LOC110534159 (LOC106602952)


Basic Information

Item Value
gene id LOC110534159
gene name LOC106602952
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48490263 ~ 48503743 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618864.2
CATGTACGCATGCGTCGTGGTTTCGCTGCTGCAGAGCGTTCGCGTTCCACGGTCGCGGAGGAAAGCCGACGCTGCCAAggaaacacacatgcagacataAGGGAATCCAGATTTCAGCATCGTCGTCCATTCCCTTGACTTCGATAATTCACCGGTAGTGATGGTAGCGCGCAGTAACGCATTTGACCTATAGATCTATTCCACGCGCGATGTCTAAATAGCTGCCAAATAATACAGGCAACGAGAAGAGGTAAAATAAACCAAATAAAAAGTAAAGGGAAAGACAAACCAGTGGTGAGTGTGTGTAGGGTGCAGCCGCCATGCCGCTGGTGAAGAGATGCATCGAGCCCAGGCACCTGTGCCGTGGAGCCGTGCCGGATGGGGTCACCAGCGAGCTGGAGTGTGTCACTAACAGCACCCTGGCAGCCATCATCAAACAGTTGGGGGGCCTGAGTCGACATGCAGAGGACATCTTTGGAGAGCTGTTCAACGAGGCCAACAGCTTCTACATGAGAATGAACAGCCTCCAGGAGAGAGTGGACCTGCTGGCTGTCAAAGTCACCCAGCTGGACTCCACTGTGGAGGAGGTTTCGCTGCAGGACATCAACATGAGGAAGGCTTTCAAGAGCTCCACCATCCAGGACCAGCAGGTGGTGTCCAGGAACTCCATCCTCAACCCCGTCATGGAGATGTACCATCGCTGTGACAAACCTCCACCCCTAAACATCCTCAGCCCCTACAGGGATGACAAAAAGGATGGCCTTAAGTTCTACACAGACCCATCCTACTTCTTTAACCTGTGGAAGGAGAAGATGATCCAAGCAACAGAAAACAAGCGGAAGGAGAAGAGGAAGCAGAAGGCGGGTGACAAGGAGCAGAAACAGGTGGAGGACCCCAGCCGGGAGGTGAAGAAGGTGAGGAAGGCCCGGAACCGCCGTCAGGAGTGGAACATGATGGCCTACGACAAGGAGTTCCGTCCAGACACCCGCCTCACGCCTTCACCCTACCATGGCATGTCCTCTGAGGGATCCCTCTCTCCAGACAGGTCTGGTATGTCTGATGAACAGTCCTACCCTGCCAGCCCTAACCACCCACCCCAGGAGGGAGTTGTGCTGGGTCCTGATGGGAAGGAGCACCTAACAGGCCCCAACCAGACCCAGTCCCTGGACCGGGCCTACCGCCCCCCTGCTGCTGCTACCACTGCAGCTCAAGGCCGCCAGCATTCCCTGGGCCGCATGCAGCCCCACCACGGACCCACACCTGCAGACCCATCCCTGAACGGACCCCGGCCCGCAGCTTCCAAAGAGGCCAGCGGTCACCAGATGCCAGAGCACTTTATCCCTCCGGCCCCgcccccacctcctcccctcatcccctcaGCCCAGACAGCCTTTGACAGCAAAACAGGGCCTCCCACCCTGGCCCCTGGCACAGTGGCCACCCTGTCCCGCCCCTACAGCCCCTCACCCCCTCCGCCCCCACCCGCTGGCTAtgtcccctctccatctcaccctgtCACTGGAGGACCTCCTGTtgcccctcctccacccccacctGGTGGCCCCCCAACATTCGCTCCCTCTCCAGCCCATGCCATACACCCCTCTGGGGGAACACTGCCAAGGAAGGGCAAGGTGCTAGGCATCCCGATAAGTGACGCACGCAGCGACCTGCTGTCAGCCATCCGCAGAGGCATCCAGCTGAGGAAGGTGCAGGAGCAGCGTGAGCAGGAAGCCAAGAAGGAGCCAGTGGGGAACGACGTGGCCACCATCCTGTCCCGACGTATCGCAGTGGAGTACAGCGAATCAGATGAGGACTCGGAGCCTGAGGAGAACGAGTGGTCAGACTGAGACGGAGCAGAGGGCTTAGGCTTACTTTACTTACCTACAGAGTGCTGCTATTCCAATAACaggaaacacacaccacacacacacacacacacacacacacacacacatacacacacatacacacacacacacacacacacacacaccacacacacacacacacagtcatcgcACACTACGTCTCGATAGACCTCTTGTTAGAGGAAGTAGATGAGAAAGTAGATGAGGAGACGCTTACACAGTATGACAGTATCCATTATCTAGTCAGATATGGGCTGAGAGGAAACCACAGTGGATctg
>TU1020670
CCCCAACATTCGCTCCCTCTCCAGCCCATGCCATACACCCCTCTGGGGGAACACTGCCAAGGAAGGGCAAGGTGCTAGGCATCCCGATAAGTGACGCACGCAGCGACCTGCTGTCAGCCATCCGCAGAGGCATCCAGCTGAGGAAGGTGCAGGAGCAGCGTGAGCAGGAAGCCAAGAAGGAGCCAGTGGGGAACGACGTGGCCACCATCCTGTCCCGACGTATCGCAGTGGAGTACAGCGAATCAGATGAGGACTCGGAGCCTGAGGAGAACGAGTGGTCAGACTGAGACGGAGCAGAGGGCTTAGGCTTACTTTACTTACCTACAGAGTGCTGCTATTCCAATAACaggaaacacacaccacacacacacacacacacacacacacacacacatacacacacatacacacacacacacacacacacacacaccacacacacacacacacagtcatcgcACACTACGTCTCGATAGACCTCTTGTTAGAGGAAGTAGATGAGAAAGTAGATGAGGAGACGCTTACACAGTATGACAGTATCCATTATCTAGTCAGATATGGGCTGAGAGGAAACCACAGTGGATctggggctggggggggggggggggggggggggggcaggcacaGCAAGCAGGCACAGCAAGCTTATacttatatatataatatgatatagtataatatattaCTTATGGGTCCAGTATAAAAGTGTTTCTTTCATGAGTCCTGATATTGTAGTTTGAATATTATTTGTGCTTTCAGTTGCATTTAGACTTTCAATGCATCTCCTCCACCTGTAAATGAGCCACACCAACACCACAGATGTTGTTTTCTAGGTGAAGATGCTATGGCATTCTTTCAACTCATCTAACTGGATGCACTTAAATATTTCTTCATTGAAAAGCATTATTTAGAGTCATCTTCTATTCTGGCTGTGCTGTTTGTGATAACTGTGCATATGAAGATGATGTCACATCAAGTGTTAAATCAGGCGGGTGGATACTTTTGGACATATGATGCTGTAGCCGTAACCGTATTGTCAACACAGCTTTTTGTCATCTGAGGGATGTTCCTTTAATTTTGTCACTTTGTTCAATTGTTTACAGTGTTGTGGTTGAGTATTGATACCCTAACAGGCAGTGTTTAACATCAGTTGTCGTTTTTTGGTTTACATCATTTGCTAAAGATTTGCTGGTTGACTAATGACCACTGTGTAAGACAGACACTAACATGGAAATTATTTTGGGGTTTATTTTCTCTATTGtactttgtgtgtgcgtgcgtgcgtggtgtgcgtgcgtacgtggtGTGCGTGTCAGCGAAAGGGAATATCTCAATGCCTTGCTGTTTCCTTCTTTTCTGACTCACTTCTTTTATGTTGAAGGCCTGGAGAGATAGTATCTGATTGCTGGTGGGCTTGTCGTCCATTTTGACTAACGTTCTACtggaagagatgagagagggttCATAGCAGTGTTTTCGGACATACTGACCCTGTGTTCTATTAAGTCATGTGTTTGTACAACTACTGTGTTTTACAATTCATTGttgtatagattttttttgtaaCACTGCTTGTACAAATGAATTTGGGTATCTAGATATGAAATGACTATCACACTGATCGAACCTGGAAATAATAAGGGCATGTGTGAGGGGGTAATAAAATGAAATAAGTGTTAC

Function

NR:

description
wiskott-Aldrich syndrome protein family member 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618864.2 False 2150 mRNA 0.57 9 48490263 48502650
TU1020670 True 1680 lncRNA 0.44 2 48501894 48503743

Neighbor

gene id symbol gene type direction distance location
LOC110534160 LOC106602953 coding upstream 1754 48484188 ~ 48488509 (+)
LOC110534157 LOC106602954 coding upstream 77046 48395880 ~ 48413217 (+)
LOC110534154 LOC106602958 coding upstream 135461 48337509 ~ 48354802 (+)
rab38c LOC106602959 coding upstream 153422 48333329 ~ 48336841 (+)
LOC110534152 LOC106602957 coding upstream 168444 48307951 ~ 48321819 (+)
LOC110534162 LOC106602950 coding downstream 10472 48513122 ~ 48524465 (+)
LOC110533135 NA coding downstream 27169 48529819 ~ 48532846 (+)
LOC110534164 t185l coding downstream 42568 48545218 ~ 48549943 (+)
LOC110534165 LOC106602949 coding downstream 47434 48550084 ~ 48551178 (+)
LOC118936701 NA coding downstream 64926 48567576 ~ 48568413 (+)
G896226 LOC106602963 non-coding upstream 242175 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 269614 48220368 ~ 48220649 (+)
G896210 NA non-coding upstream 271856 48218050 ~ 48218407 (+)
LOC110534146 zic3 non-coding upstream 284910 48201242 ~ 48205374 (+)
G896155 fam89b non-coding upstream 383282 48104479 ~ 48106981 (+)
G897121 NA non-coding downstream 21876 48524526 ~ 48524766 (+)
G897165 atg4a non-coding downstream 35892 48538542 ~ 48539153 (+)
G897207 NA non-coding downstream 93701 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 164126 48666776 ~ 48668107 (+)
LOC118936702 NA non-coding downstream 335066 48837072 ~ 48838821 (+)
G896217 NA other upstream 254647 48235182 ~ 48235616 (+)
G896043 NA other upstream 579288 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1273192 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1285421 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1338714 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 173607 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 775052 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 927749 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1532340 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3947568 52450218 ~ 52475365 (+)
G896146 f9 non-coding upstream 341720 48098136 ~ 48160174 (+)

Expression


Co-expression Network