XLOC_002752 (pcolcea)


Basic Information

Item Value
gene id XLOC_002752
gene name pcolcea
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22789319 ~ 22803854 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005098
TCTGGCTCTAATTAAAACCTTCCCCTTGCTCGTCCCCCCCATAGCGTCACTTTTTCAGTCCCTTAGCATCCCTCCCTCAAAcctccttctcctccttctcGTCCCGGGTCGTGTGTCCTGTGGCCGCATCTGCATGAGGAGCTCAGTGCTGCTGGATATGGAGCATTTGACTGTGGTGTGGAGTTTGTGGCTTCTTCTGTCTCTCAGTTTTGGAGGGGTCTTGTGTCAGACCACCAACTACACCAGGCCCGTGTTTAACTGTGGAGGGGATCTGGTTGGAGACTCAGGCTTTGTGGGAAGTGAAGGATTCCCATCGTTTTACAAACCCAACAGCAAATGTACTTGGTACATCACGGTCCCAGAGGGCAATGTGGTGATGCTGTCCTTCAGGATTTTTGATCTGGAAGCTGATCCTCTCTGCCGCTATGACTATGTGGATGTTTATAACGGACACTCAAACATGGTGCAGAAGCTCGGTCGCTTCTGCGGGACATTCAGGCCTGGGGCTCTCATCTCCACGTCCAACACCATGATGGTCGAGATGGTTTCAGATTCAGGAACTGGAGGCAGAGGGTTCGTGGCCTACTTCAATGGTGGAAAACCACACGTGGATGagcaCCAGTTTTGTGGTGGGAAGCTCACAAAATCTCAGGGCACGATCAAAACTCCCAATTGGCCAGAGAAAAATTATCCACCGGGCATCAGCTGTTCTTGGCTTATAACAGTGGAACCAGAAATGgTGATTGAAGTGAAGTTTGATAAGTTTGATTTAGAATCTGACACTTACTGCCGCTTTGACTATGTGGCGTTCTTTAACGGAGGAGAGAAAGACGATTCGAGGCGCATCGGAAAGTACTGTGGATACACTGCACCTCAGAACATTGTTACGAATAGCAACGTGCTGTTAGTGCAGTTCGTATCTGACCTGAGCGTGACTTCGGACGGATTCATGGCGTCATACACCAGCATCCCGCGTGGTCTCCATTCTCCGTCTGCAGGTGGCGATGTTGTGTCAGGACCAAGAGTGTCTTCAACACCCACAAAACCTAAAATCATCCCAGCAAAACCTGTCGTAACAACAGAAGCGATAACTACAACTACAACCACTACTACAGAGGCACCGGAACAGCCAAAGCCCCGACCTAAACCAGTTAGACCCATTAAACCTGTGAAGCCTCCAGTCCGTAAACCAGAGCCTGAAAGACCCAGACCTGCCACCGAAACAAACCCACTGTGTGCAAAGGCATGTAAAAGAGATGGAACTATCAAGACAAGCTTCTGTGCAAGTGAATTTGTGATCACCGGTACACTGACAGCATTGACTGCTGGACCTAGAGGAAGTATGCAAGGCACCGTGTCCTTAATTAAAGCCTATAAGACTGGCAGACTCACAATCACCCAAGCTGGAGAAACCATGTCTGTCAAACTCATGATGCCCTGCAAGAAATGCCCATTGCTGCGCAGAGGTCAAAACTACATCCTGATGGGTGAGGTGGACGATGAAGGCCGTGGTGTTCTCAATCCTGGCACTTTCACAGCTCTTTACAAAGCCCCACATCACAAAATGCTGACCAACATCAACAACCAGCCATGCTGATCTGCTCCCTCATATATCCATGTAAACGTGAGCAACATGTGGAGAAAAGACACTAGATGAAAGCAATGGCTATGGACAGTGATTAGACAAGATAATAAGAGGTCTTGTTTGGCTTGCTCAGGAAGTCATGCAAAACTTTTCTGGACTGATTTGATTCAACTATGGTGCATTCCAAACTTGATAGTTTTTATAGCTCGTATAGACAACACAGAGATGTCACTAAATATATGTGTAACTTATGATGATGTCATCTGATTTATATAACACAATATTGCATTGAATTTGACACTGTGTTGTTTTATTGACAAGggatttgttttcattcattgaaAGCTGGTTTTGGTTCAAATACATCTTTGACACAGATTTAAACCATGAGCACATACTAAACTGGTGATGTGGTTAAAATAACACTTCTCTTTTCT
>TCONS_00005099
GTCCTGTGGCCGCATCTGCATGAGGAGCTCAGTGCTGCTGGATATGGAGCATTTGACTGTGGTGTGGAGTTTGTGGCTTCTTCTGTCTCTCAGTTTTGGAGGGGTCTTGTGTCAGACCACCAACTACACCAGGCCCGTGTTTAACTGTGGAGGGGATCTGGTTGGAGACTCAGGCTTTGTGGGAAGTGAAGGATTCCCATCGTTTTACAAACCCAACAGCAAATGTACTTGGTACATCACGGTCCCAGAGGGCAATGTGGTGATGCTGTCCTTCAGGATTTTTGATCTGGAAGCTGATCCTCTCTGCCGCTATGACTATGTGGATGTTTATAACGGACACTCAAACATGGTGCAGAAGCTCGGTCGCTTCTGCGGGACATTCAGGCCTGGGGCTCTCATCTCCACGTCCAACACCATGATGGTCGAGATGGTTTCAGATTCAGGAACTGGAGGCAGAGGGTTCGTGGCCTACTTCAATGGTGGAAAACCACACGTGGATGagcaCCAGTTTTGTGGTGGGAAGCTCACAAAATCTCAGGGCACGATCAAAACTCCCAATTGGCCAGAGAAAAATTATCCACCGGGCATCAGCTGTTCTTGGCTTATAACAGTGGAACCAGAAATGgTGATTGAAGTGAAGTTTGATAAGTTTGATTTAGAATCTGACACTTACTGCCGCTTTGACTATGTGGCGTTCTTTAACGGAGGAGAGAAAGACGATTCGAGGCGCATCGGAAAGTACTGTGGATACACTGCACCTCAGAACATTGTTACGAATAGCAACGTGCTGTTAGTGCAGTTCGTATCTGACCTGAGCGTGACTTCGGACGGATTCATGGCGTCATACACCAGCATCCCGCGTGGTCTCCATTCTCCGTCTGCAGAGGCACCGGAACAGCCAAAGCCCCGACCTAAACCAGTTAGACCCATTAAACCTGTGAAGCCTCCAGTCCGTAAACCAGAGCCTGAAAGACCCAGACCTGCCACCGAAACAAACCCACTGTGTGCAAAGGCATGTAAAAGAGATGGAACTATCAAGACAAGCTTCTGTGCAAGTGAATTTGTGATCACCGGTACACTGACAGCATTGACTGCTGGACCTAGAGGAAGTATGCAAGGCACCGTGTCCTTAATTAAAGCCTATAAGACTGGCAGACTCACAATCACCCAAGCTGGAGAAACCATGTCTGTCAAACTCATGATGCCCTGCAAGAAATGCCCATTGCTGCGCAGAGGTCAAAACTACATCCTGATGGGTGAGGTGGACGATGAAGGCCGTGGTGTTCTCAATCCTGGCACTTTCACAGCTCTTTACAAAGCCCCACATCACAAAATGCTGACCAACATCAACAACCAGCCATGCTGATCTGCTCCCTCATATATCCATGTAAACGTGAGCAACATGTGGAGAAAAGACACTAGATGAAAGCAATGGCTATGGACAGTGATTAGACAAGATAATAAGAGGTCTTGTTTGGCTTGCTCAGGAAGTCATGCAAAACTTTTCTGGACTGATTTGATTCAACTATGGTGCATTCCAAACTTGATAGTTTTTATAGCTCGTATAGACAACACAGAGATGTCACTAAATATATGTGTAACTTATGATGATGTCATCTGATTTATATAACACAATATTGCATTGAATTTGACACTGTGTTGTTTTATTGACAAGggatttgttttcattcattgaaAGCTGGTTTTGGTTCAAATACATCTTTGACACAGATTTAAACCATGAGCACATACTAAACTGGTGATGTGGTTAAAATAA
>TCONS_00005100
tgaattagcatgttgctagtatgtttatagtataaattagcatgatgctagtatgtttatagtatgaattagcatgatgctagtatgattagtatgccGTTAATATGTTTTGAGCATGAATctgtatgttgttagtatgtctaatgtaaagtcaatggcaatTTGTTTCAATGGACGTCTATGGGAGAGTTGCTTTGATGCTgtcagtggttgctagggtgtggctggtaagttgaaaggtcattgATGATTGAGAGATTTGTAGTCTGATttaaatgagcccaaccttaagtctgtatgacagtctggcacaAAGGTATGAGGTCACAaattttggtccaatgttaagtcaaacAGTTTTCGAAAAACTGTTGGAAAAGATGTAGCAACCTGAGGAGGTTGAAGGTATGGTATATGTTTAGTGGTTGTAGTATTAATGGTCTAGAAGGAGATGCATGTAGAAATCAAATTactctcagaagaagaagaagaacacgtttatgtagtataacagtatgttacctttctcaagccaccataaatgCAATGATAATGTACAATACATAATGTATATACTGTGCTTTGCTATTAAAATCCTGAAATACATGAAAATCCATGGACCTTTATtagcttttaaaattattttgtataaatatctGCCGTCTATTTAACTGTATTTTGACTGAAATCTCATGACAGATAGCAAAAGCAATTATTACAATTAATGTATGTAGTGCTTATGAATCTTTAGTATTTATGTATCTTTAATAGCAGTAATTCAGTTGTTGTTGGTCCATCTGTGTGCATCTGTTTGTACTTTGTGAGATTGTGTTTTGCAAACTATGTCTTGACTCATGTGTTTATTGTGCAATATAAACACATTCATATGAGCCATTCTCTTATAGTGAAATCTCTCTTTTTCACCATTCCTCGCTTTCTCAGGCCCGTGTTTAACTGTGGAGGGGATCTGGTTGGAGACTCAGGCTTTGTGGGAAGTGAAGGATTCCCATCGTTTTACAAACCCAACAGCAAATGTACTTGGTACATCACGGTCCCAGAGGGCAATGTGGTGATGCTGTCCTTCAGGATTTTTGATCTGGAAGCTGATCCTCTCTGCCGCTATGACTATGTGGATGTTTATAACGGACACTCAAACATGGTGCAGAAGCTCGGTCGCTTCTGCGGGACATTCAGGCCTGGGGCTCTCATCTCCACGTCCAACACCATGATGGTCGAGATGGTTTCAGATTCAGGAACTGGAGGCAGAGGGTTCGTGGCCTACTTCAATGGTGGAAAACCACACGTGGATGagcaCCAGTTTTGTGGTGGGAAGCTCACAAAATCTCAGGGCACGATCAAAACTCCCAATTGGCCAGAGAAAAATTATCCACCGGGCATCAGCTGTTCTTGGCTTATAACAGTGGAACCAGAAATGgTGATTGAAGTGAAGTTTGATAAGTTTGATTTAGAATCTGACACTTACTGCCGCTTTGACTATGTGGCGTTCTTTAACGGAGGAGAGAAAGACGATTCGAGGCGCATCGGAAAGTACTGTGGATACACTGCACCTCAGAACATTGTTACGAATAGCAACGTGCTGTTAGTGCAGTTCGTATCTGACCTGAGCGTGACTTCGGACGGATTCATGGCGTCATACACCAGCATCCCGCGTGGTCTCCATTCTCCGTCTGCAGGTGGCGATGTTGTGTCAGGACCAAGAGTGTCTTCAACACCCACAAAACCTAAAATCATCCCAGCAAAACCTGTCGTAACAACAGAAGCGATAACTACAACTACAACCACTACTACAGAGGCACCGGAACAGCCAAAGCCCCGACCTAAACCAGTTAGACCCATTAAACCTGTGAAGCCTCCAGTCCGTAAACCAGAGCCTGAAAGACCCAGACCTGCCACCGAAACAAACCCACTGTGTGCAAAGGCATGTAAAAGAGATGGAACTATCAAGACAAGCTTCTGTGCAAGTGAATTTGTGATCACCGGTACACTGACAGCATTGACTGCTGGACCTAGAGGAAGTATGCAAGGCACCGTGTCCTTAATTAAAGCCTATAAGACTGGCAGACTCACAATCACCCAAGCTGGAGAAACCATGTCTGTCAAACTCATGATGCCCTGCAAGAAATGCCCATTGCTGCGCAGAGGTCAAAACTACATCCTGATGGGTGAGGTGGACGATGAAGGCCGTGGTGTTCTCAATCCTGGCACTTTCACAGCTCTTTACAAAGCCCCACATCACAAAATGCTGACCAACATCAACAACCAGCCATGCTGA

Function

symbol description
pcolcea Predicted to be located in extracellular region. Orthologous to human PCOLCE (procollagen C-endopeptidase enhancer).

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-370 Predicted to be located in extracellular region. Orthologous to human PCOLCE (procollagen C-endopeptidase enhancer).

Ensembl:

ensembl_id ENSDARG00000056913

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005098 False 2022 mRNA 0.46 9 22789319 22803854
TCONS_00005099 False 1777 mRNA 0.46 10 22789333 22803740
TCONS_00005100 True 2293 mRNA 0.42 8 22789744 22797959

Neighbor

gene id symbol gene type direction distance location
XLOC_002751 AL807389.3 coding downstream 36971 22752232 ~ 22752348 (-)
XLOC_002750 NA coding downstream 181604 22604273 ~ 22607715 (-)
XLOC_002749 NA coding downstream 222111 22554349 ~ 22567208 (-)
XLOC_002748 NA coding downstream 254395 22530785 ~ 22534924 (-)
XLOC_002747 zgc:172339 coding downstream 283275 22501763 ~ 22506044 (-)
XLOC_002753 per1a coding upstream 5861 22809715 ~ 22831611 (-)
XLOC_002754 vamp2 coding upstream 34510 22838364 ~ 22845485 (-)
XLOC_002755 and3 coding upstream 44702 22848556 ~ 22854758 (-)
XLOC_002756 si:ch1073-143l10.2 coding upstream 103497 22907351 ~ 22912255 (-)
XLOC_002757 rnasekb coding upstream 112259 22916113 ~ 22918214 (-)
XLOC_002745 NA non-coding downstream 297861 22481158 ~ 22491458 (-)
XLOC_002761 NA non-coding upstream 709268 23513122 ~ 23519215 (-)
XLOC_002762 NA non-coding upstream 714207 23518061 ~ 23520243 (-)
XLOC_002763 NA non-coding upstream 745122 23548976 ~ 23549882 (-)
XLOC_002764 NA non-coding upstream 976688 23780542 ~ 24049205 (-)
XLOC_002768 CU467963.2 non-coding upstream 1579412 24383266 ~ 24383381 (-)

Expression


Co-expression Network