htatsf1 (LOC100135780)


Basic Information

Item Value
gene id htatsf1
gene name LOC100135780
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48225726 ~ 48233416 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124178.1
CCGTCAAAGCCAAAGATGAGTGGTGATACTGATGGAAATAAGGAGTTCCATGAGCAGCTCCGGTTGCAGCAGCTGTATGGCCAGAGACAGGGGGACGGAGCTGACCCTAACACCTTCGTGGACCCAGAGGATGGGACAGTGTATGACTGGGACCATGACAAGAAAGCATGGTTTCCTAAAATAACAGAGGACTTCCTTGCTGCGTATCAAGCTAACTACGGCTTCACAAAGGATGGGCAGCATGATCCAAATGCTGCGTGTGCACCTGACACGGACACAACAGCCAAGCCAGAGGAGGGGAAGAAAACCGAGAAGCGCACTGACACGGAACAGCCGAAAGATGGCaaaaaggagaaaggagagaaaaggaaggCTGATACTGCAGCCTGGTTTGATGTGGAAACCGACAAGAATACCAATGTGTACGTGTCAGGTCTTCCACCGGACATCACCACGGAGGAGTTTGTTGAGGTCATGTCTAAGTGTGGCATTGTTATGAGGGACCCCATCTCCGAGGAGTACAAAGTCAAACTCTACAGGGACGGCCAGGGGAACCAGAAAGGCGACGGACTCTGCTGTTACTTAAAGAAGGAGTCTGTGGCCCTGGCTGAGCGACTGATTGACGAGTCAGAGATCAGGGGGTATCAGCTCCACGTGGAGGCTGCCAGGTTCGAGCTCAAGGGCCAGTACGACGCcagtaagaagaagaagaagagcaaGGATTACCGCAAGAGGATGAAGGCACAGCAGAAGCAGCTGGACTGGAGGCCAGAGAAGAAAGGGGAGGCGCGCAAGAGGCATGAACGTGTGCTCATCATCCAGAACATGTTCCACCCCAGTGACTTTGAGGAATTTGTGTAATGAACTAAATGATCTTGGTCTTGATTTGAATACGCTGGGAATGGATACGCAGTTAGGGACCAAGCTTCGGAGAGGTCTGAAACTGAAAGGATTTACATCCAtgtttctcattgtctctcttgAATATAGCAGTGAACTCGATTTCAACCGTAAAAGCTAAAACTCCATCCTGTCCTGTCATGATTTGTTTTGAGATGGAAAATAAACGTAACGTTACCAGTGGC

Function

NR:

description
tFZR1

GO: NA

KEGG:

id description
K13093 HTATSF1; HIV Tat-specific factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124178.1 True 1085 mRNA 0.50 8 48225726 48233416

Neighbor

gene id symbol gene type direction distance location
LOC110534147 LOC106602966 coding downstream 12652 48206906 ~ 48213074 (-)
f9b f9 coding downstream 61878 48158538 ~ 48163848 (-)
LOC110533132 LOC106603010 coding downstream 102198 48121001 ~ 48123528 (-)
LOC110534140 LOC106602970 coding downstream 112363 48108673 ~ 48113363 (-)
fam89b fam89b coding downstream 117279 48104429 ~ 48108447 (-)
LOC110533133 LOC106602963 coding upstream 13729 48247145 ~ 48255449 (-)
LOC118936699 LOC106602963 coding upstream 26910 48260326 ~ 48262871 (-)
fhl1b fhl1 coding upstream 29895 48263311 ~ 48284060 (-)
LOC118936700 LOC106602960 coding upstream 97027 48330443 ~ 48333177 (-)
LOC110534153 LOC106602956 coding upstream 121625 48355041 ~ 48387060 (-)
G897008 NA non-coding downstream 1009 48224293 ~ 48224717 (-)
G897007 NA non-coding downstream 1515 48223794 ~ 48224211 (-)
G897005 NA non-coding downstream 3472 48221930 ~ 48222254 (-)
G896998 NA non-coding downstream 11731 48213789 ~ 48213995 (-)
G896948 NA non-coding downstream 16016 48116856 ~ 48209710 (-)
G897011 NA non-coding upstream 2683 48236099 ~ 48236414 (-)
G897044 NA non-coding upstream 89432 48322848 ~ 48323060 (-)
G897071 NA non-coding upstream 157055 48390471 ~ 48390695 (-)
G897091 NA non-coding upstream 177556 48410972 ~ 48413196 (-)
G897425 LOC106602952 non-coding upstream 265420 48498836 ~ 48501408 (-)
G896841 NA other downstream 236650 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 992680 47203241 ~ 47234608 (-)
G894917 NA other downstream 2307387 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2475395 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3209679 45011329 ~ 45017446 (-)
LOC110534172 LOC106602940 other upstream 648311 48881449 ~ 48907973 (-)
G899409 NA other upstream 1922776 50156192 ~ 50156902 (-)
G899421 NA other upstream 1948980 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2232051 50463950 ~ 50482534 (-)
G899727 NA other upstream 2487570 50720986 ~ 50721603 (-)

Expression


Co-expression Network