LOC110534170 (frmd7)


Basic Information

Item Value
gene id LOC110534170
gene name frmd7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48840604 ~ 48855932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618877.2
gagcgAGAAAGGGAAGGTAGAGAGCGAAGGGTTTGATGACATTTGTTTTGTGGTGGCGTGACAGAACAGATGGCTCATTACGCCTGTGAATGCTCTGCTCACGGGGCTTTGTTTTGCCGTAATTTGATCTCCGCTCTGTTGAGAGTATTTACAGATTCAAGGGAGATGAATTACTGTAAAACACATGGCTGGGTCATTAAGAGCTGGCAAATATGCTCTTTATTGGAGGAGAGGATAAAACTAAAAACAACCTCATTGAGGGGAGGATTATCAAGCTACATATAGAGTAGGAATATACTAGTAGTATTTTTCTTACGGTATATGTTCTGTTTGCTTAGTTTAGTGTCACATACCTGACTATTCCTGGAGACAATGTATGGCTTTTGTGCTGGATATCTGGGCCTGAAGGCTATAGCAGGCCTCACTGTCTCCTCCGTAACATCAACAAACACTGCAATGTCACCCTCATCTGTTACGGCAGTCAAAGACCTTTTAGAGCAGGGCATCAAATCAAACTGACATATCCTCATTCAAACATACTTCCCACTTAATAATCGCTTGTATTTCCAGGATATTTTCCTCATTTAGTGTCACCATTTAGTGTTTGTAGACTCATTGTTCTTGTTTTTCTCCACTTAGTGAACCAGCCTCTCAATGGTATCATTGGGAATCAATTTTCTGCATGGAGAGTCGTGACATTAAAATGCAAAAGGGTAAAGAGAGCCACAGGCTAGACACCTAGCGGGGCAGATTTCACTCACTCTATGGGGGGGCAGACTCATAGAGACGGCAGAGAATGTGCTCTTATGCACagtagatttttttttgtgacaGGAAATGCTTTCTGTAGATTTCTTCAAAGATAATTTACATCAGATGTCCTTTTCTGTGGAATGCTGCGGAAGAGTTTCTTAGGAATTCAAACATTCTGAACTTGTTTCAAACATGATCATTGGTGAACACCCAAATCAGTGAAATTACTATACAAACGCTGTACAGTAATGAATTATGCCTCAATGGCTTGCAAAATAGTGTTTTTCATTCATATTCATATATTCATATTTcatatttgcattgtccccctaCCTAGTGAATGATCTCCGATTGAGTGAATGATCTAATTTGTACTATTAAACAATCATTAGCCATTCTGCCTATGGAAAATACAACAGGTTCTTTAGAATGTTACTCTCCAGTAAAATATTATATAGAATAGAGGGTAGACCTTCAGTCAGATTTGTTTTTTTGCAAAGACCTGTCCCAGCTAGTTCACAGTCCTGAGTGACCATGGCGGTCATGTTAAATGCACTCACTGACATCTAGTGGCGTTCTACGGTACTGTAGCTTCCTTTTTTCCAGAGAGCTCCTGATGATGCTACCAGTGACCACCTGACCTTGCATTACTGCagtaatctcacacacacacatttaatgcGTGCGCGACCTTTTCCAAAGTGCAGCCATCTATTTGGAGCTGTGCCTGGAGATGTTAgcgaggagaggatagagaggatggTTCCCCTCTTCATAGTGGGTTTTGAACGATGTTGCTTGGAATTTGGTGAGGATGGATCATTGAGGGGATGATGAAACCCACAGAAGAGAAAAGgTGTGTTTTGCTCGTGACGAGTGGGTGAGGATGACCGAGAGCCAAGGTGGACACGAGCCCAACCGAACTCAAGAGTTGAGAGCCGTCGTTGTTCGCAAGAAACAAAGAGCGGGCACATTCAAACTGCGGGTCATCTTCTTGGATGACAGTGAGAGCATATTTGAGGTTGAGCAAAGGATCCTTGGAAATGATTTCTAcaacaaagtatgtggacacttgaaGCTGTTGGAAAAAGAGTATTTTGGCCTTGAGTTCCGTCACCAGTGTGGCAGTTATATGTGGTTGGAACTGCTAAAGCCCCTGGCCAAGCAAGTCAAAAacaCCAGTGATCCAACTTTCCGCTTCATAGTGAAGTTCTTCCCCCCAGACCCAGGGCAGCTGCAGAAAGAACTGACCAGGTACCTGTTTGCATTGCAGATTAAACAGGATTTGTCCAATGGGAGTCTTACTTGCAATGATAACAGCGCTGCTCTCCTCGTCTCACATTTACTTCAGTCAGAGCTAGGTGACTACGAGGAGGAACTTGACTTGCAACATCTAGAGACCAAGAACTACGTACCCAACCAGGAGTGCCTCCACAAGAAGATCCTGCGCTTCCACAAGAGGCACAGgggccAGACACCAGGTGAGGCAGACAGCCAGCTGCTAGAGGTGGCTCGGAAGCTGGACATGTACGGGATCCGCCCACAGGCTGCCAATGATGGAGAGGGCACCAAGATCAACCTGGCCATCACACACTCTGGAGTGTTGGTCTTCCAGGGCAACACCAAGATAAACACTTTCAGCTGGGCCTCAATCCGCAAACTGAGTTTTAAAAGAAAGCATTTTTTGATTAAACTCCATGCTAAGATTgtgccCTCTCGTAAGGACACAGTAGAGCTAGCCATGGCCAGCCGGGATGTGTGTAAGGCCTTCTGGAAGACGTGTGTAGAGTACCATGCCTTCTTCCGTCTCTCTGAGGAGCCCAAGTCCCGACACAAGTCCTTCCTCTACAGTAAAGGCTCCTGCTTCAGATACAGTGGTAGGACCCAGCAACAACTGTTGGACTGTgtcaggagaggggggaggaagaaccTGCCTTTTGAAAGGAAGTTCTACAAGGCCCACTATGATAACAGGCAGTGCAGGTCCTCTCCTGACCTCCTCACTGATGTCTCCaaacaggtgtaTGAGCAGACCTGTGGGTTCCCCCATGCCGACTGTGCCCCGGGTGGGAAGCGCAGTCAGTCTGCTGTGGAGGTGCTGTTCACCACTATGGATCTGGAGGGCCCCCCGTCCCACTCTGCACACACTTCTGCCTTCGGCCAGTCCcgctcctcttccttctctgggGCTGAGCCAGGGCCCACAGCGCTACAGGGGCTGCGGTGCCACAGTGAGAGGGCCACGCAGAGCTTCAACCGCAGCAGCAATGTGGCTGAGGGGCCTCAGAGGGGCCGACTGCTGGCCAATACACAGCAGCTGGTCCTGCTCTACCCCAGCCCTCACTCCCACCTTTACCCCTACCCCTGCCTGGAGCTGCACCCCATCCTGCCCCTCTCTGCTCAGGCCTACATGTCTGgctgctcctctttctccttgGACCACGCTCCAGCCCCACTGCCTCTGTCCCACTACGGCCCAAGGCCTGCTCCCCAGGCCGCCCTCCTGGACGAGTTCATCCGCTCCTCCAGTTTCTCCAACCCCTCCTCCTTGTCTCCCGGTCTGCGGCGCCAGCGCCATCGCTACAACGTGCCTCCAAGCATGGCTATCGCTCCGGGGCTGTATGCTGCCACTCTGGCTGGTTGTGGTGCTGGTCGGAGAGAATTTGGCAGAGAGGAGACGGCAGGCCACTTCAGTGATGACTCCAGCTACCAGGCAGGCCTGCCCAAGCGCTCCTGGAGCCAGTCTGATGTGAAGGTCCTCCGGCCCTCTGCCCCAGCAGCAGAGTTCCGCCCTCTAGGTCACTACCCTCACCTATCACGCCGACACTCGCCTGCACGCCCAACACACCTCCCTCTTAACCTGTCCCCCATGCCTGAACGGCCCGCCTCTGTGTGCGTGCTAGGTGCCGGGAGCAGGACAGGGAGTGGAGAGATCAGCCTCAGTGACTCAGACGTCATGTTCCCATACTACTGCCCAGGGCTAGGGAAACTGGTGCGCTCTGGCCCCCTGGCTCGGATGCGCATTTCATCTGGTAGTCTGCAGCTGGACGAGGGGGAGGAAGACTCCTTTAACTTAAGTGACCCTGAAGGCAGTGCAGCAACAAAGCGGTCATGAGCCAATCAGAGCGTTAGTATTTGTACTGGCGCTATCCCTAGCCACTCACAGCTTATTCTCTTTGGTGGGCCTGTGGTTACAATGGGAGGTCCTCCTGACCCGATAAATCTCTAAAAAGGGTTTTTGTGACCATTCCCACAGGCCCCGATGGTTCCGGTCACTGGTCATATTTGAAGATGAAGGCATGAGAGACGCACCAAACTGATGGACCTGACTTCATAAGCATGCCTCGAAGAAACCGTCAAACAATTCACATTTTTTGGGGAATAGACTTTACATGAACAAATGTAATTACTTGCACCACCTAAGATAAGTACTTGGATGAAAGACAAAACAGCCCCTCTTCAGAGTCTTACCATTTCAGTGCTGGATTTTGATGGACcttataggctactgtactggTCTCACCTCACTGTCAACAGTCTAAGGAACTCCAACTGTTATTGGAATATTCCTAATGAAACAAGCCTTTTGAAAATGGTTTCAAAGACCGCAAGGACTGTGGAAAGAATAAGGACTTTCTATGCACTACTTAGCTGCACATAACAGGAAGTGGACCGGCTTCAGAAACAAAATGGGAATACTGTAGACTTGTCCACCATTCTGCCGTTGAAAGATACTGATGCAATTCAATGTATTTTCATGGAATACTGACTGAcacattcaataaaaaaaaaaaaacagaaattcataatttaaatatttattttcaaaacCAAACCAAAATGAATTTTGCAACGATTGAAGCAAAGACTATCCAATATATACATTTGACAGCTTCCTGTAAAGCTAAGTCAACAGTTTCTTTTATAAAGTTCAGATAcagaaatataaaaaaaaatcttgtTTTCCATCTGCATGTAATTGATGAGGAAATACAAAAATATGCAATGATCAAATGCATTATTGCCTTCACaaacttattattactatttaatGCATTCGATGATACATGACCACAATTAAATAGAGAATATCACTACGATttaagtattaggcaccattggATGTTAAGTTGGCATACTTCCTCCCTTCCAAAAGGGGCTCTGTCACCACCACACCAAAGATGGCACCCttttgtatgtatgtgtctgaGCTTGGCTGATAACATTCTCAAGAAAATCTTTATTTGGGATTTGTTCAAAAGGACACGACTCCCAGTAGAGTGCTCAAGGACTCAGACCAAAATGTTTCAAACATTACAATACCCACATTGCCATTTCACTTGAGCACTTGTCAAGTATTTTTGGTAGAGGGAGAGCATAGTGTCTTTAAGACAGAAAAGTCCCCCGTCTCCCTTGAGATCTAGTCTAAGTAGGGAAATAAACTAGCAAGCGTATTTAGAAAAAGCTGCATCCCCATCAAAGTGTGTGCAGTGCATATTTCCTTCAAAAGTAGATCTCCAAAGCCTCCAATAGGATTGCCCTTCTCGAGCTAAGATCCCCTAAGATAGATATGATTTGTATCTTTTGGAATGAGAGGGAGCGTGATACATCTTTTGCACAGCAAAGTCTTCCCATTTCCGATACGGTCTTTCCTAATGCCCAAAACAAGTGACCCCCTTTCCAATTGTCACCGAACAGAAGTTTCCGTTTACAGACATCCACTGGTCTGAGCCTTTCCCCCCACCCACGGACTGCTCTCAGCAGAGGTATTGAACTCCTGTGGTTTGACTAGATATGCAGTTCTCCAAACAGCAGGTTTCTAAATGCTACAAGTGACATGAAGATGGTAAGCTAGACATCAGAAACAAGTGCAGTACACTGAACA

Function

symbol description
frmd7 Predicted to enable cytoskeletal protein binding activity. Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in congenital nystagmus 1. Orthologous to human FRMD7 (FERM domain containing 7).

NR:

description
FERM domain-containing protein 7

GO: NA

KEGG:

id description
K23971 FRMD7; FERM domain-containing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618877.2 True 5638 mRNA 0.47 13 48840604 48855932

Neighbor

gene id symbol gene type direction distance location
chm LOC106602942 coding upstream 320 48805025 ~ 48840284 (+)
LOC118936702 NA coding upstream 1783 48837072 ~ 48838821 (+)
LOC110534166 LOC106602946 coding upstream 216203 48587286 ~ 48624401 (+)
LOC118936701 NA coding upstream 272191 48567576 ~ 48568413 (+)
LOC110534165 LOC106602949 coding upstream 289426 48550084 ~ 48551178 (+)
rtn3 rtn3 coding downstream 55454 48911386 ~ 48927265 (+)
LOC110534173 LOC106602939 coding downstream 89731 48945663 ~ 48955133 (+)
LOC110534174 LOC106602938 coding downstream 123600 48979532 ~ 48980528 (+)
LOC110534176 LOC106602937 coding downstream 132407 48988339 ~ 48993933 (+)
LOC110534177 LOC106602935 coding downstream 173631 49029563 ~ 49103820 (+)
G897237 NA non-coding upstream 172497 48666776 ~ 48668107 (+)
G897207 NA non-coding upstream 218631 48596351 ~ 48621973 (+)
G897165 atg4a non-coding upstream 301451 48538542 ~ 48539153 (+)
G897121 NA non-coding upstream 315838 48524526 ~ 48524766 (+)
G897336 NA non-coding downstream 24615 48880547 ~ 48880763 (+)
G897337 NA non-coding downstream 24932 48880864 ~ 48881140 (+)
G897362 NA non-coding downstream 81706 48937638 ~ 48964172 (+)
G897689 NA non-coding downstream 144220 49000152 ~ 49000627 (+)
G897690 NA non-coding downstream 147098 49003030 ~ 49003245 (+)
G897244 dach2 other upstream 163539 48676257 ~ 48677065 (+)
G896217 NA other upstream 604988 48235182 ~ 48235616 (+)
G896043 NA other upstream 929629 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1623533 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1635762 47202925 ~ 47204842 (+)
LOC110534184 LOC106563731 other downstream 421770 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 574467 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1179058 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3594286 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3676796 52532434 ~ 52542498 (+)

Expression


Co-expression Network