LOC110533135


Basic Information

Item Value
gene id LOC110533135
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48529819 ~ 48532846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110533135
ATGAGCTGGATGATCGAAGCAGGGCACCTTACCTTTGCCCGCACGGCGCCCTCGCCCACCTGGGCGCTGCTCAGCCTGAAATCGGTGGTGATCCTCGGCATGCACTCTGTGCTGATTGGAGGGCGCAACCAGAGGTTGCTGTTGGAGACTGCTCTGGACATGCATCTGACGGACGGTCCCTCGTGTTCATCCCCTACAACACGCTGCCCTACAGGGACGTGCACTACCGCGCCCTCATCAACCACGGCAAGCCGCGGAGAGCACGCAACGCTGTCTTGACCGCCACCATGAACTCAGAGGAAAACTCCTCCTACAAGACACATCAAGCTCCACCAGTATGTTCTTATATCCTTTTCCACATTCCCCCTCTGTTTGGTACCGTCTACAGCTCTATCCTCTTCATGGCTAACGCTATGCAGTGTGCGTGACAATGGGTAGTCGATGTCTGGCGCCGACCTGGTGCGCCACTCCAGAAATATGTTTTTCTATGGGTTCCGCCAGCGTGTCGGGGACCAATGGCTCCGGGGCCAGCTTACTGGAGTATGTGGTGCTGGACACAGATAGGCAGTCCTGGCCTCTGCTACCCACCCACCGTGTGGACCTAGACTCTGGGATGGTCAGGTCTCTGGGCTGCAGCACCCACTTCTCATCGGGGCTTCATTTGAATGTGTGTACATATACGTGGTCAGTTGCATGCATGGTCCCAATGCTCTCTTCCCGTCTGTTgaatatcatccagaaggtgagaaACCCTCCTCCACTATGCTGTGGTGTCACCAGACCACGTCCGCCCTGGAGTGTGTCCTTCTGATGAAACAGTGCTGGAACGAACAGGCAGACAGGCGCACTTTGATGACATCTTTGACCAGTTTAAGAACATTAACAAAAGGGAGGGAGACCCAACATTCTAGACTCTGTGCTGTGGATCCTGGAGCAGTACTCCTCTAGCACGGAGGAGCTGATCCAAGAGAGCTGGAGATAGAGCAACAGAAGACTGAGAAACTACTCACTCAGAAGCTGCCTCTATGActaacagacaacaacaacacacaccctcAAAGAAACTGTCTAGGATGTACACGTTTATCCAGTTTCAATTGAATAGGGCCCTAAGTGGTGTGTTTCAGTCAACGGGAAAGCGTAAGTTCTCTCAACTGTCACCAGAAAGCACAATGTGGCTAAAAGATGAAGCAATTCTAAGCTGCGTTTTACCCATCGCTTTATCCCACACTCCCAAAATAGGATTTTCCCTGCCATGTTGTTTGCAGCATACCAAATCCATTTGAGCCATAGCACAGCAAAGATCCTGG

Function

NR:

description
PREDICTED: retinal guanylyl cyclase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110533135 True 1310 mRNA 0.52 5 48529819 48532846

Neighbor

gene id symbol gene type direction distance location
LOC110534162 LOC106602950 coding upstream 5354 48513122 ~ 48524465 (+)
LOC110534159 LOC106602952 coding upstream 27169 48490263 ~ 48503743 (+)
LOC110534160 LOC106602953 coding upstream 41310 48484188 ~ 48488509 (+)
LOC110534157 LOC106602954 coding upstream 116602 48395880 ~ 48413217 (+)
LOC110534154 LOC106602958 coding upstream 175017 48337509 ~ 48354802 (+)
LOC110534164 t185l coding downstream 12372 48545218 ~ 48549943 (+)
LOC110534165 LOC106602949 coding downstream 17238 48550084 ~ 48551178 (+)
LOC118936701 NA coding downstream 34730 48567576 ~ 48568413 (+)
LOC110534166 LOC106602946 coding downstream 54440 48587286 ~ 48624401 (+)
chm LOC106602942 coding downstream 272179 48805025 ~ 48840284 (+)
G897121 NA non-coding upstream 5053 48524526 ~ 48524766 (+)
G896226 LOC106602963 non-coding upstream 281731 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 309170 48220368 ~ 48220649 (+)
G896210 NA non-coding upstream 311412 48218050 ~ 48218407 (+)
G897165 atg4a non-coding downstream 5696 48538542 ~ 48539153 (+)
G897207 NA non-coding downstream 63505 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 133930 48666776 ~ 48668107 (+)
LOC118936702 NA non-coding downstream 304870 48837072 ~ 48838821 (+)
G897336 NA non-coding downstream 347701 48880547 ~ 48880763 (+)
G896217 NA other upstream 294203 48235182 ~ 48235616 (+)
G896043 NA other upstream 618844 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1312748 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1324977 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1378270 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 143411 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 744856 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 897553 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1502144 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3917372 52450218 ~ 52475365 (+)

Expression


Co-expression Network