LOC110534150 (snx12)


Basic Information

Item Value
gene id LOC110534150
gene name snx12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48294185 ~ 48305120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933252.1
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgccGCGTTGAAATTTGCTGAACACATCAAATCAATAGGAGAGATCTAGCTGAGAATTGTTCCTCGCTATTGAGTTTTATAACGTGAACATCCTGCGGGTTGTCGGACAAGGAAGATGTCAGATCCCACGGTGGCTGATACTCGCCGGTTAAATTCAAAACCTCAGGACCTGACGGATGCTTATGGTCCCCCCAGCAATTTTCTTGAAATGGATGTTTATGACCCCCAAACTGTTGGAGTCGGGCGGAACCGTTTCACAACGTACGAAGTCCGTATGCGGACAAACCTGCCGATTTTTAAGTTGAAGGATTCTACTGTGCGAAGAAGATACAGTGACTTTGAGTGGCTGAAGAATGAGTTGGAGCGAGACAGTAAGATTGTAGTGCCTCCCTTGCCTGGGAAGGCACTGAAGAGACAGCTACCTTTCCGTGGGGATGAAGGCATTTTTGAAGATGCTTTCATTGAAGAGCGGCGTGTGGGTCTTGAGCAGTTCATCAACAGAATTGCAGGTCACCCTCTGGCCCAAAACGAGCGCTGTCTTCACATGTTTTTGCAGGACGAGAGCATCGACCGCAACTACGTTCCCGGAAAGATCCAGTAATCCAGAGGCAAGACGTGCCGAACGCAGACCAGGACTCGTCTGTTTTATCACCTCGGCCTGATTAAGCCTACCGCACCCTATCCCCGTCGTGGCCGCAACCACCTTTGACAGCTGCCTGCGTCACTCTCTAATGCCTTGTACTGTATACAAAAAGTATATTCTGCTAGTTGCCCCAGCAACAATGGTGCATGACCCTCTGCAGCACTGTATTGGGGCTGTTTACTCCAAGAACACTAAATGGGGGGTGTGACAGGGAAGTTGGTGCATTGTTGGAGATATATAAAAATACATGAGAAATAGTGTTATCCCATCTAAGTATTCAATCATAATGTCTCTGTCCCTTCATACCCACAGTAACCAACATTGTTCTTCCAATTGTATGTTTCCCATCTCTGATGGATGTCAGTAAATTATACCTTCCAAAGTTAATCAAAACAACTATTTTAAATGGGAGATTTACTTCCTGTAGCATGACATTCCATGTTTCTTTGCACGTCAACATGCTCTTCTTAGTGTGATTTTTgtattatgattttttttctttctgtaaCTTTGCCTTGAGCTCTGCATAAGTTGTCTTCAGTCTGCTTATGGAATGTCAGGTAACTGTCAGGTAATCAAACCACTGTGAAAACAAGGGGCTGATCAATAATCCACACATTTTTATTGATAAAGCTTTCGGCATGAAGTTTATTGACCCAAAGTATTCTTTCAATTGCTTTCTGTCATGTATTTTACCTTTTCATCATTCTGTACATTTAATCATGCAGCTTTCAGTTTTCATATAAACTGCCTTGTTTGTACTATCAATAAAATCTCTGCCTGCTGTGCCATGTCCAAAA
>XM_021618857.2
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgccGCGTTGAAATTTGCTGAACACATCAAATCAATAGGAGAGATCTAGCTGAGAATTGTTCCTCGCTATTGAGTTTTATAACGTGAACATCCTGCGGGTTGTCGGACAAGGAAGATGTCAGATCCCACGGTGGCTGATACTCGCCGGTTAAATTCAAAACCTCAGGACCTGACGGATGCTTATGGTCCCCCCAGCAATTTTCTTGAAATGGATGTTTATGACCCCCAAACTGTTGGAGTCGGGCGGAACCGTTTCACAACGTACGAAGTCCGTATGCGGACAAACCTGCCGATTTTTAAGTTGAAGGATTCTACTGTGCGAAGAAGATACAGTGACTTTGAGTGGCTGAAGAATGAGTTGGAGCGAGACAGTAAGATTGTAGTGCCTCCCTTGCCTGGGAAGGCACTGAAGAGACAGCTACCTTTCCGTGGGGATGAAGGCATTTTTGAAGATGCTTTCATTGAAGAGCGGCGTGTGGGTCTTGAGCAGTTCATCAACAGAATTGCAGGTCACCCTCTGGCCCAAAACGAGCGCTGTCTTCACATGTTTTTGCAGGACGAGAGCATCGACCGCAACTACGTTCCCGGAAAGGTATGAATGAAATCCAGTAATCCAGAGGCAAGACGTGCCGAACGCAGACCAGGACTCGTCTGTTTTATCACCTCGGCCTGATTAAGCCTACCGCACCCTATCCCCGTCGTGGCCGCAACCACCTTTGACAGCTGCCTGCGTCACTCTCTAATGCCTTGTACTGTATACAAAAAGTATATTCTGCTAGTTGCCCCAGCAACAATGGTGCATGACCCTCTGCAGCACTGTATTGGGGCTGTTTACTCCAAGAACACTAAATGGGGGGTGTGACAGGGAAGTTGGTGCATTGTTGGAGATATATAAAAATACATGAGAAATAGTGTTATCCCATCTAAGTATTCAATCATAATGTCTCTGTCCCTTCATACCCACAGTAACCAACATTGTTCTTCCAATTGTATGTTTCCCATCTCTGATGGATGTCAGTAAATTATACCTTCCAAAGTTAATCAAAACAACTATTTTAAATGGGAGATTTACTTCCTGTAGCATGACATTCCATGTTTCTTTGCACGTCAACATGCTCTTCTTAGTGTGATTTTTgtattatgattttttttctttctgtaaCTTTGCCTTGAGCTCTGCATAAGTTGTCTTCAGTCTGCTTATGGAATGTCAGGTAACTGTCAGGTAATCAAACCACTGTGAAAACAAGGGGCTGATCAATAATCCACACATTTTTATTGATAAAGCTTTCGGCATGAAGTTTATTGACCCAAAGTATTCTTTCAATTGCTTTCTGTCATGTATTTTACCTTTTCATCATTCTGTACATTTAATCATGCAGCTTTCAGTTTTCATATAAACTGCCTTGTTTGTACTATCAATAAAATCTCTGCCTGCTGTGCCATGTCCAAAA
>XM_021618858.2
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgccGCGTTGAAATTTGCTGAACACATCAAATCAATAGGAGAGATCTAGCTGAGAATTGTTCCTCGCTATTGAGTTTTATAACGTGAACATCCTGCGGGTTGTCGGACAAGGAAGATGTCAGATCCCACGGTGGCTGATACTCGCCGGTTAAATTCAAAACCTCAGGACCTGACGGATGCTTATGGTCCCCCCAGCAATTTTCTTGAAATGGATGTTTATGACCCCCAAACTGTTGGAGTCGGGCGGAACCGTTTCACAACGTACGAAGTCCGTATGCGGACAAACCTGCCGATTTTTAAGTTGAAGGATTCTACTGTGCGAAGAAGATACAGTGACTTTGAGTGGCTGAAGAATGAGTTGGAGCGAGACAGTAAGATTGTAGTGCCTCCCTTGCCTGGGAAGGCACTGAAGAGACAGCTACCTTTCCGTGGGGATGAAGGCATTTTTGAAGATGCTTTCATTGAAGAGCGGCGTGTGGGTCTTGAGCAGTTCATCAACAGAATTGCAGGTCACCCTCTGGCCCAAAACGAGCGCTGTCTTCACATGTTTTTGCAGGACGAGAGCATCGACCGCAACTACGTTCCCGGAAAGTAATGGAAAGACCATCTGATCATGTGACGCAATTGTTTGGACTCCAGATCCAGTAATCCAGAGGCAAGACGTGCCGAACGCAGACCAGGACTCGTCTGTTTTATCACCTCGGCCTGATTAAGCCTACCGCACCCTATCCCCGTCGTGGCCGCAACCACCTTTGACAGCTGCCTGCGTCACTCTCTAATGCCTTGTACTGTATACAAAAAGTATATTCTGCTAGTTGCCCCAGCAACAATGGTGCATGACCCTCTGCAGCACTGTATTGGGGCTGTTTACTCCAAGAACACTAAATGGGGGGTGTGACAGGGAAGTTGGTGCATTGTTGGAGATATATAAAAATACATGAGAAATAGTGTTATCCCATCTAAGTATTCAATCATAATGTCTCTGTCCCTTCATACCCACAGTAACCAACATTGTTCTTCCAATTGTATGTTTCCCATCTCTGATGGATGTCAGTAAATTATACCTTCCAAAGTTAATCAAAACAACTATTTTAAATGGGAGATTTACTTCCTGTAGCATGACATTCCATGTTTCTTTGCACGTCAACATGCTCTTCTTAGTGTGATTTTTgtattatgattttttttctttctgtaaCTTTGCCTTGAGCTCTGCATAAGTTGTCTTCAGTCTGCTTATGGAATGTCAGGTAACTGTCAGGTAATCAAACCACTGTGAAAACAAGGGGCTGATCAATAATCCACACATTTTTATTGATAAAGCTTTCGGCATGAAGTTTATTGACCCAAAGTATTCTTTCAATTGCTTTCTGTCATGTATTTTACCTTTTCATCATTCTGTACATTTAATCATGCAGCTTTCAGTTTTCATATAAACTGCCTTGTTTGTACTATCAATAAAATCTCTGCCTGCTGTGCCATGTCCAAAA
>XM_021618855.2
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttacgccGCGTTGAAATTTGCTGAACACATCAAATCAATAGGAGAGATCTAGCTGAGAATTGTTCCTCGCTATTGAGTTTTATAACGTGAACATCCTGCGGGTTGTCGGACAAGGAAGATGTCAGATCCCACGGTGGCTGATACTCGCCGGTTAAATTCAAAACCTCAGGACCTGACGGATGCTTATGGTCCCCCCAGCAATTTTCTTGAAATGGATGTTTATGACCCCCAAACTGTTGGAGTCGGGCGGAACCGTTTCACAACGTACGAAGTCCGTATGCGGACAAACCTGCCGATTTTTAAGTTGAAGGATTCTACTGTGCGAAGAAGATACAGTGACTTTGAGTGGCTGAAGAATGAGTTGGAGCGAGACAGTAAGATTGTAGTGCCTCCCTTGCCTGGGAAGGCACTGAAGAGACAGCTACCTTTCCGTGGGGATGAAGGCATTTTTGAAGATGCTTTCATTGAAGAGCGGCGTGTGGGTCTTGAGCAGTTCATCAACAGAATTGCAGGTCACCCTCTGGCCCAAAACGAGCGCTGTCTTCACATGTTTTTGCAGGACGAGAGCATCGACCGCAACTACGTTCCCGGAAAGGTATGAATGAATAATGGAAAGACCATCTGATCATGTGACGCAATTGTTTGGACTCCAGATCCAGTAATCCAGAGGCAAGACGTGCCGAACGCAGACCAGGACTCGTCTGTTTTATCACCTCGGCCTGATTAAGCCTACCGCACCCTATCCCCGTCGTGGCCGCAACCACCTTTGACAGCTGCCTGCGTCACTCTCTAATGCCTTGTACTGTATACAAAAAGTATATTCTGCTAGTTGCCCCAGCAACAATGGTGCATGACCCTCTGCAGCACTGTATTGGGGCTGTTTACTCCAAGAACACTAAATGGGGGGTGTGACAGGGAAGTTGGTGCATTGTTGGAGATATATAAAAATACATGAGAAATAGTGTTATCCCATCTAAGTATTCAATCATAATGTCTCTGTCCCTTCATACCCACAGTAACCAACATTGTTCTTCCAATTGTATGTTTCCCATCTCTGATGGATGTCAGTAAATTATACCTTCCAAAGTTAATCAAAACAACTATTTTAAATGGGAGATTTACTTCCTGTAGCATGACATTCCATGTTTCTTTGCACGTCAACATGCTCTTCTTAGTGTGATTTTTgtattatgattttttttctttctgtaaCTTTGCCTTGAGCTCTGCATAAGTTGTCTTCAGTCTGCTTATGGAATGTCAGGTAACTGTCAGGTAATCAAACCACTGTGAAAACAAGGGGCTGATCAATAATCCACACATTTTTATTGATAAAGCTTTCGGCATGAAGTTTATTGACCCAAAGTATTCTTTCAATTGCTTTCTGTCATGTATTTTACCTTTTCATCATTCTGTACATTTAATCATGCAGCTTTCAGTTTTCATATAAACTGCCTTGTTTGTACTATCAATAAAATCTCTGCCTGCTGTGCCATGTCCAAAA

Function

symbol description
snx12 Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in endocytic recycling and late endosome to Golgi transport. Predicted to be part of retromer complex. Predicted to be active in early endosome membrane. Orthologous to human SNX12 (sorting nexin 12).

NR:

description
sorting nexin-12-like isoform X1

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17918 SNX3_12; sorting nexin-3/12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933252.1 False 1526 mRNA 0.44 5 48294185 48305120
XM_021618857.2 False 1535 mRNA 0.44 6 48294187 48305120
XM_021618858.2 False 1571 mRNA 0.44 5 48294187 48305120
XM_021618855.2 True 1580 mRNA 0.44 6 48294189 48305120

Neighbor

gene id symbol gene type direction distance location
LOC110534146 zic3 coding upstream 88811 48201242 ~ 48205374 (+)
LOC110534145 fgf13 coding upstream 106665 48169002 ~ 48187520 (+)
LOC110534142 mcf2 coding upstream 135895 48143128 ~ 48158290 (+)
trnas-gcu-8 NA coding upstream 252052 48042052 ~ 48042133 (+)
rin1a LOC106602976 coding upstream 264609 48022058 ~ 48029576 (+)
LOC110534152 LOC106602957 coding downstream 2831 48307951 ~ 48321819 (+)
rab38c LOC106602959 coding downstream 28209 48333329 ~ 48336841 (+)
LOC110534154 LOC106602958 coding downstream 32389 48337509 ~ 48354802 (+)
LOC110534157 LOC106602954 coding downstream 90760 48395880 ~ 48413217 (+)
LOC110534160 LOC106602953 coding downstream 179068 48484188 ~ 48488509 (+)
G896226 LOC106602963 non-coding upstream 46097 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 73536 48220368 ~ 48220649 (+)
G896210 NA non-coding upstream 75778 48218050 ~ 48218407 (+)
G896146 f9 non-coding upstream 134011 48098136 ~ 48160174 (+)
LOC110534159 LOC106602952 non-coding downstream 196774 48490263 ~ 48503743 (+)
G897121 NA non-coding downstream 219406 48524526 ~ 48524766 (+)
G897165 atg4a non-coding downstream 233422 48538542 ~ 48539153 (+)
G897207 NA non-coding downstream 291231 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 361656 48666776 ~ 48668107 (+)
G896217 NA other upstream 58569 48235182 ~ 48235616 (+)
G896043 NA other upstream 383210 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1077114 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1089343 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1142636 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 371137 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 972582 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1125279 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1729870 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 4145098 52450218 ~ 52475365 (+)

Expression


Co-expression Network