LOC110533132 (LOC106603010)


Basic Information

Item Value
gene id LOC110533132
gene name LOC106603010
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48121001 ~ 48123528 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617222.2
CTAAGGTTATACAAGAAAACCTCTGGGAATGGCACACTCACCCTTTACCTGGGAAAGAGAGACTATGTCGACCATGTTCAGAATGTGGACCCTATCGAGGGAGTGGTGAAACTTGATCCTGCAAGCCTTGCAGGCAGGAAAGTGTTTGTGAAGCTGGCGTGTGCCTTCCATTACGGCCGCGAGGACCTGGATGTCATTGGACTGTCCTTTAGGAAAGACATCTGGGTCAAGCACATCCAGTTGTACCCTGATGCTGGCCACAAACCCAACCTCACTCCCATGCACGTTTGCCTGCTCAAGAAGGCAGGAGAGCAGGGCCGTGCCTTCACTTTCGATATTGCCACAAACCTTCCCTGCTCTGTCACACTCCAGCCAGGACAAGATAATGCTGGAAAGGCTTGCGGTGTGGACTTTGAAGTCAAGACGTACATTGCAACTGAGGCAGACCCCGAAGAGAAACTTGATAGGAAGGACACTGCCCGCATGACCGTCCGTAAGATCCAGTTTGCCCCAGACGAGACTGGTGCTCCTGGGCCCAGGGCCGACATCTGCAAGAGCTTCATGATGTCGGACAAGCCTGTCCACCTACAGGCCTCGCTGGAAAAGGAGATCTACTATCATGGAGATCCGATCGACGTCAACATCAAAGTCAAAAATGAAACCTCCAGAACAGTGACAAAAATCAAAATCATAGTTGAGCAAACTACAGACGTGGTTCTCTACTCCGCAGACAAATACACCAAAACCGTACTTTCTCAAGACTTTGGAGAGACAATAGATGCCAATAGCACATTCGATAAATCCCTTGCCATCACCCCCTTACTGGCCGAAAACAAGAAGAAGCGCGGCCTGGCGCTGGAAGGCAGACTGAAGGACGAGGACACGAACCTGGCCTCCAACACTATTATTAGAGCCGGTATGGATAAGGAAGTGTTGGGAATCTTGGTCTCCTACAAAATCAAGGTCAACTTGATGGTGTCTTCAGGAGGCTTGTTGGGAGGTCTCACAGCCAGTGACATACAGGTGGAGCTCCCGCTGATTCTCATGCATCCCAAACCCCAAGAGTAG

Function

NR:

description
arrestin-C-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617222.2 True 1068 mRNA 0.51 12 48121001 48123528

Neighbor

gene id symbol gene type direction distance location
LOC110534140 LOC106602970 coding downstream 7638 48108673 ~ 48113363 (-)
fam89b fam89b coding downstream 12554 48104429 ~ 48108447 (-)
LOC110534139 LOC106602972 coding downstream 19128 48075787 ~ 48101873 (-)
LOC110534137 LOC106602974 coding downstream 46454 48070333 ~ 48074547 (-)
LOC110534136 LOC106602975 coding downstream 71096 48046887 ~ 48049905 (-)
f9b f9 coding upstream 35010 48158538 ~ 48163848 (-)
LOC110534147 LOC106602966 coding upstream 83378 48206906 ~ 48213074 (-)
htatsf1 LOC100135780 coding upstream 102198 48225726 ~ 48233416 (-)
LOC110533133 LOC106602963 coding upstream 123617 48247145 ~ 48255449 (-)
LOC118936699 LOC106602963 coding upstream 136798 48260326 ~ 48262871 (-)
G896924 NA non-coding downstream 75874 48044847 ~ 48045127 (-)
G896923 NA non-coding downstream 76479 48044196 ~ 48044522 (-)
G896914 NA non-coding downstream 97700 48023050 ~ 48023301 (-)
G896913 NA non-coding downstream 98468 48022074 ~ 48022533 (-)
LOC110534135 LOC106602978 non-coding downstream 103425 48012083 ~ 48021620 (-)
G896998 NA non-coding upstream 90261 48213789 ~ 48213995 (-)
G897005 NA non-coding upstream 98402 48221930 ~ 48222254 (-)
G897007 NA non-coding upstream 100266 48223794 ~ 48224211 (-)
G897008 NA non-coding upstream 100765 48224293 ~ 48224717 (-)
G897011 NA non-coding upstream 112571 48236099 ~ 48236414 (-)
G896841 NA other downstream 131925 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 887955 47203241 ~ 47234608 (-)
G894917 NA other downstream 2202662 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2370670 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3104954 45011329 ~ 45017446 (-)
LOC110534172 LOC106602940 other upstream 758199 48881449 ~ 48907973 (-)
G899409 NA other upstream 2032664 50156192 ~ 50156902 (-)
G899421 NA other upstream 2058868 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2341939 50463950 ~ 50482534 (-)
G899727 NA other upstream 2597458 50720986 ~ 50721603 (-)

Expression


Co-expression Network