LOC110534164 (t185l)


Basic Information

Item Value
gene id LOC110534164
gene name t185l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48545218 ~ 48549943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618870.2
AACGTTCATGCTTTGTGCCAGAATGTGGCAGTGTAAGAGAGGATCACAATCGTAGTGTGTATGTATCACGGGtcaattgtgactgactgatctacaaataataatgagtatTTAGTTACGATGCAGTGttctttgtagatcagtcagtcggcAGTCTTCTGCAATGTCGAACATGCTCCATTATCATTGTAGCAAGCTGCTTTGACAACATTAGCTACATTGTTGCCAGTGGCAGTAGCCTTACTGTACATGACGCCCCTAGTGGCCTATCTCGCTAGCTAGCGTGAACCGCAATAGCAAGCagtttgataaaaaaaaacatcctttTGATACGTAATTTTATTGTTAATCCAAATAAGGATATAAAATATAGTCATGAATCTTCGGGGATTCTTTCAAGACTTCAATCCCAGTAAATTCCTCATCTATGCCTGTCTGTTGCTGTTCTCTGTTCTACTGTCCTTGCGTCTGGATGGCATCATCCATTGGAGCTATTGGGCTGTGTTTGCCCCCATTTGGCTATGGAAGCTAATGGTTATCATCGGTGCCTCAGTTGGCACAGGCGTCTGGTCCCATAACCCACAGTACAGGGCTGAGGGTGAAACCTGTGTGGAGTTCAAGGCCATGCTGATAGCAGTTGGGATCCACCTACTCCTGCTCACCTTTGAGGTTCTGGTGTGTGACCGTGTGGCGAGGGGCACCCACTTCTGGCTGCTGGTCTTCATGCCCCTCTTCTTCGTCTCGCCTGTCTCTGTTGCAGCATGTGTGTGGGGCTTCCGCCATGATCGCTCTCTAGAGTTGGAGATCTTGTGCTCGGTCAATATTCTCCAGTTTATCTTCATTGCCCTGCGACTGGATAAAATAATCAGTTGGCCATGGCTGGTCGTCTGTGTGCCACTGTGGATCCTCATGTCCTTCCTGTGCCTTGTGGTGCTCTACTACATGGTGTGGTCAGTGCTCTTTCTGCGGTCTATGGACGTCATCGCAGAGCAACGGCGTACTCACATCACCATGGCGATCAGCTGGATGACAATCGTTGTACCCTTGCTCACTTTTGAGATCCTGTTGGTCCATAAGTTGGATGGCCACTACAGCTCCAGCTATGTGTCTGTTTTCGTACCTCTCTGGGTGTCCCTGGTGACTCTGATGGCCACAACCTTTGGCCAGAAAGGAGGCAACCACTGGTGGTTTGGCATCCGAAAAGATTTCTGCCAGTTTCTTCTTGAGCTCTTTCCCTTCCTGCGGGAGTATGGGAACGTTTCTTATGACCTGCACCACGAGGACCCTGAGGTGTGCGAGGAGATGCCTGCACACGACCCGCCAAAAATAGCCCCGATGTTCAGCAAAAAAAATGGTGTGGTGATCACACAGAGCCCAGGGAAGTACTTTGTGCCTCCTCCAAAACTGTGCATTGACATGCCTGACTAAATTAAAGCTTTGCAACAACTGCTCTAGAGCTTTGATGGACTTCACATGCACCAGACAGCTGGATAAGTATTTTTTACAACCACATATCTATTTTTTATGGAAATGGAATGTTCTAGAAGGTTAAGTAGACACTTACCCCAAACGGCGAATCACTCCCTCAATATTGTTGTGCAGTATGGGTGCCCTGAAACATGaacaaaggctccaaaaacacccaaatatgGCCTTTTAGAAACAGCATATAACATTGCGGATAAAGTTTGGGATGATGCGATTTCATGTGTACATATCTAAATACCTGCGtcactatactgagagctttACTGTTTCGAAAGTAACCTATTTTGGTGTTTTTGGAGCATTCATGTTTTTTCTGGGCCCaacgaggatgaggaagtgatttGCTGTTTGtggtaagtttctcaaaaacaagtaaaatcacaaataaaaatgtagctggacccttctataacatgccatttacatcaGAAATAGAGATTTGATTGTAAAAAACAAACAACTTCTCCTTTAAAGAAGAGGCAGAAGAGCATAGCTTTCCATGTAAGTCACTCCTAGTGAGTGATGGGACCTGGTGGGACCGGAATttggacatgtttttttttctgaaaACAAAAATCCATGGCAGAGTATGTGGAACAAAAGGCACTCTTATATCAACGTGTGTTTTTCCATTGTATTGGCAGTGGAAATAATTAGTTCCTTTTCATTGATTttatgtgatatactgtatagtaCTTTCTATTTTCCTTGTGATGTTCTGGCCACCAACAAAATATCTCCAAAGCGTTCATCCTCTTTTATAATTCAGATATCTTTCACCTTATTCCAGTTGAAGATACATTTTGTTGTATGTTTGTCAAATTACCCAAATCctgatttattttttttgtatcaaAGCTCAAATACTACATGTTAGGATGACAACACAATCATGCTTATTAGTCTAACCTTTTTAAACCTAAGATTAGCTTGCTACTTGGGTATATTTGCTTTTGTttattaaattatttaacttctcTATTGTGAGGAACATTTGTTGTAATATAAtagcgtgtgtgtatatatagtattattCCCTAACACCCATTTTTGTATTTGGATGGTTTGGTTTTGATTTCATAGGGTATTTTCCTGAATTAAGACCCTGATCTATGTCCACTCAATTGTATTAAGGTTTACAACCTTGTTCCTCTAGTGGCCCTTTGCACTGAGTGTataaaaacattaggaacacctgctctttccacaacatagctttcacctggatagtCTATGATCCcttttattgatgtcacttgttaaatccactttaaatcagtgtagatgaaggggactggttaaataatgatttttaagccttgagacatgaattgtttgtgtgccattcaaagggtgaatgggcaatacaaaatatctaagtgcctttgaacggggtatgttagtaggtgccaatattaggaaggtgttcctaatgtttggtatagtcagtGTATATGGCAGTATGACAGTCATTGTAGTTGGCTTTTGCTGTTACAATAATGTCAGATTCAGGGTGCACAACTTTGCCTCAAGGTTCCTAGTAGTGTATTCTAGTTTTCAATTAATCTTGAGTATTCTGGGTAAACAGCCTGTTTGCGTCTTCTACCTTGCCAGGTCTACATTGGGTAATGTAAGGGAGAAAACCCGCAGTGCCGCTTCTCTATTATTATATCTGTGAAAAATtctttgtttgtgaaattgtgacTCTCCTTCATACAAAATGTTCTCCCCACCATCCCATTGAACTTCTAATCGATCCCCTCATGTTTTGTTCGTTTTGTCTATGTTCTGTGACCACTCTCAGCTGGCCTGAGAGATGAGCATTACTcatttgaaaacatgtttttgaccGAGAACGGACCAATGTTATACTTTTCCCCTCTATTGTACCTTGTTTCTAACCTTTCACCATACACATTCTGTTGCAATATAGCTGTTTTTCTTTCTGCTAGCAAGCACTTCAGTACGTGTTAAATGATGATTAACATTTAAATCACTGTTAGTTATCTGGTCGTCATTTTGTTGACTTGTCAAATGCATGAACATTGATTTCAAATTGAAATAATACTTTT

Function

NR:

description
transmembrane protein 185-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618870.2 True 3560 mRNA 0.41 7 48545218 48549943

Neighbor

gene id symbol gene type direction distance location
LOC110533135 NA coding upstream 12372 48529819 ~ 48532846 (+)
LOC110534162 LOC106602950 coding upstream 20753 48513122 ~ 48524465 (+)
LOC110534159 LOC106602952 coding upstream 42568 48490263 ~ 48503743 (+)
LOC110534160 LOC106602953 coding upstream 56709 48484188 ~ 48488509 (+)
LOC110534157 LOC106602954 coding upstream 132001 48395880 ~ 48413217 (+)
LOC110534165 LOC106602949 coding downstream 141 48550084 ~ 48551178 (+)
LOC118936701 NA coding downstream 17633 48567576 ~ 48568413 (+)
LOC110534166 LOC106602946 coding downstream 37343 48587286 ~ 48624401 (+)
chm LOC106602942 coding downstream 255082 48805025 ~ 48840284 (+)
LOC118936702 NA coding downstream 287129 48837072 ~ 48838821 (+)
G897165 atg4a non-coding upstream 6065 48538542 ~ 48539153 (+)
G897121 NA non-coding upstream 20452 48524526 ~ 48524766 (+)
G896226 LOC106602963 non-coding upstream 297130 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 324569 48220368 ~ 48220649 (+)
G897207 NA non-coding downstream 46408 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 116833 48666776 ~ 48668107 (+)
G897336 NA non-coding downstream 330604 48880547 ~ 48880763 (+)
G897337 NA non-coding downstream 330921 48880864 ~ 48881140 (+)
G896217 NA other upstream 309602 48235182 ~ 48235616 (+)
G896043 NA other upstream 634243 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1328147 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1340376 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1393669 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 126314 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 727759 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 880456 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1485047 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3900275 52450218 ~ 52475365 (+)

Expression


Co-expression Network