LOC110534161 (LOC106602951)


Basic Information

Item Value
gene id LOC110534161
gene name LOC106602951
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48501662 ~ 48508644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618866.2
AACATCACTAGCAGTGTGTCACCCGAGTCTTAACGTCCTCCTGTGAGAAATCGATTTACAAAAGATTTGTTACAATAACGGCAAAAGAAAAAAAGAGGGGTGAAACGGCGCCAGCGGTTACTGGTGATAGTCTCCACCTGGGCGCTCCACGTCTCCATCTTCCCTGTTAAGGAATGCGCCCGGGTAGACCTCAACAAGCCATCGCAACATCACTTGACTGACTGATAGTGACACGCATGGATGCTCTGtgATGATTCACTCTCTGCCGCAGCAATGAGTAACCAATTCAAAAACACCTCTTCCTCAACCTGGGATGTTCAAGAAGGAGGGAATTCCACACCACCTCCATCATTCCAGTTCGAGATGGAACCGGTGGTCATAAGCGTCAACCCCTGGGATATAGTCCTGTGTGTCACGGGAACCCTAATGTCCTGCGAAAATGCAATTGTCCTTGCCTTAATTATTTACACGCCCACCCTGAAAGCGCCCATGTTTGTATTGATAGGGAGCTTGGCTTTTGCGGACCTATTGGCCGGGCTTGGTTTGATAGTGAATTTCACCATCACCTACATTTTTGATACGGGATTCGTGACGCTGCTATCAGCTGGACTGCTCATCACTGCTTTTTCGGCCTCCGTTCTCAATATCCTGGCAATAACGGTGGATAGATACCTCTCCCTTTACAACGCACTGACTTACCACACGGAACGAACGGTGATTTTTACCATCGTCACACTGGTGCTCATTTGGGTGACTAGCATCACTCTTGGTGCGCTACCGATCATGGGATGGAACTGCCTTGAGGATGAGACGACTTGCAGCATTTGCGCCCCCATTGATAAAAATCACGCCGCTGCACTGGCGGTGACTTTTCTTTTTGTGTTTGCACTTATTTTGCAACTATACCTCCAGATTTGCAAGATTGCTTTTCGGCATGCGCAGCAAATCGCCGTGCAGCAGAAGTTCATGACtacctcccactcctcctcccccaccactAAAGGGGTATCCACCCTCTCCATTATCCTTGGCACCTTTGCATTGTGCTGGATCCCTTTCGCCATGTACTCTCTGGTGGCTGACATCGGATATCCCCCTGTCTATACCTACGTCACCGCTCTGCCGGCCATTTGTCACTCTATGATAAACCCCATCATTTATGCTTTCAGAAATCCCGACATACAGAAATCTATGAGAATCGCTTGTTGTTGTGGATGTGTATCTTCCAACTTTTCTCTGCGACCAAGGACACCAAGTGATGTCTAGGCAAACGTTTGAACGTCATAGCCTATCAAGTAGTTACAAGCACATCACAATCTTACTGACTATGCCGAAAAGCTTTGtaagtgttttttgttgttgttgttgtttgcatTTTATTTGTATTGAATAACTGTCCTCTTGTTGCATCTTTTACTGGTGATAGCATTGGGATAGGCCCTTCTCTTCTCGAAACAAAATCGTTCAATCTCTCTAAAAGTGTATTGTGCCAGAGCTACTTGCACCTTTAATGTGGAGGTAGTAGCCTTCACTGTATAGTAAAGGCCTCGTGTTACACCCCATTTTTATTATATATAATAGATGCGTTTATAAGTgtaccccactgggcacagacgtcaattcaactcAAGTTAAttttattccacgttggttcaacgttgattcaactagtGTGCGCCCATTGGGACATGTATTGTGCAGTGGCTCGGTGTTGCTCATAAAGCATTCAGAGTAGCCTAGCGCCCTGACTCAATAGGCAAATAAATACCTGTTCTGTGTCAGTACAACAGGGGGAAGGAAACAAACTAATTCTAATGTCCCCGTACTGATTCAAATCATTGGGAATAATGTTTTTATCAAAGGTTGTTGATTGTTCTTCCGAATGACGCTGAAACGTGGTAGGCTACTGACTTGCTGCGTCTCTGCACCCTCAAAACTATGCCGAAACTGTCCCCTCAGTCTGTTAAATGTTGGGGCAAGTCAAAGTGAGCTGATTTTGTGATTAACGTTTTATTGCGAGGGAGAAAGGCTGGAATGAGTGGACAGCTCAATTCAGCGCCGgccttttcagcaccatggacagtgaaaCGTGAGCTATCACCCACTCAATAACGCACGCGTATGCCTGGTTATGCGAGCTCTGTGGCGTCATCTGCCATAAATAATACAGCAGCAGAGAATAAGCCTCACTTGTGTGCATATTGAATTCAAGACAAAAACAGCAACATAGTGTCAGCCAAAGTTTTCCAAATGAACGCGCCCAGACCGTATCATATATTCCCAGTATGACAGGGCACTCTAAATGTTTAAAGTGGTAAACTCCTTACATTCGCCACGGGCACAACACTACTTGCTTATAATTACAATTGTCCACGTGCAATATCTGTACGCCCATAGCCTACACATCCTCGGTAGAACTAACACATCGACATCTGATTGCGGACAGAAGTCATAATATATTGCTTTATTGGTTATAACATTGCTCATGTTTCCACAGTGAATCAATATTTGTCACACCTAGATTTGTCTGTAGGGTAGTTGTACATAATAGGTGCAGTGCATCTAAATTATGCAAATGGTACAGTTTTGTTCTCTGTTATGTCACTCGTTCCAATATTCGGTAAACACCAATTTTCTACAGAATGTCTTAATTGTTTTGCCTTACTATGTCTCACTGGCAATAATGTATAACTTGTGTAAAGTGATAAACTGAATGACATGTATATGTTGGTTCTCAATAGAAAGGGATCAATATACTTAACAAATAGCCATTTGCCAGTTTAtgactgtatggtacagtatgaGCAGCTCTATGACGTCAATAATGTGTGGTGTACAGCGCTTGAATGATAATGCAACGTCTGTTGTTTGAGATGTGTGTGGAGACCCCTTACAGTATGTAGGCTTATCTACTGCCTATTCTCTAGTTGTGCAGCCAAAGAGCTGCTATAAGCAATCCACAATCATTGGAACCCCCTATGATTCCAGTCAACATTGGTGGGAACTCTGCAACCAGTGTCATCACTATTGAATTGAAGACGATCTTGTGTGTGCCGCCAAGCTTTGCTTGTGTAAGTACTGTATGGAATGCTTGTGTCCGATTCAGATGATTCACTGTCGCTCATCCACCACAGTCAGCATGATTGATTCAGCTATTTAGTATTCTCACAGGGTTTAGAAATCCATACTGTCTTATTGTATTGGTATAAAgctatatttttatatatttattgaaaaaaaatgtatgtagtttgTTTAtctagttgttgttttttaaatcatAAATTATTCATTTTGTCATTAGGAAACAACTTCAGTGTGTCCCGTTCAATGTATTCAAGGAATGATTGTTGTCATAAACGACGCCAAACGATTGCAACACTACTGTCAAATTCGTTTGCTTCCTCAAGATCCTGGACTACTCGTTGTGTTGCATTGGTGACTTCTGTTCAAAACACTTCACCATATTGTCACCAAGACAGGGTTTTAGTTGAGGTTTTCGTAAAACAAAGGCAATCAACCAAATCTGTAGCACCGAGATATCCAACTAGGTGTCTGTGGGAAAGGTCAATAAATGTTTGTTAACCGCTCGTCTGTTTTGGGTCACTCAGTTGGGTCCTGGCTTGATGCACTCTGGGACAGATGGAGGCACAGTGACCGCTGCCGTGTGTGATGCCACTGCCTTTGAAGACAAACAGAATCCAACAACAGCTATGCGTATCTGTCTGGTGTGGAAAAACTCCACTGAActcagaaagagacacagagagtaaatTCCAAAACACTGTACCACTGGAAGGTTCTGGAATTTTGGAAAGAACTACAACCCCAAAACATACAAAACAGAGCTCTCTATGGATTTGTGTAATTGTGCGAAACATGAGATATTCGTACTCACAAGGTTCTTATAATTGTATTTGTACAGTACCACATCTAGTGGGGATTTACCTGTACTTAAAATACCATCCTTAGGGTGTGGCTATACAGCTGGGCAAGAAATACTGTGTTCTCCCTGGGCTGTCCCCTCCCATGTTGTGGATCTTATGAGTTCATTTGTCCCTATGCTCTTCCTGCCGTCGCAGATGGCCAGATGGCCTGACGTGGTGGGTGGTGGTCACACTGTACATGCAAAAAAATAACGACATACAAATGTCTCTCAGAACTAGTGCATAAATTGGTTGTTTACATTCGAGTGATACGGTACAATAGGGAAGTTATGTCAATGGAATAGACCAGCGATTTGCAAAAAAACAGCCATAAGAGGATCCAATACAAAGTAAGGCCTCGTAACACTTATTTCATTTTATTACCCCCTCACACATGCCCTTATTATTTCCAGGTTCGATCAGTGTGATAGTCATTTCATATCTAGATACCCAAATTCATTTGTACAAGCAGTGttacaaaaaaaatctatacaaCAATGAATTGTAAAACACAGTAGTTGTACAAACACAT
>TU1020992
AACACTTATTTCATTTTATTACCCCCTCACACATGCCCTTATTATTTCCAGGTTCGATCAGTGTGATAGTCATTTCATATCTAGATACCCAAATTCATTTGTACAAGCAGTGttacaaaaaaaatctatacaaCAATGAATTGTAAAACACAGTAGTTGTACAAACACATGACTTAATAGAACACAGGGTCAGTATGTCCGAAAACACTGCTATGaaccctctctcatctcttccaGTAGAACGTTAGTCAAAATGGACGACAAGCCCACCAGCAATCAGATACTATCTCTCCAGGCCTTCAACATAAAAGAAGTGAGTCAGAAAAGAAGGAAACAGCAAGGCATTGAGATATTCCCTTTCGCTGACACGCACaccacgtacgcacgcacaccacgcacgcacgcacacacaaagtaCAATAGAGAAAATAAACCCCAAAATAATTTCCATGTTAGTGTCTGTCTTACACAGTGGTCATTAGTCAACCAGCAAATCTTTAGCAAATGATGTAAACCAAAAAACGACAACTGATGTTAAACACTGCCTGTTAGGGTATCAATACTCAACCACAACACTGTAAACAATTGAACAAAGTGACAAAATTAAAGGAACATCCCTCAGATGACAAAAAGCTGTGTTGACAATACGGTTACGGCTACAGCATCATATGTCCAAAAGTATCCACCCGCCTGATTTAACACTTGATGTGACATCATCTTCATATGCACAGTTATCACAAACAGCACAGCCAGAATAGAAGATGACTCTAAATAATGCTTTTCAATGAAGAAATATTTAAGTGCATCCAGTTAGATGAGTTGAAAGAATGCCATAGCATCTTCACCTAGAAAACAACATCTGTGGTGTTGGTGTGGCTCATTTACAGGTGGAGGAGATGCATTGAAAGTCTAAATGCAACTGAAAGCACAAATAATATTCAAACTACAATATCAGGACTCATGAAAGAAACACTTTTATACTGGACCCATAAGtaatatattatactatatcatattatatatataagtATAAGCTTGCTGTGCCTGCTTGCtgtgcctgccccccccccccccccccccccccccagccccagATCCACTGTGGTTTCCTCTCAGCCCATATCTGACTAGATAATGGATACTGTCATACTGTGTAAGCGTCTCCTCATCTACTTTCTCATCTACTTCCTCTAACAAGAGGTCTATCGAGACGTAGTGTgcgatgactgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtggtgagatggagaggggacaTAGCCAGCGGGTGGGGGCGGAGGGGGTGAGGGGCTGTAGGGGCGGGACAGGGTGGCCACTGTGCCAGGGGCCAGGGTGGGAGGCCCTGTTTTGCTGTCAAAGGCTGTCTGGGCtgaggggatgaggggaggaggtgggggcGGGGCCGGAGGGATAAAGTG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618866.2 False 4458 mRNA 0.43 2 48503572 48508644
TU1020992 True 1446 lncRNA 0.44 2 48501662 48503741

Neighbor

gene id symbol gene type direction distance location
LOC110533134 NA coding downstream 70828 48415517 ~ 48432744 (-)
LOC110534153 LOC106602956 coding downstream 116512 48355041 ~ 48387060 (-)
LOC118936700 LOC106602960 coding downstream 170395 48330443 ~ 48333177 (-)
fhl1b fhl1 coding downstream 219512 48263311 ~ 48284060 (-)
LOC118936699 LOC106602963 coding downstream 240701 48260326 ~ 48262871 (-)
LOC110534163 atg4a coding upstream 27769 48536413 ~ 48544938 (-)
alg13 LOC106602945 coding upstream 117358 48626002 ~ 48634602 (-)
dacha dach2 coding upstream 158062 48666706 ~ 48795320 (-)
LOC110534171 LOC106602941 coding upstream 346208 48854852 ~ 48877877 (-)
LOC110534172 LOC106602940 coding upstream 372805 48881449 ~ 48907973 (-)
G897425 LOC106602952 non-coding downstream 2164 48498836 ~ 48501408 (-)
G897091 NA non-coding downstream 90376 48410972 ~ 48413196 (-)
G897071 NA non-coding downstream 112877 48390471 ~ 48390695 (-)
G897044 NA non-coding downstream 180512 48322848 ~ 48323060 (-)
G897011 NA non-coding downstream 267158 48236099 ~ 48236414 (-)
G897432 NA non-coding upstream 16623 48525267 ~ 48554785 (-)
G897448 NA non-coding upstream 40237 48548881 ~ 48648457 (-)
G897579 LOC106602942 non-coding upstream 309886 48818530 ~ 48828814 (-)
G897603 NA non-coding upstream 334713 48843357 ~ 48843664 (-)
G896841 NA other downstream 514496 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1270526 47203241 ~ 47234608 (-)
G894917 NA other downstream 2585233 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 2753241 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 3487525 45011329 ~ 45017446 (-)
G899409 NA other upstream 1647548 50156192 ~ 50156902 (-)
G899421 NA other upstream 1673752 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 1956823 50463950 ~ 50482534 (-)
G899727 NA other upstream 2212342 50720986 ~ 50721603 (-)

Expression


Co-expression Network