LOC118936700 (LOC106602960)


Basic Information

Item Value
gene id LOC118936700
gene name LOC106602960
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48330443 ~ 48333177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933254.1
TGTGATGCTGTTGTTACTGCCATTTCATCAGCGGATTTTCAAAAAATATCTCTCCATCTTTAAACATGGAATTACCATAAAATGAAACCATCGACAAGTTTTAAGGACGGCCATTAGCCTATTTCACATGAAACTCGCCAGTATAGTAACAAATCTCAGTGTAGAATTAAATAAAATGATAGCCTAGGACAAGGCCTATTTGCTGATTACTCCTTGGTGTAAAACACGGTGTTTGACTAGGCCTCCTGGGATCACTGTTTCAGAGAGCATCTTCGAGAGAAAATATTTCTCAAGATCATGGGGTTTGCTATTGCCAGGCGTTGATCGCCCATCCAACAAGATTCTGTGAGATATGGAAGCGATATGGCTGTACCAGTTTCGACTCATCGTCATTGGGGACTCGACAGTAGGAAAGTCGTGCCTGATCCGGCGATTCACCGAGGGACGCTTTGCGCAGGTGTCCGACCCCACAGTCGGTGTAGACTTCTTCTCAAGGCTAGTGGAGATAGAGCCAGGGAAACGCATTAAACTTCAAATCTGGGACACTGCTGGACAAGAGCGATTCAGGTCTATTACCAGGGCGTACTACCGCAACTCTGTTGGTGGGCTACTGCTGTTTGACATCACCAACCGTCGCTCCTTCCAGAATGTGCATGAGTGGCTGGAGGAGGCCCGCAGTCATGTCCAACCTCACAGTATCGTCTTCCTGTTGGTGGGTCACAAGTGTGACCTGGAGTCCCAGAGGCAGGTGAGCCAGCAGGAGGCTGAGAAGCTGGCAGGTGCCTATGGCATGCGCTATGTGGAGACATCGGCTCGCGACGCCATCAACGTGGAAAAGGCCTTCACTGAGCTAACGCAGGACATCTTTGAGCTTGTGAAGAGCGGTGACATCAACATCCAGGAGGGTTGGGAGGGGGTGAAGAGTGGCTTTGTGCCCAATGTGGTGCACTCCTCAGAAGAGGTCACCAAGAGTGACCGCCGGTGCCTCTGCTGAATGTCCTGTCTGTCTAGTTggctttacccccccccccccctcgctcagCCCATGTATTCCTGTAACATTATGACCCATTAGCTCCCTATCTTATCACCTGGCATTTATTTGGCTCTCTCACTCCTATCCTGAATACTGGAAGGCCATATCAGCTCTAGTCTACCACTGGAGCAAAAATGGACAAAGCGATTTGGGTCGTTCCATGAAAAGAGTGCCTTTTGTGTCCCTtggatattttaagtagaaattgtgcaccaatattgaatttgaaTAGCTTgttgcattttgacatgtccttCTCCCAACATTTCTCAAAGTaacatttttttgttgctttgccAAAgttatttctgaagattattattcatttcatgtgattagtgttTATGTccgtccctcattttaaggtcaactgAACTcccgttttaatatggtgaagcTAT

Function

NR:

description
ras-related protein Rab-39B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07925 RAB39B; Ras-related protein Rab-39B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933254.1 True 1437 mRNA 0.47 3 48330443 48333177

Neighbor

gene id symbol gene type direction distance location
fhl1b fhl1 coding downstream 46383 48263311 ~ 48284060 (-)
LOC118936699 LOC106602963 coding downstream 67572 48260326 ~ 48262871 (-)
LOC110533133 LOC106602963 coding downstream 74994 48247145 ~ 48255449 (-)
htatsf1 LOC100135780 coding downstream 97027 48225726 ~ 48233416 (-)
LOC110534147 LOC106602966 coding downstream 117369 48206906 ~ 48213074 (-)
LOC110534153 LOC106602956 coding upstream 21864 48355041 ~ 48387060 (-)
LOC110533134 NA coding upstream 82340 48415517 ~ 48432744 (-)
LOC110534161 LOC106602951 coding upstream 170395 48501662 ~ 48508644 (-)
LOC110534163 atg4a coding upstream 203236 48536413 ~ 48544938 (-)
alg13 LOC106602945 coding upstream 292825 48626002 ~ 48634602 (-)
G897044 NA non-coding downstream 7383 48322848 ~ 48323060 (-)
G897011 NA non-coding downstream 94029 48236099 ~ 48236414 (-)
G897008 NA non-coding downstream 105726 48224293 ~ 48224717 (-)
G897007 NA non-coding downstream 106232 48223794 ~ 48224211 (-)
G897005 NA non-coding downstream 108189 48221930 ~ 48222254 (-)
G897071 NA non-coding upstream 57294 48390471 ~ 48390695 (-)
G897091 NA non-coding upstream 77795 48410972 ~ 48413196 (-)
G897425 LOC106602952 non-coding upstream 165659 48498836 ~ 48501408 (-)
G897432 NA non-coding upstream 192090 48525267 ~ 48554785 (-)
G896841 NA other downstream 341367 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1097397 47203241 ~ 47234608 (-)
G894917 NA other downstream 2412104 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2580112 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3314396 45011329 ~ 45017446 (-)
LOC110534172 LOC106602940 other upstream 548550 48881449 ~ 48907973 (-)
G899409 NA other upstream 1823015 50156192 ~ 50156902 (-)
G899421 NA other upstream 1849219 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2132290 50463950 ~ 50482534 (-)
G899727 NA other upstream 2387809 50720986 ~ 50721603 (-)

Expression


Co-expression Network