LOC118936699 (LOC106602963)


Basic Information

Item Value
gene id LOC118936699
gene name LOC106602963
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48260326 ~ 48262871 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933250.1
CATCCATCCAGGGATAGAGACGATGCTTAATAACGCCATACAATAGGCTACTACATATCAGGACCCTCTGCAGTCAGTTGTATGCCTTCTAATGATTTGAGCCGTGATGAAGTTCAGTGAGACACTCCTCCTTCTCAGCCTGTCTCTACTAAGCTGTGGCTCTCGCCGGGATCCAGAATGTTCCAGCGTGAGCTTGTGGGGGAAGATGGCTGACTTCACAGGGGAGTGCAGTTACTGGCAGCTGAGTCCGGACCTCTCCATCCCTGCCCTGGAGGAGCTCAGCGTGTGTGTTCACCTCCAGCGGCACATCAGCACACCAGCCTGGACAGCCTTCATGTACCGCCACCCTGACGGGCTGCAGGCTGAGCTGGGCCTGGCGGGTCAGGAGGGCCTGGTCCACACCTGGCTGTTTGGGATGAGGTGGTCagcccccctccacctccccctggGCCACTGGCACTACGTCTGTATAACCTGGTCTGGGGCTTCTCACCAGCCAGCCCTCTACGTCAATGGGACCAGTGTGGATGTTACAGCCCATGCTAACGAATCCCCCCTGTCCCCGTCCTGCTGCAGGCTGGCCCCGCACGGCACGCTCAGCCTGGGTGTCTCCCACTACTTCATCCAAGGGGAGATGCATGTGGAAAACGGTACCAACCTCAATGGGAGTGTTTCTCTGTTCCGCGTGTGGGGGCAGGCACGCACCCCTGAACAGGTGTCGGACCTGAGCTGCACAGAGGGGGATGAGGTGCGCTGGGATGCTGTTGACTGGCTTACCCTGAGCTGCCCTCCAGTCCCAGACTCCCATCTACAGTGTGGTGAGGCAGGAAACCATTAACATTTTATATACATTTTGATTGTCTATAAATGTATATTGAATGTCATTCTCTATGGAAAAACTGATTGGTGTTCGCTTTAATGAGCAGCCTTTTTTGTCATGTTTCCACGTCTCTGGCGGCCTCATCTCCTGTTCCTGTTACGTGACTGGAAAATATTGATCTTGTGAACCCATTTTAATGGCGCACACACAGGGTGCATAATTAAACTTGTTAAACATCAAAGCTTACTGCAGATGTTTTCATGTTGTTAGAGATGGTCCTTTAACATTGTAttaagtacactgaacaaaaatataaatgcaacatgtaaagtgttattcCCATGTTTCATGTGTAGAAATAGAAGATCctggaaatgttccatacacacaaaaagcttatttctctcaaatgtt

Function

NR:

description
PREDICTED: adhesion G-protein coupled receptor G4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933250.1 True 1234 mRNA 0.51 3 48260326 48262871

Neighbor

gene id symbol gene type direction distance location
LOC110533133 LOC106602963 coding downstream 4877 48247145 ~ 48255449 (-)
htatsf1 LOC100135780 coding downstream 26910 48225726 ~ 48233416 (-)
LOC110534147 LOC106602966 coding downstream 47252 48206906 ~ 48213074 (-)
f9b f9 coding downstream 96478 48158538 ~ 48163848 (-)
LOC110533132 LOC106603010 coding downstream 136798 48121001 ~ 48123528 (-)
fhl1b fhl1 coding upstream 440 48263311 ~ 48284060 (-)
LOC118936700 LOC106602960 coding upstream 67572 48330443 ~ 48333177 (-)
LOC110534153 LOC106602956 coding upstream 92170 48355041 ~ 48387060 (-)
LOC110533134 NA coding upstream 152646 48415517 ~ 48432744 (-)
LOC110534161 LOC106602951 coding upstream 240701 48501662 ~ 48508644 (-)
G897011 NA non-coding downstream 23912 48236099 ~ 48236414 (-)
G897008 NA non-coding downstream 35609 48224293 ~ 48224717 (-)
G897007 NA non-coding downstream 36115 48223794 ~ 48224211 (-)
G897005 NA non-coding downstream 38072 48221930 ~ 48222254 (-)
G896998 NA non-coding downstream 46331 48213789 ~ 48213995 (-)
G897044 NA non-coding upstream 59977 48322848 ~ 48323060 (-)
G897071 NA non-coding upstream 127600 48390471 ~ 48390695 (-)
G897091 NA non-coding upstream 148101 48410972 ~ 48413196 (-)
G897425 LOC106602952 non-coding upstream 235965 48498836 ~ 48501408 (-)
G896841 NA other downstream 271250 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1027280 47203241 ~ 47234608 (-)
G894917 NA other downstream 2341987 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2509995 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3244279 45011329 ~ 45017446 (-)
LOC110534172 LOC106602940 other upstream 618856 48881449 ~ 48907973 (-)
G899409 NA other upstream 1893321 50156192 ~ 50156902 (-)
G899421 NA other upstream 1919525 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2202596 50463950 ~ 50482534 (-)
G899727 NA other upstream 2458115 50720986 ~ 50721603 (-)

Expression


Co-expression Network