LOC110534165 (LOC106602949)


Basic Information

Item Value
gene id LOC110534165
gene name LOC106602949
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48550084 ~ 48551178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618871.2
TTATCAAGACGTGCTTGTTAACAGGACAAACAGGAAGTGCGTAAGGTTTGGGAGAGTAGTTGAAAAGTATTGTGGCTAATGTAAAAAATTACCTTAACGGTGCGTCGAGGAATTGCCGAGTAAGTTGCCTTTGTTGTAACGAGGTGGTCTATATAAATAGAAGTCAACCATTGCTCCTTTTATAATTACAGTCGGATACATGTAGCCAGCCAGATTTTACGCGTCACAGAGACTACAAAGGCGTTGATTGATTGCGTGATGATGTGTGCAACAGCTCTTTCTTCTTACTAGATCATTATTTTAGGATTGGTTTAGAGTGATAGAGTAGCATAGCACCTGGTTGCAACGTATTCGCGACGTGGAGTGAGGATGACATTACAAGTGGGTTGCCTATCATTCAAGCAGCCGTATGCAGGATTAGTACTGGACGGTGTAAAAAGTATTGAGACACGTTGGCGCCCTCTGCTATCCACAATGGAAAACTGCACTCTAGCTATTCATATTGCGCAGAAGGACTGGGAGGCCGACCAGTGGAGAGACATCCTCACCCATACACTGGGAATGAGCCACATGCAAATAGAGGAACTTCTAGCATCCGGAGACAGATTTGGCCGTGGAGTCGTAGCAGGCTTGGTGGAAGTGGGGGAGACCTGGTGCTGCTCTGACAATGTGCCAGAGAAGGATCTGAGGGAGCTGGAGAAGGCAGCATTGCACACTGGGCTCACAGAGAAACACCTCACACAGCTGTCAAACCCACGCTGGCTCAAGGAACCCCTTTATGCCAGAGGTCACAAAGACATATGGACAGTAGATATCCCAGTGCAATTACTGCCATCTGCGTAGTTGTAATAAAATAATGTATACTCATTTTGTACTGACAGGATCATCTATCAAGTTAGGGAGGCAATATATTTGTAGACTACTCGCATTCGCTTTAAGGTGCAATAAATGACCAATGGACCAAA

Function

NR:

description
protein CXorf40A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618871.2 True 965 mRNA 0.45 2 48550084 48551178

Neighbor

gene id symbol gene type direction distance location
LOC110534164 t185l coding upstream 141 48545218 ~ 48549943 (+)
LOC110533135 NA coding upstream 17238 48529819 ~ 48532846 (+)
LOC110534162 LOC106602950 coding upstream 25619 48513122 ~ 48524465 (+)
LOC110534159 LOC106602952 coding upstream 47434 48490263 ~ 48503743 (+)
LOC110534160 LOC106602953 coding upstream 61575 48484188 ~ 48488509 (+)
LOC118936701 NA coding downstream 16398 48567576 ~ 48568413 (+)
LOC110534166 LOC106602946 coding downstream 36108 48587286 ~ 48624401 (+)
chm LOC106602942 coding downstream 253847 48805025 ~ 48840284 (+)
LOC118936702 NA coding downstream 285894 48837072 ~ 48838821 (+)
LOC110534170 frmd7 coding downstream 289426 48840604 ~ 48855932 (+)
G897165 atg4a non-coding upstream 10931 48538542 ~ 48539153 (+)
G897121 NA non-coding upstream 25318 48524526 ~ 48524766 (+)
G896226 LOC106602963 non-coding upstream 301996 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 329435 48220368 ~ 48220649 (+)
G897207 NA non-coding downstream 45173 48596351 ~ 48621973 (+)
G897237 NA non-coding downstream 115598 48666776 ~ 48668107 (+)
G897336 NA non-coding downstream 329369 48880547 ~ 48880763 (+)
G897337 NA non-coding downstream 329686 48880864 ~ 48881140 (+)
G896217 NA other upstream 314468 48235182 ~ 48235616 (+)
G896043 NA other upstream 639109 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1333013 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1345242 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1398535 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 125079 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 726524 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 879221 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1483812 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3899040 52450218 ~ 52475365 (+)

Expression


Co-expression Network