LOC110534166 (LOC106602946)


Basic Information

Item Value
gene id LOC110534166
gene name LOC106602946
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48587286 ~ 48624401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618872.2
GAGGAGCTGGCAGTGTTGACAAcgcagcgagagacagagaggggttgGAGAAGGGCACCCGCCGCCGCCACCGTGACTACACTCCGTTCGACACCATGACAACCGTAGCAAATGCACGGCGAGCCCCCGGCCCTGCTGCCCCACCAatcagaggggagagagtggcgCGCGGCAAGCTGTGAGGGGAGAGACGCAGCACAGGATAGCAGAGCAGAGGTAGAACACCCCAGACACTCCTACTTACACAGAGAGAAGATACCCAGTCATTTCTCTGCCTCTTACCTGAACACTGGATGCCAGAGAGAACCTCTTGGATAATCAGCTTTGCTCTTGTTCTTTTCCCCCACAGTGGGGAGGAGTGTAAGGATGGATATACTGATTCTAACAGGACCACCCAATCACTATTACAACCTAGGAGTTACCAgactggtggggggggggaaacGCAAAGAAAAAGACCATGTCGAAAATCTGCATCAGATTCCAATTCCCCAGTAGGCCGTGAGTGACGCCGACCGTGTGCACATGATGAATCCCATGGCCCAGCTGTACTACAAGAAGGCGAGCTACTCGCCGTACCGCGACCGCATCCCGCTGCAGATCGTGCGGGCGGAAGCGGAGCTGTCAGCGGAGGAGCGGGCGTACCTGACGGCGGTTGAGAAGGGTGACTATGCCGGGGTGAAGCTGGCCCTGCAGGAGGCGGAGATCTACTACAACATCAACGTGAACTGCCTGGACCCGCTGGGGCGCAGCGCGCTGCTCATTGCCATCGAGAACGAGAACCTGGAGGTGATGGAGCTGCTGCTCAACCACGGCGTGCACGTGGGCGACGCACTGCTCTACGCCATCCGCAAGGAGGTGGTGGGCGCCGTGGAGCTGCTGCTGTCCCATCGCAGGTCCAGCAGAGAGAAACAGGTGCCCAACCTGATGATGGATACCCAGTTCTCAGAGTTTACCCCTGACATCACACCCATCATGCTGGCAGCTCACACCAACAACTATGAGATCATCAAGCTGCTGGTCCAGCGCAAGGTGACCATCCCCCGGCCCCACCAGATCCGCTGCGACTGCGTGGCCTGTGTGTCCAGCTCCGAGGTGGACAGCCTGCGTCACTCACGCTCCCGCCTCAACGTCTACAAGACCCTGGCCAGCCCATCCCTCATCGCCCTGTCCAGCGAAGACCCCATCCTGACTGCCTTCCGCCTGGGCTGGGAGCTGAAGGAGCTAAGCAAGGTGGAGAACGAGTTCCGTCAGGAGTACGAGGAGCTGTCCCAGCAGTGTAAGCTGTTTGCCAAGGACCTGCTGGACCAGGCCAGGAGCTCTAGAGAGCTGGAGACCATCCTCAACCACCGCGATGACCTCAGTGATGAGCTAGACCCACAGGACTGCCGTGACCTGGCCAAGCTCAAACTAGCTATCAAGTACCACCAGAAAGAGtTTGTGTCCCAGCCAAACTGTCAGCAGCTTCTGGCCACCCTGTGGTACGACGGTTTCCCCGGGTGGCGCAGACGCCACTGGGCGGTCAAGCTGGTCACCTGCTTCACCATCGGCCTGCTCTTCCCCATCTTCTCCCTGGTCTACCTGCTGGCTCCTAGGAGTGCCCTGGGCCTCTTCATCAAGAAGCCCTTCATCAAGTTCATCTGCCACACAGCCTCCTACCTGACttttcttttcctcctcctcctggcctCCCAGCACATTGTGAGAACAGACCTGCACGTCCAGGGCCCGCCACCCACCGTGGTGGAGTGGATGATCCTTCCCTGGGTGCTGGGCTTCATCTGGGCTGAGATAAAGGAGATGTGGGACGGCGGCTTCACTGAGTACGTCCATGACTGGTGGAACCTGATGGACTTTGCCATGAACTCTCTCTACTTGGCCACCATCTCACTCAAAATAGTTGCTTACTTCAAGTACAACAGCTCTCGGCCGCGGGAGGAGTGGGAGATGTGGCACCCGACGCTGATCGCCGAGGGCCTGTTTGCTATCGCCAACATCTTCAGCTCCCTGCGCCTCATCTCCCTGTTCACAGCCAACTCCCACCTGGGGCCTCTGCAGATCTCCCTGGGACGCATGTTGCTGGACATCCTCAAGTTCCTCTTCATCTACTGCCTGGTGCTGCTGGCCTTCGCCAACGGGCTCAACCAGCTGTACTTCTACTACGAGACCAAGGCCTCGGACGAGCCCAACAACTGCAAGGGCATCCGCTGTGAGAAGCAGAACAACGCCTTCTCTACGCTGTTTGAGACGTTACAGTCCCTGTTCTGGTCGATATTCGGCCTGCTCAACCTGTACGTGACCAACGTGAAGGCACGCCATGAGTTCACAGAGTTTGTGGGAGCCACCATGTTCGGTACCTACAACGTTATCTCCCTGGTGGTGCTGCTCAACATGCTCATCGCCATGATGAACAACTCCTATCAGCTCATCGCTGATCATGCGGACATTGAATGGAAGTTTGCCCGCACCAAGCTGTGGATGAGTTATTTTGACGAGGGAGGAACTCTCCCTCCGCCCTTCAACATCGTCCCCAGCCCCAAGTCAGTGTGGTACCTGTGTGTGTGGACGCACAACCGCCTGTGTGGACGGGACCATCCCAGTCCTGACAACCCGAGGAAACAGGAGAACTTAAAGGAGTTCACGGAGCGGCATGCTGACAACCTGATTCAGAACCAGCATTATCAGGAGGTGATCAGGAACCTGGTGAAGAGGTATGTAGCAGCCATGATCCGCAGTGCTAAGACAGACGAGGGTCTGACAGAGGAGAATTTTAAGGAGCTCAAGCAGGACATCTCCAGTTTCCGCTACGAGGTGTTAGACCTGTTGGGGGACAGGAAGCCTCCGCGGAGGACCTACTCATCCAGCAGTGAGGCTACCCAGCAGGACGAGGCCAACGAGGAAGAAGGGGCTGGACAGGCCCAGGGTCAGTCCAGGGACCAAGGGGCTAAGGGGGTATCCTTCAGCACGTCTATCGCTGAGAGGAAGAGCAAGGACTCTGGGTTCAGCGTCTCCGCCCTCTTTAAGTCCATGTCAGGGGCAGAGGGGGCAGTGGACAACAAACCAAAGTGCAACGGGCTCAggttctcttcctcccccccgcCCACTGCTGCGTTAACCCGCAGTAGTGGCCGGCTGCAACGCTTCTCCAAGTCCAAAAGAGACTCCATCAGGCGGCTGGGCCTGCTCTTCTCCCGCATGAACGGACACGTCCCAGAGCCCATGTCCCCTCCTCCCAGGATGCACCAGCCCACCTACAGCATCTCAGGCGGTCTTCTTCGGCAGCCCACAACCTGGCCggacatccagatcccccccaaTCCCCCGGTTACACACAGCCTGTTCCACCTGGGGGTGAACCTGAACGAGCTACCACATGCCCCTCCCCAGGCCCTGCCATTGGGGTCACCCCAGCAGGCTAACGGAAGTGACAGTCTTCTCCTGCGACCCGCGGGCCACTCCTTACCACCGCCAGCCCACTCCCTGCCACCCCTGCACTGTGCTTCCAGCATCACGGCCTCCAGCTCCCGGGCTGTCCTCTTGGGCTCTAGTGAGGACATGTTTGAGGGCTGGATAGGACCTTGTGACGAGCTGGACTCCTCTGAGGGGGGGGCTGAGCAGGAGGactccatcacaacacagctttAGAGATCCCTCCCCCCAGGAATAATGACAGTATGTTCAGGTCACTCTGCTGAAAGGACAGAAAGGATAAGTGGCTGACccaattatacaaaacccaggaCTCATTTTCACAAAGATATCATAGCAAAGTAGGAAGATTCTAAACATATAATGAAAAAAAAGAAGCTTTTATCTATTGCAATATAACTACGTTTGCATACTGCCACCTACCTGTGATCCTTAGATCATTGGGTCTGTAAGCTCACCATCCTCTCAACATTTGTTTTCATACAGTTCAGACCCAGTTATTTATATTTTACTCATCAAAATATCACTGAGATTAAAATGGGTTCATATACACAGCCGAGGTATCACCGTTGTCCAAACTTCTACTCTCTTACACATATGTTTAATCTCATTGCAAGTTTGTCTTTTACCAGACTGTTTTGCAGTGTTGTTCCATATGCACATGTTTTCCTCACGTGCCAAATTTCCCCTACAGGGTGTTCTGTTTGGTAAGTCAAATAACCTAAACATGAACGGTTATTATCATGGTAGACAAGGTCATTTATTTCAGGCTTGCAGGTTGAATCTTTACAAGTTGTTTCTGGACAATTAACTAATAATACTGTTCTCTTTTTTTCTATGAAAGTTgtatttttctatattttcttgGAAATAAGACACTACCAGTTTTGGGCTATTGAGACAGGTAATGCACGATATTAGCAGAGTAACATTTATCCATGTTTTATGTTTACTCTTAATCTAATTTATTTTTCAAGATGGCTGTGAATTATAATACTCAAGATCAAGTTGAGAGAACCTACGAAAACAATGTTTAATTGCTGTCAAAAACAAGCTTGTatacaaatacatttatttgataATGCGAATGATCTAAAATACATTACATTTGACTGATTCTTAGAACTAGGATTCCAAGATTGGGCCATGTAATATGATGGTGTCTGTGGTCACACAAAACGCCACTGAAATGTCCAAAAATAGCTATACTCTGGGCAATTGTGACAGCGCAATGCATTCGCTAGTTGCAGTATTCATGGTTTACCTTAATGTGCCGTCTCATCATTTAAAAATTAACACTTTTACGAGTTCGGATTCTTGTCATCGATAAAAGTTTGGTATTTTGGCGTGGACTGTGTTCGGGGAAGCCAGCCCCCGGTCATGGATCCggacctgatcaactctatgcgacgGAGATGTGTccactatttgcctcatgcagtgggtcacaccagatactaactggttttctgatccacgcccctaccttttttaaagggATCTATccctgaccaacagatgcatatctg

Function

NR:

description
short transient receptor potential channel 5-like

GO: NA

KEGG:

id description
K04968 TRPC5; transient receptor potential cation channel subfamily C member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618872.2 True 4958 mRNA 0.53 12 48587286 48624401

Neighbor

gene id symbol gene type direction distance location
LOC118936701 NA coding upstream 18873 48567576 ~ 48568413 (+)
LOC110534165 LOC106602949 coding upstream 36108 48550084 ~ 48551178 (+)
LOC110534164 t185l coding upstream 37343 48545218 ~ 48549943 (+)
LOC110533135 NA coding upstream 54440 48529819 ~ 48532846 (+)
LOC110534162 LOC106602950 coding upstream 62821 48513122 ~ 48524465 (+)
chm LOC106602942 coding downstream 180624 48805025 ~ 48840284 (+)
LOC118936702 NA coding downstream 212671 48837072 ~ 48838821 (+)
LOC110534170 frmd7 coding downstream 216203 48840604 ~ 48855932 (+)
rtn3 rtn3 coding downstream 286985 48911386 ~ 48927265 (+)
LOC110534173 LOC106602939 coding downstream 321262 48945663 ~ 48955133 (+)
G897165 atg4a non-coding upstream 48133 48538542 ~ 48539153 (+)
G897121 NA non-coding upstream 62520 48524526 ~ 48524766 (+)
LOC110534159 LOC106602952 non-coding upstream 83543 48490263 ~ 48503743 (+)
G896226 LOC106602963 non-coding upstream 339198 48247229 ~ 48248088 (+)
G896212 NA non-coding upstream 366637 48220368 ~ 48220649 (+)
G897237 NA non-coding downstream 42375 48666776 ~ 48668107 (+)
G897336 NA non-coding downstream 256146 48880547 ~ 48880763 (+)
G897337 NA non-coding downstream 256463 48880864 ~ 48881140 (+)
G897362 NA non-coding downstream 313237 48937638 ~ 48964172 (+)
G896217 NA other upstream 351670 48235182 ~ 48235616 (+)
G896043 NA other upstream 676311 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1370215 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1382444 47202925 ~ 47204842 (+)
LOC110511048 LOC106603033 other upstream 1435737 47132135 ~ 47151549 (+)
G897244 dach2 other downstream 51856 48676257 ~ 48677065 (+)
LOC110534184 LOC106563731 other downstream 653301 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 805998 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1410589 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3825817 52450218 ~ 52475365 (+)

Expression


Co-expression Network