LOC110534157 (LOC106602954)


Basic Information

Item Value
gene id LOC110534157
gene name LOC106602954
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48395880 ~ 48413217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618863.2
AATCCTTAGGGAAATAAAGGAATAATCCATCAACGATAAACTGATCAGTATTAGCATCTGGGATCCGCTCTCAATGTCTGTTGTGGCAGGAAGTTGTTGGAATTCGGTTAAAATCCGATAGGATAACAACAGCGGAGTTATCTGTCGAAATCCATCAAACGAAGATTCTCGATGGATAACACCGGATATTGCAACGAGAGCAGCACAAGTGACGAGGACATGGTGGAGATAGCAGGGGCGACGTTAGACTTCTCTAATACAGAGGATGTACCACCCTTGGACCGAGACAAATGTTGTGGGGATAACCCAGGTATGGAGGAGGTGAACGGGGTGCCTAAACTGATGGACTTGCTGGATGATCCGGTGCCAGGGGTGGGCACCTATGAGGACTTTAACACCATAGACTGGGTGCGGGAGAAGTCCAAAGACCGCGACCGCCACAGAGAGATTACCAGTAAAAGCAAAGAGTCCACATGGGCGCTGGTGAAGAGTGTCAGTGATGCCTTCTCTGGATGGCTGCTCATGCTGCTGATCGGACTCATGTCAGGTGCTTTGGCAGGTGGGATCGACATATCAGCCCACTGGATGACAGACCTCAAGGAAGGGGTTTGTCTGAACGGGTTCTGGTTCAACCATGAGCACTGCTGTTGGACCTCCAACGAGACCACGTTCCAGGAGAGGGACAAGTGTCCCCAGTGGAAAAGCTGGGCCGAGCTCATCATTGGCACGACAGAGGGTCCCTTTGCGTACATTACGAACTACCTAATGTACGTGTGCTGGGCTCTACTATTCGCCTTCCTGGCTGTGACACTGGTCAGGGCCTTCGCCCCCTATGCCTGTGGCTCTGGAATCCCAGAGATCAAAACCATATTGAGTGGGTTCATCATCCGAGGGTACCTGGGGAAGTGGACCCTGATCATCAAGACCATCACCCTGGTCCTGGCTGTGTCGTCGGGGCTCAGCCTGGGGAAGGAGGGGCCCCTGGTCCACGTGGCCTGCTGCTGTGGCAACATCCTATGCCACCTGTTCACCAAGTACCGTAAGAACGAGGCCAAGCGCAGAGAGGTTCTGTCTGCTGCTGCTGCCGTTGGTGTGTCTGTGGCTTTCGGTGCCCCCATAGGAGGAGTGCTCTTCAGTCTGGAAGAGGTGAGCTACTACTTCCCTCTGAAGACCCTGTGGCGGTCGTTCTTCGCGGCCCTGGTGGCAGCCTTCACCCTGCGCTCCATCAACCCGTTTGGCAACAGCCGCCTGGTGCTGTTCTACGTGGAGTTCCACACCCCCTGGCACCTCCTGGAGCTCGTACCCTTCGTCCTCCTTGGCATCTTCGGCGGCATCTGGGGTGCCTTCTTCATCCGAGCTAACATCGCGTGGTGCCGGCGGCGTAAGACCACGTGGCTGGGCCACTACCCGGTCCTGGAGGTGCTGGTTGTCACCGCGATCACGGCGGTGGTGGCTTTCCCTAACAGCTACACCCGCACCAGCACCAGCGAGCTCATCTCTGAGCTCTTCAATGACTGTGGCCTGCTGGACTCCTCCAAGCTGTGTAACTATGACAACGCCAACGTCACCAAGAGCAGCAACGAGCTGCCAGACCGTCCTGCTGGAGATGACGTCTACACGGCCATGTGGCAGCTGTCCCTGGCCCTTGTCTTTAAGATGCTCATCACCGTGGTTACCTTCGGCATGAAGGTTCCTTCCGGGCTGTTCATTCCTAGTATGGCGGTGGGGGCGATTGCAGGCAGGCTGCTGGGTATAGGCATGGAGCAGCTGGCCTACTACCACCATGACTGGGCGATCTTCAGGGGCTGGTGTTCTCCTGGTGCTGACTGTATCACCCCAGGCCTCTACGCCATGGTGGGGGCTGCTGCTTGCTTAGGTGGGGTGACCCGCATGACCGTATCCCTGGTGGTCATCATGTTCGAGCTGACCGGAGGGCTGGAGTACATCGTGCCCCTGATGGCCGCGGCCATGACCAGCAAGTGGGTGGCAGACGCCATCGGCGAGGGCATCTACGAGGCGCACATCCGCCTCAACGGTTACCCCTTCCTGGAGGCCAAGGAGGAGTTTAGCCATAAGACCCTGGCCATGGACGTGATGCGGCCGCGTCGCAGTGACCCGCCGCTCTCCGTACTGACCCAGGACGGCATGACGGTAGAGGACGTGGAGACCATGATCACAGAGACCACCTACAGCGGTTTCCCCGTGGTGGTCTCCCATGAGTCCCAGCGCCTGGTGGGCTTCGTGCTGCGCAGGGACCTCACCATCTCCATAGataATGCCAGACAGCGTCAGGATGGGATAGTGAGCACCTCGAGGATCTTCTTCACGGAGTACACGCCCCCTCAGCCCCCCAGCAGCCCCCCTCCTCTGAAGCTTCGGGGCATCATGGACCTTAGTCCCTTCACTGTCACAGACCACACCGCCATGGACATTGTGGTGGACATCTTCAGGAAGCTGGGCCTGCGCCAATGCCTCATCACACACAATGGTCGGTTGCTGGGGATTATCACAAAGAAGGACATTCTGAAGCACGTGGCCCAGATAGCCAACCGGGACCCAGACTCGATCCTCTTCAACTGATGCTTCAGTACCAGCTGCAGAACCTTTGGCCAGACACCACTGTGGAACCACAGCTTTTACCCAGGCCGGTCTCCAGGCCAACTCCATTGCACTATGTTCATGTCTAACTAGTGGATTTCCTCCCACTTATGAAAGCATTGCAGTGACAACTGACCGCTTCATTAGAACTATAGAGGCAGAGAATTCATTGCACTTCAACAGCAAGCTGGCTTTCCAGGATTGACCCAAACGATGAACTGGATTTAGGAGAAAGTCTATGGCTTAATTAAATGACCGTCGGTAACGGGGAGAAAATTTTTCCCCCTTGGCCGTGAAGGCAGGAGTGGTCTTCCTCGTCAGCTGTTCAAGTATAGCATGTGTCTCCTAGAGCTACCAAGGATCCTAAAGGAGCTGAGACCAAGTCTGGAATCCTGAGGGACAAGCCAAACCACTGCCATTTGAAAACTTAACCCCCATACAATCACTAAGCTAGGAGTGGAAATAATCAGCTTCAACCTATCAATCACAGTTGAAAGTGTGAAGTTACTGTCTGCCTGACATATTTATGTCGGTGTTCAAGTCTTTTTCCCGGGTGTAATAGCTAAACACTTTAGCTCCAAAGAAATGTATGTTTCTTTGGCAttgtcttttttgttgttgtcatgtaaTGGGTGGTGGTTTTGACACAGACCAGGAGATGACAGACACACTATTACAGACTAAAATAACCTTCCTCGGAAACATGCGTGCTGTGGTTATCCTCTTTGACCACAGGGAGGCACTACTGTGCGCTAACCAGCACTAACCGGTTTAGTCTCTCCAGAATTCTGCTATCGATTCTTCTTTTTTTGTCAATTTGGCATATTATGCGATGGCTTGCAAATTTGACCAATCACCACAACAATTTCCACGTGAAACAGTCTAATTATTGCGTTAAACTGACCCATCACCGCAGGGCAAACGGTGAATCTCAGCCAATCACTGCACATTTACAGCGTAATGTGGTTCAATCAAGCCACTCGTCAACAAAATGCTTCCCTCATCAGCACATGCAAAATGTCAGAATTGCCGCAGCGAAGGCAAGGTTTTTGTCCTGCAAATATCACCAAAAAGCCCGGTGCAATCCAGGAGGGACTGATTACTAAACTTTATCAACTGATCAGTAACACTCAAAAGTGCAACCGTGAAAATATGCATTACTCATTTTGAAGACGCACCCCTATATTTCTGAGCTTCATGACCTTTTCAGTGACTAGTATTTATTGCACCCATATACTTGCATCACAAGTACACCGATCACTTTATCCAGCACACTACACAATCATCAAGTCAGTGATGATCAGTCTTAACAGGCAGTCTGAGGTCATGGACAAGATCAGTGTTGGTATATTATGGAGTGAtcgagaggaggaagaggtctcCAGTATGTCACATCTCATATCGTCTTCCTGTTATCTCCTCGTCTGACATACATATAGAGGGGCACACGTGTCCAGTGTTCTTGTTGCGCTCACTTCCTTGTCTTCTTGCTAAAGCCCCAGGCAAGGGCTGGCGGATCTAGAGAGAGGACTGGCCTGTCAACACTAGTGAAGAACTCTggatctctttctccctcttaaCTCATCCTCTTACTGTCTCACGAGACCCTCGTGTCGTAAGACGTCAAAGTCCACACTAAGAATGAGCGACTGAAGTGTAGCGTACGCTCTTAAACGCGAACCGAGCTGAGGAACCTGCCCTGCGAGGAATGCTCAAATCTCACTTTTACCTTGAGCAGGTTGATGGTGGCCATTCTTAAGCTATGTTTATGGATTCGTTGACACCCTGTTTTATCCATAAGTGTGTCTccattgttgtattacttgtatACTGTAGTTAATTTTAACTGTAGGGTCTCATATTTCATTTTGAATGCACTTTATTTACAAATAAAGTACTTATCAGGTTTTttgttgttggggggggggggtgtagctaGAGTTACATTATTaaactgtgtgtctgtttgtattAGTATTTATCCTCTCTGCAATGGTTTTGTATCACTACCATCTGCAATGGTTTTGTATCACTACCATCTCATGTAAAGGTGCACCTGAGATTCAAAAATGTGAAAGATGAATAATTTATTCCCCCTGTCATTTCAGCTTTGCTATGAATTAAAACCATGTTAACTTTCACATGAA

Function

NR:

description
H(+)/Cl(-) exchange transporter 5

GO: NA

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618863.2 True 4745 mRNA 0.51 14 48395880 48413217

Neighbor

gene id symbol gene type direction distance location
LOC110534154 LOC106602958 coding upstream 41078 48337509 ~ 48354802 (+)
rab38c LOC106602959 coding upstream 59039 48333329 ~ 48336841 (+)
LOC110534152 LOC106602957 coding upstream 74061 48307951 ~ 48321819 (+)
LOC110534150 snx12 coding upstream 90760 48294185 ~ 48305120 (+)
LOC110534146 zic3 coding upstream 190506 48201242 ~ 48205374 (+)
LOC110534160 LOC106602953 coding downstream 70971 48484188 ~ 48488509 (+)
LOC110534159 LOC106602952 coding downstream 77046 48490263 ~ 48503743 (+)
LOC110534162 LOC106602950 coding downstream 99905 48513122 ~ 48524465 (+)
LOC110533135 NA coding downstream 116602 48529819 ~ 48532846 (+)
LOC110534164 t185l coding downstream 132001 48545218 ~ 48549943 (+)
G896226 LOC106602963 non-coding upstream 147792 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 175231 48220368 ~ 48220649 (+)
G896210 NA non-coding upstream 177473 48218050 ~ 48218407 (+)
G896155 fam89b non-coding upstream 288899 48104479 ~ 48106981 (+)
G897121 NA non-coding downstream 111309 48524526 ~ 48524766 (+)
G897165 atg4a non-coding downstream 125325 48538542 ~ 48539153 (+)
G897207 NA non-coding downstream 183134 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 253559 48666776 ~ 48668107 (+)
G896217 NA other upstream 160264 48235182 ~ 48235616 (+)
G896043 NA other upstream 484905 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1178809 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1191038 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1244331 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 263040 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 864485 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 1017182 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1621773 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 4037001 52450218 ~ 52475365 (+)

Expression

LOC110534157(LOC106602954) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 12.
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LOC110534157(LOC106602954) Expression in each Bioproject

Bar chart with 21 bars.
LOC110534157(LOC106602954) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network