LOC110534153 (LOC106602956)


Basic Information

Item Value
gene id LOC110534153
gene name LOC106602956
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48355041 ~ 48387060 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618860.2
TTTGCTTCCCTCTCATGTTCTCATTCGATGGTGCAACTACATAACAAGCTGTATTAGAGAGAATGTCAGCGAGGTTTGAGGGCTGAAATTCAAGCAAAACATCAAGCAACATCATGAGGAGCCGTAGTAACTCTGGGGTGAAACTCGACAATTATGCACGGATGGTTACGAAAACAATACTACGTCACCAGGATCCGGTGACGGGGCTTCTCCCAGGGGACCCGGAGAACCACCATGCCTGGGTCCGGGACAATGTTTACGGCATCCTGTCTGTGTGGGCCCTCAGCCTGGCCTACCGCAAGAATGCTGACCGAGATGAGGACAAGGCGAAGGCCTACGAGCTGGAACAGAATGTCGTTAAACTCATGAGGAGCCTGCTGCAGTGTATGATGAGGCAGATTGACAAAGTGGAGAAGTTTAAATACAGCAAGAACAAATCTGACTGCCTGCACGCCAAGTATGATTCCCAGACAACTGCCACGGTGGTGGGAGACAATGAGTGGGGTCACCTGCAGGTGGATGCCACCTCCATATTCCTGCTCTTCCTGGCCCAGATGACTGCATCAGGCCTTCACATCGTCTACACTCGGGATGAGGTGGACATCATCCAGAATCTGATGTTCTACATCGAGGCTGCGTATAAAGTGGCAGATTTTGGCATGTGGGAACGTGGGGACAAGACAAACCAGGGGATTCCGGAGATCAACGTCAGCTCAATCGGCATGGCGAAAGCTGCACTTGAGGCCCTGGATGGCCTCAATCTGTTTGGCGCCAAGGGGGGTCATGAATCGGTAGTCCATGCGTTAGCTGACGATATTCAGCGCTGCACGTCTATCCTTAGTTCCATGTTGCCAAGAGCTTCCACATCCAAAGAGGTGGATGCTGGGGTTCTGTCCATTATCTCGTACCCAGCGTTTGCTGTGGAAGACATTGACATCGTTAATATGACCAAGGAGGAAATCATTTCCAAGTTGCAGGGGAGATATGGATGCTGCAGGTTCCTCAGAGATGGACACAAAACCCCCAAAGAGGACCCCAGTCGCATATATTATGAGTCATCTGAGCTGAAGCTCTTTGAGAATATTGAATGTGAGTGGCCACTTTTCTGGACTTACCTCATTCTGGATGGGATCTTCATCAACAGCCCTGAGCAGGTGCAAGAATACAGAGATGCCCTGGAGGCTATTATGATCAAACAGAAGGATGGCCTTAGCCTGGTGCCTGAGCTCTATAGTGTCCCTGCAGACAAGGTAGACGAGGAGTATGAGAATCCCCATTCTGTAGAGAGAGTTCCCATGGGCAAGTTGCCTCTGATGTGGGGACAGTCTCTGTACATACTGGGAAACCTGATGGCTGATGGTTTTTTAGCCCCAGGAGAGATTGATCCTCTGAACAGACGGTTTTCCACTGTATCCAAACCTGATGTTGTGGTTCAAGTGTCCATCTTAGCTGAGACGGACCACATCAAACATCTGTTGATGAAACAAGGGATAGATGCTGATACCTTGGAGGACATCCATCCTATCAGAGTCCAACCCTCCAGGGTGTTGAGCCACATCTATGCAAGGCTAGGTCGCAACCAGAGACTAGGCCTCACTGGGAGACCGTACAGACGCATTGGCACTCTGGGGACATCAAAATTCTACATCATCCGTGACACTGTCTTCTCCTTCACCCCTCAGTTCATTGATCATCAGGAATTCTACTTGGCGTTGGACAACCACATGATATTGGAGATGCTGCGCAATGACCTTTCCTACCTGGCTTCCCGCTGGAGAATTACCGGCTGTCCCACGGTCTCCTTCCCCATCTCATCCAATATGCTCACTGATGACCACAAAGCGCTGGACCCTGCAGTACTAGCCGTTCTGAGAAAACTGCAGGATGGTTACTACGGCGGAGCAAGGGTTCAGACAGGGAAACTGTCCAAGTTCATGAATACTTCCTGTTGCTCTCAACTGTCCTTCATGGACGATGAGGTGGATGACCTGGCTCAGTATCTGGACCAGTTACTGTCCATACCGAAACACAGCGAAAAGATCAGCTCCCATAAAGGCGGTCTGAACCGCTTCCGGGCGTTGGCCAGAAAGACCTGTGAGATGGTCTCACTGGTGCACAAAGCACGGGAGCTCGACATCCACAATGTGCACATGTACCTCCCAACCAAACTGTTTCGCTCCCGTCAGCCAAGCCTTCACCTGGTGGATGTAGATGGCAGGggCTCCAATGCCACACCTCCAGCCCAGATGAATTTGCCCAGGGACACGACTGGAGCTATAGACTACCAGGCCCTGGTGCAGGTGCTGAAGCAGACCCAGAACCTTCAGGATCAGGCCGACATCCTCTACATTTTCTTCAAAGACAAgggtatggactgggacactaagCTGCACGGTAAAGGCTCCACTGTTAGACGACTGCTGAGCAGTCTGTACGACAAGGCTGGGAACCTGAAACACTGGGGCCTCGTCCGCATGATCTCTGGCATGCTCCGGAAGAAAGTGGAGGAGCTGGATGAGGCCTGTTCAGATCTGCTGGCCCACCAGAAGCACCTGACAGTGGGTCTCCCCCCTGAGCCAAGGGAGAAGACCATTTCAGCCCCCATGCCCCCTGACAAGCTGGCAAAGCTAATTGATGTGGCCAGTGAAAATAATCTAACCATTGCCATTCTCACTCAGGAGATTATGGTGTTCCTGGCAATGTGTATCCGCACCCAGCCAAAACTCTTCAGTGAGATGTTCCGTCTCAGGATCGGACTGATCATCCAGGTCATGGCTACTGAGCTGGCCCAGTCCCTCAACTGCTCTGGCGAGGAGGCCACGGAGTGCCTGATGAACATGAGCCCTTCAGAGCTAAAGAACCTCCTGCACCACATTCTCAGTGGGAAAGAGTTTGGGCTGATGAAGAGTGTGCGTTCGGGTGCAACAGGTACAGACTCCATTGCCATCCAGGATATTTCGCCTAACTCTAAGAGTGTGGGCGGGAGCAAACATCAGAGTAAAGTGAGGAAGCTGTCCTTATCCGTGCATTCCCTTGACATCGAGAACATTGAATCAGGGCGGTACAGACTCCCATCCATCGAGTCGTTGCAGAGCGCTACAGAAAAGTTGGCGGTGAGAGACAGCCGCCATGGCCAGTGGTTACGTAGGAGACGTCTAGACGGAGCCCTCAACAGAGTCCCTGTTGGCTTCTACCAGAAGGTCTGGTCCATCCTCCAGAAGTGTGACGGTCTATCTATTGTGGGGTGCATTCTCCCAGCGTCAACCACAAGAGAGATGACCCCCGGTGAGATCAAGTTTGCAGTGCACGTGGAGACGGTGCTGAATCGCGTGCCCCAGCCAGAGTACCGCCAGCTGCTGGTGGAGGCCATACTGGTGCTCACCCTGTTGGCCGAGGTGGAGCTGGAGAGCATCGGCAGTGTCGTCCATGTAGATAAGATAGTCCACATGGCCAGTGAAATGTTCTACCACGACCAGAAAGTGCTGGGGGCTGACGACACCCTTCTGGAGAAAGATCACTCCAATGGGATCTGCAGGCTGCTGTATGACAGCGCCCCTAGTGGCCGCTACGGCACTATGACCTACCTCTGCAAAGCTGTGTGCACCTACGCCCAGGACTTCTTGCCAAGCGGTGCATGTGCCATCCAATGAGCTTCTATTAGTCTGTGCCCTCCAATTAGCTAACAGCAACACATACTGTAGTAGGGCTCAGAACCTGATTTTTATCTAGTCACCCAACCTTTATCATGGAGTTTAATTTGTTTTGATATATCCCAGCAAGCCTGTGCCTGACATGAACAATCACTGTGAGGGGTCCCAGTATTTTAAATACGAACTTCCTCTGATATGGCAGATTCTCAGAAAAATGAATGAAGCTAGGTTTCCAGACTTGTTATTCACAGCAGGTAGATATTTCTTACCATAAAGATGGTGCACTGTGATTCTATGTCAGAGTGAGCGGTTGTCACAACACTAGTGGTAGTGCTGCTTTTGAAAATGATAATTTTCCTATTGTGATGTGACAGGTGTACTGTATGGATCTTTGATTAATACAGTATAGTGGCAATCTTCATCTT

Function

NR:

description
phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like

GO: NA

KEGG:

id description
K07190 PHKA_B; phosphorylase kinase alpha/beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618860.2 True 4075 mRNA 0.51 32 48355041 48387060

Neighbor

gene id symbol gene type direction distance location
LOC118936700 LOC106602960 coding downstream 21864 48330443 ~ 48333177 (-)
fhl1b fhl1 coding downstream 70981 48263311 ~ 48284060 (-)
LOC118936699 LOC106602963 coding downstream 92170 48260326 ~ 48262871 (-)
LOC110533133 LOC106602963 coding downstream 99592 48247145 ~ 48255449 (-)
htatsf1 LOC100135780 coding downstream 121625 48225726 ~ 48233416 (-)
LOC110533134 NA coding upstream 28457 48415517 ~ 48432744 (-)
LOC110534161 LOC106602951 coding upstream 116512 48501662 ~ 48508644 (-)
LOC110534163 atg4a coding upstream 149353 48536413 ~ 48544938 (-)
alg13 LOC106602945 coding upstream 238942 48626002 ~ 48634602 (-)
dacha dach2 coding upstream 279646 48666706 ~ 48795320 (-)
G897044 NA non-coding downstream 31981 48322848 ~ 48323060 (-)
G897011 NA non-coding downstream 118627 48236099 ~ 48236414 (-)
G897008 NA non-coding downstream 130324 48224293 ~ 48224717 (-)
G897007 NA non-coding downstream 130830 48223794 ~ 48224211 (-)
G897005 NA non-coding downstream 132787 48221930 ~ 48222254 (-)
G897071 NA non-coding upstream 3411 48390471 ~ 48390695 (-)
G897091 NA non-coding upstream 23912 48410972 ~ 48413196 (-)
G897425 LOC106602952 non-coding upstream 111776 48498836 ~ 48501408 (-)
G897432 NA non-coding upstream 138207 48525267 ~ 48554785 (-)
G896841 NA other downstream 365965 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1121995 47203241 ~ 47234608 (-)
G894917 NA other downstream 2436702 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2604710 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3338994 45011329 ~ 45017446 (-)
LOC110534172 LOC106602940 other upstream 494667 48881449 ~ 48907973 (-)
G899409 NA other upstream 1769132 50156192 ~ 50156902 (-)
G899421 NA other upstream 1795336 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 2078407 50463950 ~ 50482534 (-)
G899727 NA other upstream 2333926 50720986 ~ 50721603 (-)

Expression


Co-expression Network