LOC110534160 (LOC106602953)


Basic Information

Item Value
gene id LOC110534160
gene name LOC106602953
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48484188 ~ 48488509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618865.2
GTAACCTATTGCCGACTGGGGGCTTTGTCTAATTCATCATTAACCAGGGTCTTACAAACTTCTGGGAATTGGTCAAAGCTGTAGTGATAGTTGAGTTCAACCATTGGGATAACAATTATCGTGTCAAGAAATGGGACTAACTCAGAAATGTTTCGGTTTCTTTTGCAGATTTGGTATAAAATAATCATAATAAACAACAGGAACATCCAAGGACACGAAGAACTTAACCTCCAGTCTGCCATTGACATCGCATAAATATTTGTTGGGCTCCCTAGTGGTGCCTTGGAACACAGGTGATGGCTGAGCACAGCAGCAACCCTGCTTGGAGGGTCCAGGCTGGCTCCACCCTAGCCTCGCTCAGTGACAGGATGACTCTGCCAGAGAGCACTACCGTTCTCTTTAATCTGAGTTTCCCAATGGAATGGAATCAGTCTGACACCAGACCAGAGACACCTGACAATGATAAGAACTGGCCTGCTCTGCTCATTTTGCTGGTCATCTTCTTCACTGTGGCAGGCAACATCCTGCTCATCTTGGCTGTGTCTCTGGAGAGGAAGCTGCAGAATGCCACCAGCTTCATCCTGCGCTCCCTGGCTGTGGCAGACATGCTCGTGGGCTTTCTCGTCATGCCGGTCTCACTGATTAACATTCTCTATGACTACCTGTGGCCCTTCCCCAGACCCCTTTGTCCCATCTGGATCTATCTAGACGTGCTGTTCTCCACAGCATCCATCATGCACCTGTGTACCATTTCACTGGACCGCTATGTGGGCATCTGTAACCCCATCAAACACAGCCGCTCCAACTCCCTCTCCAAAGCCAAGGCTAAGATCGCCCTCGTCTGGAGCATCTCCATAGtgaTCTCCATGCCCATCCCTGTGATTGGCCTGTATGATGAGGGGAAGGTGTTTGTCAATGGGATCTGTGTACTGAACGAGCACAGCTTCGTCCTGATTGGCTCCTTCGTAGCCTTCTTCGTCCCTCTGGTCGTCATGGTGGTCAGCTACTGTTTGACCGTGCGCGTGCTGCAGTGCCAAGCCTCTGATTACCTGCACGGAGGCATGGCTTCGATCGACCGGCCTACCTTACTCGGGATCACCCCAAGGCTCCCCGCAGGGGACAGTCTTAGCCTCCTCAAACAGGACCCTAGTCCCGAAACCTTCAATATTTCCGTCTCTCAAGCCTCCTCGCAACCCGTCTCTCCAGCAGGGAGGCAGGAGCCAGGGGGACCTGGTGGGAAACCTGGCGTGGCTCAATCAATCAAAAATGAGAGGAGAGCCTCCAAGGTCCTGGGTGTGGTGTTTTTCCTCTTCCTGATGATGTGGTGTCCGTTCTTCATCACCAATGTGCTAAGCGTGTTGTGTGAGGACTCGATAATAAGCATGTGCAATAAGCCCGTGTTGGCAGTGCTCCTAAATGTCTTCGTTTGGGTGGGATATGCCTCTTCTGGTGTCAACCCACTGGTCTACACTCTATTCAACAGGACCTACAGACAGGCCTTCCACCGCTACCTACGGTGTATCTACCACAGCCCGCCAGCCAAGAGCACCCCAACCTACCCTGTCTTTCCTGTTTACACCGTCACCCCTATTCTCTGCGGGAAAGATGCCAGCCGGCTGTAACTGTAGCAGACACAATGGGATTAATGGGGTGTGTTAATGGCAGAATGAGGTTGGAGAGAGTGTaaaaaaaaagttctgggacgtTAGAGAAGTTGGTCAGCGTCCGTCCCACCCCCCGCTGAGCACGTCAGCTGTGTCTGAACTAGCTAGCTGGcctccaggctctctctctctcactctctctctctctctc

Function

NR:

description
5-hydroxytryptamine receptor 2A-like

GO: NA

KEGG:

id description
K04157 HTR2; 5-hydroxytryptamine receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618865.2 True 1815 mRNA 0.52 3 48484188 48488509

Neighbor

gene id symbol gene type direction distance location
LOC110534157 LOC106602954 coding upstream 70971 48395880 ~ 48413217 (+)
LOC110534154 LOC106602958 coding upstream 129386 48337509 ~ 48354802 (+)
rab38c LOC106602959 coding upstream 147347 48333329 ~ 48336841 (+)
LOC110534152 LOC106602957 coding upstream 162369 48307951 ~ 48321819 (+)
LOC110534150 snx12 coding upstream 179068 48294185 ~ 48305120 (+)
LOC110534159 LOC106602952 coding downstream 1754 48490263 ~ 48503743 (+)
LOC110534162 LOC106602950 coding downstream 24613 48513122 ~ 48524465 (+)
LOC110533135 NA coding downstream 41310 48529819 ~ 48532846 (+)
LOC110534164 t185l coding downstream 56709 48545218 ~ 48549943 (+)
LOC110534165 LOC106602949 coding downstream 61575 48550084 ~ 48551178 (+)
G896226 LOC106602963 non-coding upstream 236100 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 263539 48220368 ~ 48220649 (+)
G896210 NA non-coding upstream 265781 48218050 ~ 48218407 (+)
LOC110534146 zic3 non-coding upstream 278835 48201242 ~ 48205374 (+)
G896155 fam89b non-coding upstream 377207 48104479 ~ 48106981 (+)
G897121 NA non-coding downstream 36017 48524526 ~ 48524766 (+)
G897165 atg4a non-coding downstream 50033 48538542 ~ 48539153 (+)
G897207 NA non-coding downstream 107842 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 178267 48666776 ~ 48668107 (+)
G896217 NA other upstream 248572 48235182 ~ 48235616 (+)
G896043 NA other upstream 573213 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1267117 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1279346 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1332639 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 187748 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 789193 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 941890 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1546481 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3961709 52450218 ~ 52475365 (+)

Expression


Co-expression Network