTTTACCATTTTCCCTAAGTGTAAATTATAAACTGGTGGGTTCGAGCccggaatgctgattggctgacagccgtggtatatcagaccgtataccacgtgtgtgacaaaagttatttttactgctctaattacgttggtaaacagtttataatagcagtaaggtaCCTtggggggtttgtgatatatggccaatctaccatggctaagggctgtgtccaggcactccgcgatgCCCTTATTTCAATGTGTATCAGTTCATGCAGCTCATTACACAAGCTCCCCGAGATACCTTTAATAATGCATGAGAAACAAACTGAACAGACATTGAtattaaaataacaaaaaatgacattt
>XM_036933237.1
TGTCATGTCGCCATTTATTTTAAAGTGTAAAATAAGAAACAGTTGAATCTTTGTTTGATTACTGAAATCACGAGACCTGTTACCGATTAACTGAAGATGCAGGAGGACCCGGTGTATGATTTCCCTGAGCCGGTCGGGGAGCTGGTAGGAGAGAGGCGGGCTTGTCCTCAGCGTGGCTCCCTGAAGAACATCAGTGTGCTGGACCGTCTGCTTCTCACACACCCCGTCTGGCTGCAGCTGTCCATCAACTCTGCCACCGCTCTGCACATCCTACAGCGGGAGCCGCCTGGGACCTTTCTGGTGCGCAAGTCCAACACCTCGCAGAAGAAAGTGCTGTGTGTCAGGCTTGCAGACGACAGCGTTCCCTCCTTTGTCAAACAATTTGTCATCCGCGAAGTGGACTCCACCTTCTCTTTGGAGAAAGCGGCTATCGGTTTCCCTGACCTCTTCCGGCTCATTGCCTTCTACTGTGTTAGCCGGGATGTGTTGCCCTTCCCACTGGAGCTCCCTGAGGCCATAGTCAAGGCTTCATCCCACAAACAGCTGGAGTCCATTTCACACATGGGCGTGGAGTTCTGGAGTTCCCAGCTGAACTTCAGAGGTCCACGCAATGGGCCCCCACCAGTCGAGGCGGCACCGCTGCCCCCTAGCCCCACCCCTGAGGACTGTGCCACGCCCCAGGAAAGCCCCACCCTGTTCCAGGAGTTCTGCCCCATCCAAACACGCAGCCCCCGGGAGCTGAACTGTGGGGCAGCAGGCCAAGGGGCTCTCTGTTTCATCAACCCACTCTTCCTGCAATCCCATCCTGCACTGCACAAACGCCACCAGTTCAAGCGCAGCCTCAAGGTGCGTGTCTCGACTGAGAACTCTAGCCCTTTGTCCCCACCAGttgcccctccccctcccccacctctgcTGGCCAAGAAAAATATTAAGAGCAAGAAGGTCCAGCGGGCCAGTGGAGCAGTGGAAGCCAgagtggagggtgagggagggacagCACCCGTCCAGGAGGACTCAGACTATTTGCAGCCATGCTTGGTTCTTCCAGTTCTTCCGCAGAAGACCAGGGTCACACCCACACTGTCTCCCACTGCAGAGGAGGACTACCATGTGCCATTAGGTCTCCTGCAGGGACTGGCCCAGGAaaaaggaggtgaggaggaggtggGTCTCCTGCTGGAGCAGAGGTATGCTCCCTCCCTGAGTGAGCTGGACAGCAGCAGTTCCCTCAGCAGcctggaggaggcagaggagagctCAGAGCGAATTCCCCTCACCAGGGGTACCAGTAACCCCTCACCCCCATGCACCTTGCCCCCACGCCAGCCCGTCTCAGTCCTGCGCAAGCTGAGTGCAGTCTTCGTGTCCTTCTTCGTGCCAGAGAAGCGTGTGGCGAGGCTGGTGGAGGACCTGTCCCGTGACAGGAGGATTGCGTTTGGTGTCCTGGTGCAGGATTTCCTCAGGCAGCAGCGGGAGGCGATCAAGCCTCAGTGCCAGAGATCTAGCGTAGAGCTACTGCAGGGCATTCGCTTCTTCCTCTCCCAGGCCAAGACCTTCCTGCTGGACTGTGGAGACCTAGAACCCCCAATTGAGACCATGGTGCCTGATGATGAGAAAGacCTGGTGCTGGAGAAAGCCATGTTCCGCTGTGTGCTGAAACCTCTGAAGGGACAGATAGACAGGACACTGCAAACTCTGCATGAGCGAGACGGTTCCACCCAGAGCATGGCAGAGAGCCTGGCTGTGGCCAGGGGAAAGACCCCGTTGGAGTGTTTTGGAGTGCGGGTGGGAGTGCCGGATGCTGCCGGTGTGGAGAAGGTGCGGCAGAAGTTAGCTCTCATGAGGCGGGCTTACTCGCCCATTGACAAGGTTGTGCTGCTACTGCAGGTCTGCAAGCTCATCTATAAAGCCATGACGGACAATTCAGGCAAGGAATTCGGTGCAGATGACTTCCTACCAGCCCTGTCCTATGTCATTGTACAGTGTAACATGCCAGAGCTGTCTGTGGAGGTGGAGTACATGATGGAGCTGCTGGAGTCATCGTGGCTGACAGGGGAGGGTGGGTACTACCTGACCAGTGTGTATGCCAGCCTGTGCCTGATCCAGAGCCTGCCTGAAGAAATGCCCTCTAGCGGGCTGACCCAGGGGGCCAGAGACTCCCTGAAAGACTGGAGCCGGCGCCGGAGCAGCCAGGCTCTGAGCCAGAAAAAAATACATGAGCAACTGAGGTTTGTCAAGGTTCTGTTTCAAGATGGAGAAAGCAGCTGGATAAAAACCCTGCAGTGGAGGGCAGGAGTTAGTGGGGAGGCCCTGACCCAGCTCTGTGCTGCTAAGTTTGGGGTGGACGACCCAGGACTGTTCAAGCTGTACTGGCGGAGTGAGGGGGAGATTCAAGCCCTCCCAGCCCAGGCCCAGATCCAGGACCTACAGGGCCAAGGCAGCAGTGGAACACCCCTCATATACCAGAAAGCCAAACAGGATGGACTCAAGACTTGCAAACTAACAAGAGAGGCGGCTGTGGACCTTGTGGAATCACCTTGAGTACCCAAGCGTTGTGAACGTTTTCTTAAACCCCACTCAACTGCAAGAAAGACTTGCTTCGTGCTTTATTCTTAAAATATGTTAAATGAACATTTGCCTGGGTGGATATTGCAAAGTACCTTAGACATTCTGTTTACCATTTTCCCTAAGTGTAAATTATAAACTGGTGGGTTCGAGCccggaatgctgattggctgacagccgtggtatatcagaccgtataccacgtgtgtgacaaaagttatttttactgctctaattacgttggtaaacagtttataatagcagtaaggtaCCTtggggggtttgtgatatatggccaatctaccatggctaagggctgtgtccaggcactccgcgatgCCCTTATTTCAATGTGTATCAGTTCATGCAGCTCATTACACAAGCTCCCCGAGATACCTTTAATAATGCATGAGAAACAAACTGAACAGACATTGAtattaaaataacaaaaaatgacattt

Function

NR:

description
ras and Rab interactor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618818.2 False 3219 mRNA 0.54 10 48022058 48029576
XM_036933238.1 False 3556 mRNA 0.53 9 48022060 48029576
XM_036933237.1 True 3029 mRNA 0.54 10 48022352 48029576

Neighbor

gene id symbol gene type direction distance location
LOC110534131 LOC106602979 coding upstream 34609 47963435 ~ 47987449 (+)
cfb LOC106602980 coding upstream 71597 47937363 ~ 47950461 (+)
LOC110534126 LOC106602983 coding upstream 116750 47901559 ~ 47905308 (+)
LOC110534124 LOC106602984 coding upstream 134780 47857490 ~ 47887278 (+)
LOC110533130 LOC106602987 coding upstream 172779 47426618 ~ 47849279 (+)
trnas-gcu-8 NA coding downstream 12476 48042052 ~ 48042133 (+)
LOC110534142 mcf2 coding downstream 113552 48143128 ~ 48158290 (+)
LOC110534145 fgf13 coding downstream 139426 48169002 ~ 48187520 (+)
LOC110534146 zic3 coding downstream 171809 48201242 ~ 48205374 (+)
LOC110534150 snx12 coding downstream 264609 48294185 ~ 48305120 (+)
G896124 LOC106602978 non-coding upstream 1396 48020307 ~ 48020662 (+)
G896060 LOC106602978 non-coding upstream 3146 48018042 ~ 48018912 (+)
G896055 NA non-coding upstream 4155 48012060 ~ 48017903 (+)
G896122 NA non-coding upstream 10984 48010861 ~ 48011074 (+)
G896056 NA non-coding upstream 32710 47989133 ~ 47989348 (+)
G896128 NA non-coding downstream 11934 48041510 ~ 48041762 (+)
G896130 NA non-coding downstream 13075 48042651 ~ 48042875 (+)
G896132 NA non-coding downstream 14192 48043768 ~ 48043981 (+)
G896058 LOC106602975 non-coding downstream 17314 48046890 ~ 48049851 (+)
G896146 f9 non-coding downstream 68560 48098136 ~ 48160174 (+)
G896043 NA other upstream 111083 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 804987 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 817216 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 870509 47132135 ~ 47151549 (+)
G895515 NA other upstream 979275 47040514 ~ 47042783 (+)
G896217 NA other downstream 205606 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 646681 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1248126 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1400823 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 2005414 50034990 ~ 50037685 (+)

Expression


Co-expression Network