LOC110534152 (LOC106602957)


Basic Information

Item Value
gene id LOC110534152
gene name LOC106602957
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48307951 ~ 48321819 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933253.1
CCCCCCTTCTATTAATCCGGTTGACAAAGCTACAGCGGATATAGTGAAAAGCCCTTGGAGCTAGCTCAGTTGCTGGAGTGAAAGATTTTGAAAGGGGAATGACATGCACAACACAACGGGCTTGAAAGGGCATAATGACTGCACACCTCTCCTGGATTTGTAGTAGAATTTCTCTGAATTTTGCTTTTAAAAAACTATGTAAAGATCAGTGTGGGTCTATCTCAATCATTTTCAAAAAAGCTTCCTCTCCCTGTTGCATTTCCTTCATTTGCACCGACGCGAAAGAAGTCGAGAAATTAAAGCGTAATTGCGTTTCGCCTCGTATGTTTTAAGATCAGTGCAATTGGTAGAGTGGAGGCGAATCGAGGAAGACACTGTAGTACATTGGAGATGCACCCTGGAATACATGAATGGTTTGCGCCACCCGACATAGGCGAGGGTTGTTTATACTACGAATATCCACGTCACTGTGTCCGCCCTGTTAACCAAAAAAACCGACACACAAGAACTAAGGAACGCGGGGTTGTTTCATCAGCGAACGTGAAGTCAACTGTTTTGGTCGTGTTGTCGAGCCTTCGAACATTCCAAAGTAAACCCAAAGGATCTCTCCCGCTCCGTCTCAACTCTTCGCCGCTCTGCTCAGTCAACCCCTTCAGCTTCGCAGCTCCCTCCGCAGACGCGACCATGGTAGACCAGATGGCCTCCTTTGGGCGGATCTTGTTGCGACGCAGGGTACTGGACTGTTCCGATGAGGGAAGCCGATTCGCCCGCTGCCTCTCCACACTGGACCTGGTGGCCCTGGGGGTGGGCTCTACGCTAGGGGCAGGGGTGTACGTCCTAGCTGGTGAGGTAGCCAGGGAGAAGGCTGGTCCTGCCATCGTGCTCTGCTTCCTCATCGCTGCGCTCTCCTCCATGCTGGCCGGACTCTGTTACGCTGAGTTTGGCGCCCGCGTACCCAAGACTGGTTCGGCGTACCTGTACAGCTACGTGACGGTTGGCGAGATCTGGGCTTTTATCACGGGGTGGAACCTCATCCTCTCCTATGTCCTCGGTACAGCCAGTGTGGCCCGAGCCTGGAGCTCTAATTTTGATAGCCTGGTGGAGCAAAGGATATCAGACTTCTTCAGGTCATCCATGGCCATGAGCGCCCCGGGTGGGGTGTTGGCTGAATACCCGGACCTGTTTGCGCTCATCCTCGTGCTCTTATTAACCGGGCTGCTGGCGTTTGGCGTGAGTGAGTCGGCTCTGGTGAATAAGATCTTCACAGGGGTCAACCTGGTGGTGCTGGGCTTCGTCATCATCTCAGGCTTTGTGAAGGGAGACACAGTTAACTGGAACCTTACTTTGGAGGACTTTAACAACGCCAGTAACACCAACGTGTCCAGCTTATCCAAAGAGGTTGTGGATAAGACGTTTGGCACTGGTGGTTTTGCTCCTTTTGGCCTCCGTGGCATTCTGTCTGGTGCTGCCACGTGTTTCTATGCCTTTGTGGGGTTTGACTGCATCGCCACTACAAgcgaAGAGGCTAAGAACCCAACTCGCTCCATCCCTGTGGGCATCGTGGCCTCTCTGCTCATCTGTTTCTTCGCCTACTTCGGGGTGTCTGCGGCCCTCACACTCATGATGCCCTACTACCTGCTGGACACCAAGAGCCCTCTGCCAAAGGCCTTCATCCACGTAGGCTGGCCTGCTGCTCACTACATCGTGGCTGTGGGCTCCCTCTGTGCTCTCTCCACCAGCCTGCTTGGGTCCATGTTCCCCATGCCGAGGGTTATCTACGCCATGGCAGAGGATGGGCTCCTGTTCCGGGGCCTGTCCCGCATGAACACGCGTACCAAGACGCCCCTGATGGCCACCATCGTCTCTGGCTGTGTGGCATctctgaTGGCCTTCCTCTTTGACCTGGCTGCCCTGGTTGACCTCATGTCCATAGGAACACTGCTGGCCTACTCACTAGTGGCCATCTGTGTGCTCATCCTCAGGTACCAGCCGGGCACCCTGAGCTCGTCCAGTCAGAGTGAGAAGCTGGTGGAGCTGGTGGGAGGGGAGAAGGTGGCCGTGTCCGGGCGAGACAGCGGTGACGAGGACGGCCTGGATCTGGAGGACCGACCCCTCCGGGAGAAGTTCACCCCCCGCCGCCTCCTCTTCCCCAGCGGGAATCTACCCACTAAGATCTCTGGGAACATCGTCTATGCCACCACGGCCGTTATCTCGGTGCTCATCACTGTGCTGTGTGTGGTGTTGGCGGGGAAGCTGGATGAGTTGATCGAGGTTCAGCCTGTGTGGGTCACGGTGTGTGTAGTACTGGCCTTGCTCTGTGCCCTTTGTGTCGTCATCATCTGGAGGCAGCCCGAGAGCAAGGAGGCTCTCACCTTCAAGgtgccCTTGTTGCCTTGGCTGCCTCTGTTCAGTGTCTTTGTCAACATCTACCTCATGATGCAGCTGGACCTGGCTACGTGGTGCCGCTTTGCTGTTTGGATGGGCATTGgATTTGCAATCTACTTCTGCTACGGGATCTGGCACAGCAGCGAGGCAGTCAACAGCACCCCCCGGAAATACGAGCCTGCCCTCCAGACCAAGAAGAAGCCCATCTACCTGGGGAGAGACGAGAGTGAGGCGGAGGGGTTGAGCACCTGAACGGCTAGGGGCTGGAGGAAACCCCACACGTTATACCACTGAAAGGAAGGCAGACAATTCAACTGACACTGCAATGTGTGTCTCTAGATTGGTTACCTTTCATTTTTGGGAGATCTGTCTTACACTTTATTGGACAGTTGATGAGTAATACTTTCAACACTTAAAGTTGCTATTAACATTACtagtgatttttttatttatttattaaccgTTAGTCTCTTGCTAGTTGGTGGCCGTGCCTCCAATCGTTAGCCCCCCCGGGGCCTCCAGCAGCAATATGCTGTACAGGATCTGTTGGTTAGGGCCATATGTATTACTGGGTACCAGTGCGTCTGTGGGGTTTACAGTCTTGGTCAGGGCCTCCGTAGACTTGTTAACCGTGCCGAGGCCCGATGTGGGCGTTTTGTTTTTGGGATGACTGTCGTAGACGAGCTGTCCTCCACCTGCCAAAGAGCAACCGATTTAACAGTAGTACCTTGTGCACCTAGTTGCAGAAATGAGAATTTTTGTTGGTGGTGTCAGCTTCTTCAGTAAGCTGCATGAGATGGAAATATCACCACGGAGACCTCAAACTACATATCCTATAATGTTAAAGGCGTTTATGAACAATCTGTTGCCGGTGATTCTTTCTGTCGTACATTTTGTCTTCGAACGTATGGTAAAAATAGTCAAAGTAATGATGTATGTTATCATTTTCATGGTGATGGAAGTCCCTGTGTTACTTGCCTCTGAGGTCCATCCAAAGAATTGACTGAGGTAAAATCAACCTTTTGGAGGGTGATAACGCATCCCAGCACCTCTGCACTGTCTGCTGAATAATCTTTCATTTCGGTATCATCATTGGGGCTGTTCTGTACTCTTGTAAAACCCCTTTTATATGCATTTCTATTTATCTCTGGCGTTTTGATTTACAAATTCGAGCTACCCTTTTTATATGTAAATACTTGAGTTTGAGATCTCTGCCTCGATTGCTTGAGCTGTCTACAGACGTAGATTTAACTGTCAAACAAAGAAATGACCCGCGTGATCTAGACGATGCGCTGTATTGagtcttttttttaaaggcagtgaTTTTAGTCCTGGTCAGCTATTACCACTAATATTACTTTAGTTGTAGCTTCTTGTGAACCTATTTTCACAAACATTTTTAGTTTCCATTGAAACTTGTTCTTGGCAGCTTGGCTGTCGAGTTTGCATCATTTTAGTCATCTATTTTCCTGCTCTGCCCTTCAACTGACTTTAATCGAGTAATGTGCTTTTTATAGATGTTTTGTGTTCTTTACATGTACTCTTGATTACCCCCTTGCTTTTAATGTGTTACTGTATATAGCAAAACTTGCTTCACCAAATAATTGACAGGTCTACTCGTGAATCTATTTGTTAATAGTCACTAGTTGTGGTGCTGCTTGACCAAATTACATTTTGCTTTGGAGACACTGGTTCAAGAACATGAGTATGACCAGCAAAAACTGGTCTCTAAATTTGAACTTTATTTGCTCATCTCCAAAGACCCTGGAGATGGCGAGGATAATTGATAGATATGGTATTGTAGTACAGTAATAACTGTAGATAATAACTGTagatgtacagtgtgtatagctGTATTTTTATTAGTAGAATGCTGTATATTATACAAATGGATATGTTTTATAGTTGTGCTTCTTGGCATTACTTTTAACATCGTTTCTTGAGGGTTTGTTAGACATCTCCAAAAGAAACCGTTTCCTAAAAATGCCTACCACCTCAAAGATCCCACTGGCTGGTAAACCAAGACACAGGTTTTATCTTCGGTtttatatactgtaaatacactgcatgaccaaaagtatgtggacacctgctcgtcaatcATCTCagtccaaaatcatgggcattaatatggagttggtctccccccccccccccctgctgacataacagcctctactcttctgggaagggttTCCACCAGATGTTAGAACATAGCTGTGGGGatttgcttctattcagccatgagcattagtgagatcAGGCACTGACGTTTGGCAATTAGGCCttgctcgcagttggcgttccaattcatcccaaaggtgttcgatggagtttaGGGCAGGTctctttgcaggccagtcaagttcttccacaccgatctcgacaaaccatttctgtatggaactcgctttgtgcacgggtgcattgtcatgctgaaacaggaaagggccttccccagacTGTTGCcacagttggaagcacagaaccgtctagaatgtcattgtattctgtagcattaaggtttcccttcactggaactaaggggcctagcccaaaccagaAAAAATGCCcccgaccattattcctcctccaccaaactttacagttggctctATGCATTCAGGTAGccttattgtgctgacgttgctttcagaggcagtttgtaacCCTGTAGTGAGTGCAATCGAGAGCAGACTATTTTTACGGGCTTCAGCACTCACCGGTCCCGTTCTGTAAGCTTTTgttgcctaccacttcacggctgaggcGTTCCtgtagatgtttccacttcacaataacaacacttacagttgacccgggCAGCTCTaatggcagaaatttgacgaactgacttgttggacaggtggcatcctatgaaggtgccacgttgaaagtcactgagctcttcagtaaggccattctactgccaatcttTTGTCtgtagagattgcatggctgtgtgcttgatgtTATATGCCTGTCAGCAACGGGAGTGGCTATAATAGACAAAGCCACTatttttgaaggggtgtccacatacttttgtgtaatTGCCTGTATAAATGAGCTGTATTTTCATTGTTCTTTTCTAAATAAAATGGTTAATTATCAA

Function

NR:

description
cationic amino acid transporter 3-like

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13865 SLC7A3, ATRC3; solute carrier family 7 (cationic amino acid transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933253.1 True 5500 mRNA 0.48 12 48307951 48321819

Neighbor

gene id symbol gene type direction distance location
LOC110534150 snx12 coding upstream 2831 48294185 ~ 48305120 (+)
LOC110534146 zic3 coding upstream 102577 48201242 ~ 48205374 (+)
LOC110534145 fgf13 coding upstream 120431 48169002 ~ 48187520 (+)
LOC110534142 mcf2 coding upstream 149661 48143128 ~ 48158290 (+)
trnas-gcu-8 NA coding upstream 265818 48042052 ~ 48042133 (+)
rab38c LOC106602959 coding downstream 11510 48333329 ~ 48336841 (+)
LOC110534154 LOC106602958 coding downstream 15690 48337509 ~ 48354802 (+)
LOC110534157 LOC106602954 coding downstream 74061 48395880 ~ 48413217 (+)
LOC110534160 LOC106602953 coding downstream 162369 48484188 ~ 48488509 (+)
LOC110534159 LOC106602952 coding downstream 168444 48490263 ~ 48503743 (+)
G896226 LOC106602963 non-coding upstream 59863 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 87302 48220368 ~ 48220649 (+)
G896210 NA non-coding upstream 89544 48218050 ~ 48218407 (+)
G896155 fam89b non-coding upstream 200970 48104479 ~ 48106981 (+)
G897121 NA non-coding downstream 202707 48524526 ~ 48524766 (+)
G897165 atg4a non-coding downstream 216723 48538542 ~ 48539153 (+)
G897207 NA non-coding downstream 274532 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 344957 48666776 ~ 48668107 (+)
G896217 NA other upstream 72335 48235182 ~ 48235616 (+)
G896043 NA other upstream 396976 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1090880 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1103109 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1156402 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 354438 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 955883 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1108580 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1713171 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 4128399 52450218 ~ 52475365 (+)

Expression


Co-expression Network