LOC110534146 (zic3)


Basic Information

Item Value
gene id LOC110534146
gene name zic3
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48201242 ~ 48205374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618851.2
TTTGGTGTCACTACAGACGCTTATGGGACATGCAGGCTACCAATTTGCATTGAAGAAATAGCTTGTCAATGAATTCACTGTGCGAAAAATCACGTGCCAAGAGGTTATCTTGGATGTCATTGGTTACTGTATGGGTGCTGCCGTTGTCGTATTTTGGTAGAGTGATTGACTTGAATCGACCAAATACATTTAGGCTACTATAGCCTACGTAATCGAAAGTGTTAGGAGTTTGACCCCCTCTCACTTTGTACCCTCTGAAAAGCTTGGTTTCAATGAATGTTGTGGGTTAGCCAACATTTAACAGATTGGAAGCATACATACGATTTTCGCGCAGTATGGCCATGTTGGAGACCATTTGGCTGTTATGAAGCTGTAAAAGGTTTCCGTATTGCTTTATTTCTTTTCCATCTTCTGTGCTTCAATGACCAAGCTAGTTGACGATGGTGCGCAATTCTCCGCGCTTGTTGTCGGGGGCGTTGGAATACCAAGACAACATGAACCGGGGGACAACGACGTTCGGTTAGGGATCAGCCCGTATGGAGAGACCTCTCACTTCGCAGCCTTCAATTTCATTGCCCCCGCACAGAAGTCCCAGTTAATTCCCCAAGTCTCCGGATACGCAGCTGCGCTAGGAAGCCACTGCGGAGGGCACATCGGTTCACATGGATACAGAGCTATCGATTCCAGGAATATTACGTTTACCTATCGCACTCCAGACATTGCCGATTCCGCAGCAAGAGATACTCGACACGGATTTTTAAGCCGCACCGCAACAGGAAGTGTGCGAATTCCCCCAAGGATCTCTGAAAACCGAGCGCACACTCTCTTTTCATCTATAGGTGAACAGAGCGCATTCCCAAATGGATACATGGCGAATAGCAGGGCGCATTTGGGTACACGGGGAGACATATTCGTGGGAGCAGATCCGCATCAACCTGTCTCGAGCCCGCACCCGCATTTCAGTGATACCCAGCTCCACTTTGATCACAATGTGGACATGGGCATGAGAGTGACAACACAGACTGGTCACGGTGCTTTCTTTCGATACATGCGACAGCACTCTAAGCAGGATGTCACTTGTAAATGGATAGATGCGAATCAGACGAATCAACTCCAAAAAACCTGCGGCAAGATGTTTTGCTGTATGTCCGAGCTGGTTACGCACGTCTCCATGGATCACGTCCGCGGTCCAGACCAGAGTCTGCATACTTGCTTTTGGGAGGATTGTCCGAGAGAAGGCAAATCTTTTAAAGCGAAGTATAAATTAGTCAACCACATTCGTGTACACACTGGAGAAAAGCCATTCAATTGCCCCTTTCATGGCTGTGGGAAAATGTTTGCCAGGTCGGAAAATTTGAAAATACATAAAAGGATTCATACGGGTGAGAAGCCCTTCAAATGCGAATTCGAAGGCTGCGACAGGCGGTTCGCAAATAGCAGCGACAGAAAAAAACACATGCACGTTCATACCTCAGACAAGCCATACATCTGCAAGCTGTGCGACAAGGCCTACACTCATCCCAGCTCTCTGAGGAAACACTCGAAGGTTCACAAATCTCAAACCTCCGAGAACTCCCCAACGGGAACGTCTGGATATGAGTCGTCCACGCCACCAGCTCCGTGTAGACCTACATCCTCAACCATCAAAGACTCGACAGAAACATCCATGCTGCTGGTCAAGCGTCATAAGTCAATATTTAAAGAGGATCTCTCAACCGATTTGGTTGAATGGTACGTTTGAAAGGGTTAACTGTCCAAGTGTAAACACTAAAACGTCAATAGAATTAGGAACACAGGCCTATCGGACTACGTTTGCCAAGTTTTCAACAAAGTTATAGAAAACACAGGGTATAGGCCTATGCATTGCCTTGGTGTTACGCTTTAAAGGCGCCATCATGAAATGTTGTAATTTTGGAGTAATTTCTATTTTCAAGGAAAAGGCCAAGGAAAAGTCTTATCCTTGGCCTACACATTGACTGTATAACAGAGGAAAATGTGAGCCACGCAAAGCCTTTAAATTAATAGACAGGCCTCTCTGTATAAGCCTATAGGCTActgataaataaacaaataaatgaatACATGAAAGAAAAATATACAAAATTAATAAGCAAAAGTCAAATAGGCCTATAGAAACCAAATGTAtaaaaagaaagaaggaaagcaGATGACCGAGGAAATATATTAATAAATAGAGTTGAAGAACAGTATAGGCCTATTTGCATTGTTGATAGGCTAGCGCTAGCCTATTTGAGCTATTTTGTCAGAATCCGTTTTCAGACAGAAAACGATAGGTCTACTGTGGTCGACATTCCATGTCGCCTTTAGAAAAGAACAGCATAAAAATGAATGGCTTTATTTCTCTATCTTAAAATATACCGTTTATAATATCAtttatttcattgtatttttgtTGGAACGTATTATAATGTTGGTGtatacatttatggatataaataaatcaaatacaaattataTTTCTAAGAGGCATGCAACTTGGGTCAACTTTAGTAAGAAATATGTTTATGGGCATTTTATACGATGTTGAGTCTAATAACTTAGGTAAGATAAGATCCATTTGTATAGATGTTTAGGCGTTTATTTTTTTAGATTCTGGAGTCGTAACCTACCttttgctaaatgactcccacATCCAGTGTTTGAGGACTATGCTAAAGTTAACAACCCATTACTGCCCACAagacacaaaataatctgaaagtATTCAGTTGAACGTCAAGGGAAAGGTTTTAAACAAGCAATTTAAATACATCTGGTACAGGACTAGTATGTTGTTCAGTTCGTCAAAACTAGCATCAGATTTAGACTCAAGTAGGCATCTGTTGTTTTCCCCGCTGGAATTCAAAAATTAAATGAAAGCTAAATGTAAACTACCATAGAACAAGGAAAAAGTTTCATAAATATCAGGAAGAATATAATAATAAATTACATAAATCTGAcctttaaaaacaaacaaaaaatggtgGCCTTTATTTTATGGCTCGTTGATTTGTTGGAAAGGATTCCATCGGTGCAGTGTATCCCAAAATGGCCAATAAATTGGTACTACTTTAA
>TU1019649
CGATctaaagcagcagcagcatcattgCAGGTAGTGGTGGTAATTAGGGTCAAGCGTATAGCAATGACGCAAAGCAGAGTCATGGAAGACATGGGAATAAAGGTGAGAAGCCCTTCAAATGCGAATTCGAAGGCTGCGACAGGCGGTTCGCAAATAGCAGCGACAGAAAAAAACACATGCACGTTCATACCTCAGACAAGCCATACATCTGCAAGCTGTGCGACAAGGCCTACACTCATCCCAGCTCTCTGAGGAAACACTCGAAGGTTCACAAATCTCAAACCTCCGAGAACTCCCCAACGGGAACGTCTGGATATGAGTCGTCCACGCCACCAGCTCCGTGTAGACCTACATCCTCAACCATCAAAGACTCGACAGAAACATCCATGCTGCTGGTCAAGCGTCATAAGTCAATATTTAAAGAGGATCTCTCAACCGATTTGGTTGAATGGTACGTTTGAAAGGGTTAACTGTCCAAGTGTAAACACTAAAACGTCAATAGAATTAGGAACACAGGCCTATCGGACTACGTTTGCCAAGTTTTCAACAAAGTTATAGAAAACACAGGGTATAGGCCTATGCATTGCCTTGGTGTTACGCTTTAAAGGCGCCATCATGAAATGTTGTAATTTTGGAGTAATTTCTATTTTCAAGGAAAAGGCCAAGGAAAAGTCTTATCCTTGGCCTACACATTGACTGTATAACAGAGGAAAATGTGAGCCACGCAAAGCCTTTAAATTAATAGACAGGCCTCTCTGTATAAGCCTATAGGCTActgataaataaacaaataaatgaatACATGAAAGAAAAATATACAAAATTAATAAGCAAAAGTCAAATAGGCCTATAGAAACCAAATGTAtaaaaagaaagaaggaaagcaGATGACCGAGGAAATATATTAATAAATAGAGTTGAAGAACAGTATAGGCCTATTTGCATTGTTGATAGGCTAGCGCTAGCCTATTTGAGCTATTTTGTCAGAATCCGTTTTCAGACAGAAAACGATAGGTCTACTGTGGTCGACATTCCATGTCGCCTTTAGAAAAGAACAGCATAAAAATGAATGGCTTTATTTCTCTATCTTAAAATATACCGTTTATAATATCAtttatttcattgtatttttgtTGGAACGTATTATAATGTTGGTGtatacatttatggatataaataaatcaaatacaaattataTTTCTAAGAGGCATGCAACTTGGGTCAACTTTAGTAAGAAATATGTTTATGGGCATTTTATACGATGTTGAGTCTAATAACTTAGGTAAGATAAGATCCATTTGTATAGATGTTTAGGCGTTTATTTTTTTAGATTCTGGAGTCGTAACCTACCttttgctaaatgactcccacATCCAGTGTTTGAGGACTATGCTAAAGTTAACAACCCATTACTGCCCACAagacacaaaataatctgaaagtATTCAGTTGAACGTCAAGGGAAAGGTTTTAAACAAGCAATTTAAATACATCTGGTACAGGACTAGTATGTTGTTCAGTTCGTCAAAACTAGCATCAGATTTAGACTCAAGTAGGCATCTGTTGTTTTCCCCGCTGGAATTCAAAAATTAAATGAAAGCTAAATGTAAACTACCATAGAACAAGGAAAAAGTTTCATAAATATCAGGAAGAATATAATAATAAATTACATAAATCTGAcctttaaaaacaaacaaaaaatggtgGCCTTTATTTTATGGCTCGTTGATTTGTTGGAAAGGATTCCATCGGTGCAGTGTATCCCAAAATGGCC

Function

symbol description
zic3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within anterior/posterior axis specification and determination of left/right symmetry. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesoderm; neural keel; neural plate; and presumptive structure. Used to study right atrial isomerism; spina bifida; and visceral heterotaxy. Human ortholog(s) of this gene implicated in X-linked VACTERL association; situs inversus; and visceral heterotaxy. Orthologous to human ZIC3 (Zic family member 3).

NR:

description
zinc finger protein ZIC 3-like

GO:

id name namespace
GO:0007389 pattern specification process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618851.2 False 3075 mRNA 0.41 3 48201385 48205374
TU1019649 True 1774 lncRNA 0.37 3 48201242 48205353

Neighbor

gene id symbol gene type direction distance location
LOC110534145 fgf13 coding upstream 13865 48169002 ~ 48187520 (+)
LOC110534142 mcf2 coding upstream 43095 48143128 ~ 48158290 (+)
trnas-gcu-8 NA coding upstream 159252 48042052 ~ 48042133 (+)
rin1a LOC106602976 coding upstream 171809 48022058 ~ 48029576 (+)
LOC110534131 LOC106602979 coding upstream 213936 47963435 ~ 47987449 (+)
LOC110534150 snx12 coding downstream 88811 48294185 ~ 48305120 (+)
LOC110534152 LOC106602957 coding downstream 102577 48307951 ~ 48321819 (+)
rab38c LOC106602959 coding downstream 127955 48333329 ~ 48336841 (+)
LOC110534154 LOC106602958 coding downstream 132135 48337509 ~ 48354802 (+)
LOC110534157 LOC106602954 coding downstream 190506 48395880 ~ 48413217 (+)
G896146 f9 non-coding upstream 41211 48098136 ~ 48160174 (+)
G896155 fam89b non-coding upstream 94404 48104479 ~ 48106981 (+)
G896058 LOC106602975 non-coding upstream 151534 48046890 ~ 48049851 (+)
G896132 NA non-coding upstream 157404 48043768 ~ 48043981 (+)
G896130 NA non-coding upstream 158510 48042651 ~ 48042875 (+)
G896210 NA non-coding downstream 12676 48218050 ~ 48218407 (+)
G896212 NA non-coding downstream 14994 48220368 ~ 48220649 (+)
G896226 LOC106602963 non-coding downstream 41855 48247229 ~ 48248088 (+)
LOC110534159 LOC106602952 non-coding downstream 296520 48490263 ~ 48503743 (+)
G897121 NA non-coding downstream 319152 48524526 ~ 48524766 (+)
G896043 NA other upstream 290410 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 984314 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 996543 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1049836 47132135 ~ 47151549 (+)
G895515 NA other upstream 1158602 47040514 ~ 47042783 (+)
G896217 NA other downstream 29808 48235182 ~ 48235616 (+)
G897244 dach2 other downstream 470883 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 1072328 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1225025 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1829616 50034990 ~ 50037685 (+)

Expression


Co-expression Network