chm (LOC106602942)


Basic Information

Item Value
gene id chm
gene name LOC106602942
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48805025 ~ 48840284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933288.1
tgtgtgtacacacgcgCACGTACATGTGACGTCACAGCTATTCTGTCACATGATACAGTGCTCACCATGGCGGCTGACAACCTACCATCCGAATTTGATGTTATCATACTCGGGACAGGCCTGTCTGAGTCTGTTATTGCAGCGGCATGCTCCCGTGTTGGACAGAGGGTCTTGCACGTTGACAGGAGAAACTACTATGCTGGAAACTGGGCCAGTTTCACATTCAATGGACTGCTGTCCTGGATCGAGGAGTACAAACAGGCTGGCCAGAGTGAGGAGGCTATACGGGAGGACTGGAAGGAGAagctggaggagggagaggaggcccTGGCGCTCAGCTCTATGGACACATCCATCTCCAACCTGGAAGTATTCTGCTACGCCAGTGAGgaacctgaggaggaggaggtgaatgAGGCTGCGGCTGCAGCCTGGTCCGTCCCTCAAACACCAGACtcagagggggaggtagagaggtgtCTGCTCGAGAGCAGTTCTGTGGAGGAGGAAGAGCCAGTGGTGGCCGGTGATGAGGCGTCTCCAGCCTCTAGACCTGATGCTGGGGCAGAGCAGACCCAACCggaggggcaggagagagagatgccCAGCCAGACAGAGGAGACTCAGGGGGAGGCGCAGCAGGCCAGCCCCTCTCCAGCTGAGAGGCAACCAGAGCCCAAGAAAAAGATCACCTATACCAAGATTGTTAAGGAGGGACGGAGGTTCAACATTGACCTTGTGTCTAAGCTTATGTTCTCTCGTGGCTCACTGGTGGACCTCCTCATCAAGTCCAACGTCAGCCGATACGCAGAGTTTAAAAACGTTACCCGCATCCTCACCTACCGTAACGGGAAGGTGGAACagGTGCCCTGCTCCAGGGCTGATGTTTTTGGCAGCAAGCAGCTGACAGTGGTGGAGAAAAGGATGCTGATGAAGTTCCTCACCTTTTGCCTGGACTTTGAGCAGCACCAAGAGGAATACCAGGactTCTCGGAGCATTCCTTCTGGGACTTCCTGCAGACCAAGAAGCTGACGGAGAACCTGCAGCATTTCATCCTTCACTCCATTGCCATGGTGATCCCGGAGGTGGGCACGGTGGAAGGCCTGAGAGCCACGCAGCACTTCCTGCGTTGTCTGGGGCGCTACGGCAACACGCCTTTCCTGTTCCCCCTCTACGGCCTGGGGGAGATCCCTCAGTGCTTCTGCAGGATGTGTGCTGTCTTTGGAGGGATCTATTGTCTTCGCCACTCAGTTCAGTGTCTGGTTCTGGACAAGGAGTCCGGCAAGTGCAAAGCTGTGATTGACACTCATGGTCAGAGAATTAGCTGCAGTCACTTTGTGGTGGAGGATGGCTACATCGGGGCAGACCAGAGGAAGAACACGGATTCCAGGCAGATATCCAGAGCGGTCCTCATCACAGACCGGTCAATTCTGCCATCCGATTCTGAACAGCAGATCTCCCTGGTCACTGTGCCTCCCGTGGAGCCTGGTGGTCCCCTGGTCCGTATCATAGAGCTCTGCTCTTCCACCATGACCTGCATGCTAGACACCTATCTGGTGCACCTGACATGTTCCTCTGCCTCTGGCTCCGCCCAAGAAGACCTAGCTCCTGTGGTGTCCAGGCTCTTCCACACACCAGCTAGTCCTGGAGAGGAACCTGCAGAAGgagaggaggagagcaggggaCCGACGGTGCTGTGGGCCCTGTACTTCAACATGAGGGACACTTCTGCTGTGGACAGGAGCAGTTATGACCTGCCCAGTAACGTACATGTGTGTGCCAGCCCTGATACCGCCCTGGGCAGTGACCACTCCATCAAACTGgccgaGGCAGTGTTCCGCCAGCTTCTCCCTGACGAGGAGTTCTGCCCCCCGGCCCCCAACCCCGAGGACATCATCTACGATGGGGATGGGCCCCAGGGGGAGGGCCCGGGCTTTGAGGAGGCTGCACCAGCAGAGGGTGCTGGTGCCCAAGGAGGAGAGAGCACTGGGAGGCAGGAGGGAAAGGAAGCAGTGGGAGCAACGAAGGGGGCGGGAGACTCCGTAACACCGGAAACTGGGGCTGGGGATGAGCCGAGCCCCACCAGCGATGAATAGCCCCACGCACCCCCCTCCGTGTACAAACAGACTGCTGCCTTCTGCCTCAGAGTCCTGGCATGCACagcagtcagtcagcactccTCTGAAGGCATAGCTGGACTCTGTGGTCTTGGTAACCACATAGCGTTCTCATCCCAGAAAGCCTTAGAGGGATCATCTTCACCATCCTTGATGTGGTCACCTGCAGagacatttatatatatacatatatacagtatttacattgATATGCACAGTATATTAATGGAGTCATTTCTTTACTGGGCACTATATAGCAGCCTGCTCACTGTATTTTTCCTCTCACCTGAGGTTGATGTAAAGGTTCGtctgagtgtgtggggggggggctgttctTTCTAAAAGCCGTTGCATTGTGATGTGTGTTCTTAATCAGGGTCTCTGGCGTAGAGCCCAAAGAAATGGTTGCCTTTTTCCTTTTTGCACTCACGTTAAGAGTTTCGCTCAGCCAGAGAGGACGTGATGCTGTTTTGTTTCCCGCCTCTTGTGTATGTCTGGAATGGGTTTTCTGGGCGTTTTTAAGGCCTTACAGGAAGTATGAGACGCCTCATCCTCAATAAGAACCCCCCGAAACACTGGGCAGGGATAGCCTCGCAACGCAACTTGCATGTTTTCACACACACTGCTGCGCCATCCAATTGTACTCGAACCCCACGTCTCTTTTAATGTGCTTAAGTATTTCAACTCTGTTCTCTCATGTGTATTGTCGCTGTCACTATCCTTTTTAAAAGGTTGACAACCATTAAAGTGCTACCGAACAACG
>XM_036933289.1
tgtgtgtacacacgcgCACGTACATGTGACGTCACAGCTATTCTGTCACATGATACAGTGCTCACCATGGCGGCTGACAACCTACCATCCGAATTTGATGTTATCATACTCGGGACAGGCCTGTCTGAGTCTGTTATTGCAGCGGCATGCTCCCGTGTTGGACAGAGGGTCTTGCACGTTGACAGGAGAAACTACTATGCTGGAAACTGGGCCAGTTTCACATTCAATGGACTGCTGTCCTGGATCGAGGAGTACAAAGCTGGCCAGAGTGAGGAGGCTATACGGGAGGACTGGAAGGAGAagctggaggagggagaggaggcccTGGCGCTCAGCTCTATGGACACATCCATCTCCAACCTGGAAGTATTCTGCTACGCCAGTGAGgaacctgaggaggaggaggtgaatgAGGCTGCGGCTGCAGCCTGGTCCGTCCCTCAAACACCAGACtcagagggggaggtagagaggtgtCTGCTCGAGAGCAGTTCTGTGGAGGAGGAAGAGCCAGTGGTGGCCGGTGATGAGGCGTCTCCAGCCTCTAGACCTGATGCTGGGGCAGAGCAGACCCAACCggaggggcaggagagagagatgccCAGCCAGACAGAGGAGACTCAGGGGGAGGCGCAGCAGGCCAGCCCCTCTCCAGCTGAGAGGCAACCAGAGCCCAAGAAAAAGATCACCTATACCAAGATTGTTAAGGAGGGACGGAGGTTCAACATTGACCTTGTGTCTAAGCTTATGTTCTCTCGTGGCTCACTGGTGGACCTCCTCATCAAGTCCAACGTCAGCCGATACGCAGAGTTTAAAAACGTTACCCGCATCCTCACCTACCGTAACGGGAAGGTGGAACagGTGCCCTGCTCCAGGGCTGATGTTTTTGGCAGCAAGCAGCTGACAGTGGTGGAGAAAAGGATGCTGATGAAGTTCCTCACCTTTTGCCTGGACTTTGAGCAGCACCAAGAGGAATACCAGGactTCTCGGAGCATTCCTTCTGGGACTTCCTGCAGACCAAGAAGCTGACGGAGAACCTGCAGCATTTCATCCTTCACTCCATTGCCATGGTGATCCCGGAGGTGGGCACGGTGGAAGGCCTGAGAGCCACGCAGCACTTCCTGCGTTGTCTGGGGCGCTACGGCAACACGCCTTTCCTGTTCCCCCTCTACGGCCTGGGGGAGATCCCTCAGTGCTTCTGCAGGATGTGTGCTGTCTTTGGAGGGATCTATTGTCTTCGCCACTCAGTTCAGTGTCTGGTTCTGGACAAGGAGTCCGGCAAGTGCAAAGCTGTGATTGACACTCATGGTCAGAGAATTAGCTGCAGTCACTTTGTGGTGGAGGATGGCTACATCGGGGCAGACCAGAGGAAGAACACGGATTCCAGGCAGATATCCAGAGCGGTCCTCATCACAGACCGGTCAATTCTGCCATCCGATTCTGAACAGCAGATCTCCCTGGTCACTGTGCCTCCCGTGGAGCCTGGTGGTCCCCTGGTCCGTATCATAGAGCTCTGCTCTTCCACCATGACCTGCATGCTAGACACCTATCTGGTGCACCTGACATGTTCCTCTGCCTCTGGCTCCGCCCAAGAAGACCTAGCTCCTGTGGTGTCCAGGCTCTTCCACACACCAGCTAGTCCTGGAGAGGAACCTGCAGAAGgagaggaggagagcaggggaCCGACGGTGCTGTGGGCCCTGTACTTCAACATGAGGGACACTTCTGCTGTGGACAGGAGCAGTTATGACCTGCCCAGTAACGTACATGTGTGTGCCAGCCCTGATACCGCCCTGGGCAGTGACCACTCCATCAAACTGgccgaGGCAGTGTTCCGCCAGCTTCTCCCTGACGAGGAGTTCTGCCCCCCGGCCCCCAACCCCGAGGACATCATCTACGATGGGGATGGGCCCCAGGGGGAGGGCCCGGGCTTTGAGGAGGCTGCACCAGCAGAGGGTGCTGGTGCCCAAGGAGGAGAGAGCACTGGGAGGCAGGAGGGAAAGGAAGCAGTGGGAGCAACGAAGGGGGCGGGAGACTCCGTAACACCGGAAACTGGGGCTGGGGATGAGCCGAGCCCCACCAGCGATGAATAGCCCCACGCACCCCCCTCCGTGTACAAACAGACTGCTGCCTTCTGCCTCAGAGTCCTGGCATGCACagcagtcagtcagcactccTCTGAAGGCATAGCTGGACTCTGTGGTCTTGGTAACCACATAGCGTTCTCATCCCAGAAAGCCTTAGAGGGATCATCTTCACCATCCTTGATGTGGTCACCTGCAGagacatttatatatatacatatatacagtatttacattgATATGCACAGTATATTAATGGAGTCATTTCTTTACTGGGCACTATATAGCAGCCTGCTCACTGTATTTTTCCTCTCACCTGAGGTTGATGTAAAGGTTCGtctgagtgtgtggggggggggctgttctTTCTAAAAGCCGTTGCATTGTGATGTGTGTTCTTAATCAGGGTCTCTGGCGTAGAGCCCAAAGAAATGGTTGCCTTTTTCCTTTTTGCACTCACGTTAAGAGTTTCGCTCAGCCAGAGAGGACGTGATGCTGTTTTGTTTCCCGCCTCTTGTGTATGTCTGGAATGGGTTTTCTGGGCGTTTTTAAGGCCTTACAGGAAGTATGAGACGCCTCATCCTCAATAAGAACCCCCCGAAACACTGGGCAGGGATAGCCTCGCAACGCAACTTGCATGTTTTCACACACACTGCTGCGCCATCCAATTGTACTCGAACCCCACGTCTCTTTTAATGTGCTTAAGTATTTCAACTCTGTTCTCTCATGTGTATTGTCGCTGTCACTATCCTTTTTAAAAGGTTGACAACCATTAAAGTGCTACCGAACAACG

Function

NR:

description
rab proteins geranylgeranyltransferase component A 2-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0048798 swim bladder inflation biological_process
GO:0050935 iridophore differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005968 Rab-protein geranylgeranyltransferase complex cellular_component
GO:0004663 Rab geranylgeranyltransferase activity molecular_function

KEGG:

id description
K23460 CHM, CHML; Rab proteins geranylgeranyltransferase component A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933288.1 False 2881 mRNA 0.54 15 48805025 48840284
XM_036933289.1 True 2878 mRNA 0.54 15 48805025 48840284

Neighbor

gene id symbol gene type direction distance location
LOC110534166 LOC106602946 coding upstream 180624 48587286 ~ 48624401 (+)
LOC118936701 NA coding upstream 236612 48567576 ~ 48568413 (+)
LOC110534165 LOC106602949 coding upstream 253847 48550084 ~ 48551178 (+)
LOC110534164 t185l coding upstream 255082 48545218 ~ 48549943 (+)
LOC110533135 NA coding upstream 272179 48529819 ~ 48532846 (+)
LOC110534170 frmd7 coding downstream 320 48840604 ~ 48855932 (+)
rtn3 rtn3 coding downstream 71102 48911386 ~ 48927265 (+)
LOC110534173 LOC106602939 coding downstream 105379 48945663 ~ 48955133 (+)
LOC110534174 LOC106602938 coding downstream 139248 48979532 ~ 48980528 (+)
LOC110534176 LOC106602937 coding downstream 148055 48988339 ~ 48993933 (+)
G897237 NA non-coding upstream 136918 48666776 ~ 48668107 (+)
G897207 NA non-coding upstream 183052 48596351 ~ 48621973 (+)
G897165 atg4a non-coding upstream 265872 48538542 ~ 48539153 (+)
G897121 NA non-coding upstream 280259 48524526 ~ 48524766 (+)
LOC110534159 LOC106602952 non-coding upstream 301282 48490263 ~ 48503743 (+)
G897336 NA non-coding downstream 40263 48880547 ~ 48880763 (+)
G897337 NA non-coding downstream 40580 48880864 ~ 48881140 (+)
G897362 NA non-coding downstream 97354 48937638 ~ 48964172 (+)
G897689 NA non-coding downstream 159868 49000152 ~ 49000627 (+)
G897690 NA non-coding downstream 162746 49003030 ~ 49003245 (+)
G897244 dach2 other upstream 127960 48676257 ~ 48677065 (+)
G896217 NA other upstream 569409 48235182 ~ 48235616 (+)
G896043 NA other upstream 894050 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1587954 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1600183 47202925 ~ 47204842 (+)
LOC110534184 LOC106563731 other downstream 437418 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 590115 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1194706 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3609934 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3692444 52532434 ~ 52542498 (+)

Expression


Co-expression Network