LOC110534173 (LOC106602939)


Basic Information

Item Value
gene id LOC110534173
gene name LOC106602939
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 48945663 ~ 48955133 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618886.2
AGTCAACACATGCAAACCCCCATGATGCTCTGCGAAAAACGCCGATGGCAATACATAATAGTTACATTGATTGAGCTGTTAATGTTATTCATGTGATAAAACTCATTTACCTGCCCATCTGCCGCCCTTGCTAGCTCAGCTGCCGAACAGGTAATACAGGTGAGACTATGCTGCACAGATTTGTTGCGCGTAGCCCACACACCGTCACTGTTGTCAGAAAGCAGAACAACCGAAAACCCCTTCAGTGTTAGGAGGGTAAGGAGTCTGTCTACAAGTTCCCTGGCCTGTTATCACGCTTGTTTGAACATCGCAATtgagcagagcagaacagcagAGCAGCGACAAGACGTGTTTGTGTCTCCTACTGTGAATTTGATGTCTGTCCCCCTCGGTCCAGACATGCCTGTGCCAGTACCTAAACCACGGGCACGGTACAAGCGGGCTGGCGGGAGCTTACAGAGCCAGCTCTCTTCTGAGAGGGATTTTCTATGTGATACACCTGATCCAACGGCAAGTACAGGAAATCCTAGCAAAGGTGTTCCACCCACAAATTATTTGCTGGTAGAAAGTGAAGACAACCATGCCATTATCCTAAATAAACCTCCGTTCAGCCCTGCCATCCCCAGCCCGGCTAATGAGAATCAAAGCCAGCATAACTTCCCTCTCTCCAGATCTGATTCTGGAGTGACTCTGTCTTGCCCATTACTGGGCAGTAAGGATCCAGATGGGCTCCACGACAGATCTGCCTGGTCATCCAACCCTCCATACAGTTCTGCTGCAGATTATGACCCCTATATTACTGTAGTAGCTGACTGGGCAAAAGACCTTGGATCGGAATCTTCCAATGATGATGATGCCGTTACTGGAGAAATAAAGAACCCATCTCAGATGAACAATGTGGTGTCAAGGCAGGTTGGTGTTGTCCCCAATGGAGAAACCCCTCAGCCTCCTGTGGAACAGGCGTCTATGCAGACCAGACCAATCAAACAAAAGACCCCACGTGCTGCCACCATCCGCGTCAGCAGGAGAAAGCAGGCAGCAGCGAGCGGTGGTGGTGCCCAGATAGCAGAGTCCTCTCGTAGGGAGAGTGTTGTGTCCAGATCCAGCTGGCTGGATGTATGGAAGGGACGCAGGCACAATGTTCTGTGGGCCACCCTGGATGGACAGTTGGTATCACTATGGAAGAAACGCACAGACAAGTTCACAGACATAGTGTTCCACGTGTCAAGCATCACCGACGTCCGTAAGCAGGAGAAAGGACGCTTCTCCGTTTACTTCAGCAAGAAACACTTTGAGTTCATGGCACACAACAAAGAGGTGCAGGAGGGCTGGGTGACTTCCCTTCTGGCTTCTCGTGGGCGGGAACCCCCAGTCCCTCCGGAGCAGCATGGAGCCCTGACCATGAAGGGCCCTCGCAACAACAGAGTGTACGCTGCCATCTGTGGACACAACCTATGGATCTACAACAATAAAGAGGACTTCCAGTTGGGGGTTGGGATGACCTTTGTGTCCATGAACGTGGCGTCAGTGAAGCAGACTGGCCGTCATAGCTTCAGCCTCATCACACCGTACAAAACCTTCAATTTCTCCACAGACTCGTTGAGGGAGCTGGGCGTGTGGTTGGAGAGCCTGACCCAGGTGATCCGCAGTGCCCTGTCATGCAGCGAGGTGGCCGAGCGACTCTGGGCCAGCCCATGGAACAAAGTGTGTGCCGACTGTGGCTGTGCCAACCCTGAGTGGGCCTCAGTCAACCTGCTAGTGGTCATCTGTGAGGCTTGTGCAGGCCAGCATCGGTCTTTGGGCATGCATGTGTCCAAAGTGAGAAGCCTGAAGTTGGACATTAAAGTGTGGACCGAACCTCTGATTCTGCTCTTTGTCCATTATGGGAACAAAGCAGCCAATGATGTGTGGGCTCACAACGTGCCGGGTGCAGAGCAGATCCTGCCGGACTCCTCTGTGGATCAGAGGGGGGAGTTCATTAGGGCCAAGTACACCAAAGGTCGATACAGACGGACCCATCCGTTAGCCTCCAGCCAGAACCTGCTCAACAAGAGGCTGTGTGAGATAGTGTGTGGCCCTAATGTCCCAGAGACCATGTCCCTGCTGTGCTCGGGGGCGCGGGTCCTGTGCCACTCAGGGGACCCTCATTGCTCCTCACCCATCTCACTGGCAGAGCGGGCTGGACAGGCCATGCAGACTGAGCTCCTCAGACACAACGAGTACACAGAGCCCCCTGCCTATGCTCATCAGAAGCCCAGCAGAGACCCTGCTACCTCTGTCCCCTTGTCTGCTGCAGGAGAGGAGCTCCATGGGAAGCTGGAGGAGGACCGCTTCCTGTTCTCCCAGGAGAAcgactctgctgcctgtgatgtTCTGGACCTGAGGGAGGTCATCTCCATCTTCGACTGCTCCAACGGACCAACTCATGCATTTGAGATGGTGACTCTGACGGACCAGTTGCTGTGCAGTTCTGATACAGAAGATGGTTTACTCATACACCTTCTCCATATTCTCAAGgTGTTGTTGCCCGGGCCCATAGAGGAGGAGCTGGACAGGGGGTTTGCTATGTCCCGGGTgtctctgagggagggaggaggcctGCAGCACAACGAGGTCTGGGCAGTGCTCCGTGGAGGTCAGGTCCTCATCTATCCTACTGACCAGCAGGGCCACAGAGAAAGGCTAACACTCAACCTCGAGACGCAATACAAGATAGATTCCTCTGAGAACACCATAGAGCTGGTCACTGGAGAGAGAACCATGTCCATGCAGTTTGAACGAGACCACAGCTGTCAGTCCTGGCACAGCTTACTGAAACGGGCAGTGACCACAGAGAGGAAACTGTACCAGCTGCCCCCCAACGCCATTGGCAATGTGCCCCCTGCCATCGAGAGGTGTATCTCACACATCACACAATATGgtttAAAGGTGGATGGGCTGTACCGGCGCTGTGGCTTGGCCACAAAGATCAGTTGTCTGGTGGAGGCCCTCAGCAGTTCACCTACAACTACACCTCTGGAGACAGACGAAGAGGGTCTCCTGGACGCTGCGGGGGCCCTGAAGCAGTATGTCCGCCAGCAGGTGGTGCTCATCCCagaaacacacaggaaactgtgggTGGAGGCCGCAGCTCACACAGAAGAGACCTTTAGACTGACTACATACCGCGGACTACTGAAGAAGCTGCCCCCTGACAATAGAATCACACTCAATGCCCTCTGTGGACACTTCTACATAGTTCAGCAGTATAGTGCAGAGAACCGTATGACAGCTCAGAACCTGGCACTGGTGTTTGTCCCCACACTATTCCAGGAGCTGGCCATGAACACTGACATGGTGCAGCTCACCAGAGAGCTCATTATCCACTACACACTCCTCTTCCTGGGTAAAGAAGAGGAGTCTGACATGGAGAGTGAAGAACTAATAACTAAGTTttgaaaaaatatacagtaccagtcaaatgtttggacacatctactcattcaagggtttttcttttttttggtactacatatggaatcatgtagtaaccaaaaa
>XM_036933292.1
AGTCAACACATGCAAACCCCCATGATGCTCTGCGAAAAACGCCGATGGCAATACATAATAGTTACATTGATTGAGCTGTTAATGTTATTCATGTGATAAAACTCATTTACCTGCCCATCTGCCGCCCTTGCTAGCTCAGCTGCCGAACAGGTAATACAGGTGAGACTATGCTGCACAGATTTGTTGCGCGTAGCCCACACACCGTCACTGTTGTCAGAAAGCAGAACAACCGAAAACCCCTTCAGTGTTAGGAGGGTAAGGAGTCTGTCTACAAGTTCCCTGGCCTGTTATCACGCTTGTTTGAACATCGCAATtgagcagagcagaacagcagAGCAGCGACAAGACATGCCTGTGCCAGTACCTAAACCACGGGCACGGTACAAGCGGGCTGGCGGGAGCTTACAGAGCCAGCTCTCTTCTGAGAGGGATTTTCTATGTGATACACCTGATCCAACGGCAAGTACAGGAAATCCTAGCAAAGGTGTTCCACCCACAAATTATTTGCTGGTAGAAAGTGAAGACAACCATGCCATTATCCTAAATAAACCTCCGTTCAGCCCTGCCATCCCCAGCCCGGCTAATGAGAATCAAAGCCAGCATAACTTCCCTCTCTCCAGATCTGATTCTGGAGTGACTCTGTCTTGCCCATTACTGGGCAGTAAGGATCCAGATGGGCTCCACGACAGATCTGCCTGGTCATCCAACCCTCCATACAGTTCTGCTGCAGATTATGACCCCTATATTACTGTAGTAGCTGACTGGGCAAAAGACCTTGGATCGGAATCTTCCAATGATGATGATGCCGTTACTGGAGAAATAAAGAACCCATCTCAGATGAACAATGTGGTGTCAAGGCAGGTTGGTGTTGTCCCCAATGGAGAAACCCCTCAGCCTCCTGTGGAACAGGCGTCTATGCAGACCAGACCAATCAAACAAAAGACCCCACGTGCTGCCACCATCCGCGTCAGCAGGAGAAAGCAGGCAGCAGCGAGCGGTGGTGGTGCCCAGATAGCAGAGTCCTCTCGTAGGGAGAGTGTTGTGTCCAGATCCAGCTGGCTGGATGTATGGAAGGGACGCAGGCACAATGTTCTGTGGGCCACCCTGGATGGACAGTTGGTATCACTATGGAAGAAACGCACAGACAAGTTCACAGACATAGTGTTCCACGTGTCAAGCATCACCGACGTCCGTAAGCAGGAGAAAGGACGCTTCTCCGTTTACTTCAGCAAGAAACACTTTGAGTTCATGGCACACAACAAAGAGGTGCAGGAGGGCTGGGTGACTTCCCTTCTGGCTTCTCGTGGGCGGGAACCCCCAGTCCCTCCGGAGCAGCATGGAGCCCTGACCATGAAGGGCCCTCGCAACAACAGAGTGTACGCTGCCATCTGTGGACACAACCTATGGATCTACAACAATAAAGAGGACTTCCAGTTGGGGGTTGGGATGACCTTTGTGTCCATGAACGTGGCGTCAGTGAAGCAGACTGGCCGTCATAGCTTCAGCCTCATCACACCGTACAAAACCTTCAATTTCTCCACAGACTCGTTGAGGGAGCTGGGCGTGTGGTTGGAGAGCCTGACCCAGGTGATCCGCAGTGCCCTGTCATGCAGCGAGGTGGCCGAGCGACTCTGGGCCAGCCCATGGAACAAAGTGTGTGCCGACTGTGGCTGTGCCAACCCTGAGTGGGCCTCAGTCAACCTGCTAGTGGTCATCTGTGAGGCTTGTGCAGGCCAGCATCGGTCTTTGGGCATGCATGTGTCCAAAGTGAGAAGCCTGAAGTTGGACATTAAAGTGTGGACCGAACCTCTGATTCTGCTCTTTGTCCATTATGGGAACAAAGCAGCCAATGATGTGTGGGCTCACAACGTGCCGGGTGCAGAGCAGATCCTGCCGGACTCCTCTGTGGATCAGAGGGGGGAGTTCATTAGGGCCAAGTACACCAAAGGTCGATACAGACGGACCCATCCGTTAGCCTCCAGCCAGAACCTGCTCAACAAGAGGCTGTGTGAGATAGTGTGTGGCCCTAATGTCCCAGAGACCATGTCCCTGCTGTGCTCGGGGGCGCGGGTCCTGTGCCACTCAGGGGACCCTCATTGCTCCTCACCCATCTCACTGGCAGAGCGGGCTGGACAGGCCATGCAGACTGAGCTCCTCAGACACAACGAGTACACAGAGCCCCCTGCCTATGCTCATCAGAAGCCCAGCAGAGACCCTGCTACCTCTGTCCCCTTGTCTGCTGCAGGAGAGGAGCTCCATGGGAAGCTGGAGGAGGACCGCTTCCTGTTCTCCCAGGAGAAcgactctgctgcctgtgatgtTCTGGACCTGAGGGAGGTCATCTCCATCTTCGACTGCTCCAACGGACCAACTCATGCATTTGAGATGGTGACTCTGACGGACCAGTTGCTGTGCAGTTCTGATACAGAAGATGGTTTACTCATACACCTTCTCCATATTCTCAAGgTGTTGTTGCCCGGGCCCATAGAGGAGGAGCTGGACAGGGGGTTTGCTATGTCCCGGGTgtctctgagggagggaggaggcctGCAGCACAACGAGGTCTGGGCAGTGCTCCGTGGAGGTCAGGTCCTCATCTATCCTACTGACCAGCAGGGCCACAGAGAAAGGCTAACACTCAACCTCGAGACGCAATACAAGATAGATTCCTCTGAGAACACCATAGAGCTGGTCACTGGAGAGAGAACCATGTCCATGCAGTTTGAACGAGACCACAGCTGTCAGTCCTGGCACAGCTTACTGAAACGGGCAGTGACCACAGAGAGGAAACTGTACCAGCTGCCCCCCAACGCCATTGGCAATGTGCCCCCTGCCATCGAGAGGTGTATCTCACACATCACACAATATGgtttAAAGGTGGATGGGCTGTACCGGCGCTGTGGCTTGGCCACAAAGATCAGTTGTCTGGTGGAGGCCCTCAGCAGTTCACCTACAACTACACCTCTGGAGACAGACGAAGAGGGTCTCCTGGACGCTGCGGGGGCCCTGAAGCAGTATGTCCGCCAGCAGGTGGTGCTCATCCCagaaacacacaggaaactgtgggTGGAGGCCGCAGCTCACACAGAAGAGACCTTTAGACTGACTACATACCGCGGACTACTGAAGAAGCTGCCCCCTGACAATAGAATCACACTCAATGCCCTCTGTGGACACTTCTACATAGTTCAGCAGTATAGTGCAGAGAACCGTATGACAGCTCAGAACCTGGCACTGGTGTTTGTCCCCACACTATTCCAGGAGCTGGCCATGAACACTGACATGGTGCAGCTCACCAGAGAGCTCATTATCCACTACACACTCCTCTTCCTGGGTAAAGAAGAGGAGTCTGACATGGAGAGTGAAGAACTAATAACTAAGTTttgaaaaaatatacagtaccagtcaaatgtttggacacatctactcattcaagggtttttcttttttttggtactacatatggaatcatgtagtaaccaaaaa

Function

NR:

description
arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618886.2 False 3537 mRNA 0.53 24 48945663 48955133
XM_036933292.1 True 3486 mRNA 0.53 24 48945663 48955133

Neighbor

gene id symbol gene type direction distance location
rtn3 rtn3 coding upstream 18398 48911386 ~ 48927265 (+)
LOC110534170 frmd7 coding upstream 89731 48840604 ~ 48855932 (+)
chm LOC106602942 coding upstream 105379 48805025 ~ 48840284 (+)
LOC118936702 NA coding upstream 106842 48837072 ~ 48838821 (+)
LOC110534166 LOC106602946 coding upstream 321262 48587286 ~ 48624401 (+)
LOC110534174 LOC106602938 coding downstream 24399 48979532 ~ 48980528 (+)
LOC110534176 LOC106602937 coding downstream 33206 48988339 ~ 48993933 (+)
LOC110534177 LOC106602935 coding downstream 74430 49029563 ~ 49103820 (+)
LOC110534178 LOC100380851 coding downstream 205497 49160630 ~ 49181760 (+)
LOC110534179 LOC106602933 coding downstream 234810 49189943 ~ 49212130 (+)
G897337 NA non-coding upstream 64523 48880864 ~ 48881140 (+)
G897336 NA non-coding upstream 64900 48880547 ~ 48880763 (+)
G897237 NA non-coding upstream 277556 48666776 ~ 48668107 (+)
G897207 NA non-coding upstream 323690 48596351 ~ 48621973 (+)
G897689 NA non-coding downstream 45019 49000152 ~ 49000627 (+)
G897690 NA non-coding downstream 47897 49003030 ~ 49003245 (+)
G897764 NA non-coding downstream 158188 49113321 ~ 49115378 (+)
G897776 NA non-coding downstream 176727 49131860 ~ 49132088 (+)
G897778 NA non-coding downstream 180228 49135361 ~ 49135561 (+)
G897244 dach2 other upstream 268598 48676257 ~ 48677065 (+)
G896217 NA other upstream 710047 48235182 ~ 48235616 (+)
G896043 NA other upstream 1034688 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1728592 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1740821 47202925 ~ 47204842 (+)
LOC110534184 LOC106563731 other downstream 322569 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 other downstream 475266 49426785 ~ 49432958 (+)
G898894 LOC106603005 other downstream 1079857 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3495085 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3577595 52532434 ~ 52542498 (+)

Expression


Co-expression Network