LOC110534177 (LOC106602935)


Basic Information

Item Value
gene id LOC110534177
gene name LOC106602935
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49029563 ~ 49103820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933294.1
GCTGCGATTGGAGGAACCAAGCGAAGCGGGCGGGTGAAATGCTGGAGCAAACCTGTCAGCCAGCATCCCCCATTCACTTCCACTCGGTAGATCAGGAAGGTGATAGAGACGCTTGGCTCTCATCAAGGCTTCCAACCATCTTCCACAAAACATTTGACTAAAGGCAAGGACCACCTGAAACCCACCACCTCAGATCCAGCATGGCCACCATTACCTGCACCCGCTTCACTGAGGAATTCCAGATGTTTGAGGAACTGGGCAAGGGAGCTTTTTCTGTGGTGCGTAGATGCGTCAAGGTCCTCTCAGGGCAAGAGTATGCTGCTAAGATCATCAACACCAAGAAGCTCTCTGCCAGGGATCACCAGAAGCTGGACAGAGAGGCCAGGATCTGCCGATTGCTGAAGCACTCAAACATCGTGCGTCTCCATGACAGCATCTCAGAGGAGGGGCATCACTACCTGATCTTTGACCTAGTGACAGGCGGGGAGCTCTTTGAAGACATTGTGGCTCGAGAGTACTACAGCGAGGCCGATGCCAGCCATTGTATTCAGCAGATTCTGGAGGCAGTGCTTCATTGTCATCAGATGGGAGTCGTTCACAGAGACCTCAAGCCTGAGAACCTTCTGCTTGCCTCCAAGTCCAAGGGTGCTGCAGTGAAGCTGGCAGACTTCGGCCTGGCCATCGAGGTTGAGGGGGAACAACAAGCCTGGTTCGGCTTTGCAGGGACACCTGGCTACCTTTCTCCTGAGGTCCTGAGGAAGGACCCATATGGCAAAGCTGTGGACCTGTGGGCTTGTGGTGTGATCCTGTACATCTTGCTGGTGGGCTACCCTCCGTTCTGGGATGAGGACCAGCACAGACTGTACCAGCAGATCAAGGCTGGGGCCTACGATTTCCCCTCGCCTGAGTGGGACACTGTTACTCCAGAGGCGAAGGATCTCATTAACAAGATGTTGACGATCAACCCTGCCAAGCGCATCACAGCCTCTGAGGTCCTCAAGCACCCGTGGATCTCAcACCGCTCCACTGTGGCCTCCTGCATGCACAGACAGGAGACGGTGGAATGCCTGAAAAAGTTCAACGCCAGAAGAAAGCTGAAGGGTGCCATTCTCACCACCATGTTGGCGACCCGAAACTTCTCCGGAGGTAACAAGGCCAACAAGAAGACGGATGGTGTGAAGAAAAGGAAGTCCAGTTCCAGCGTCCAGCTGATGGAATCCTCAGAAAGCACCAACACCACTATTGAGGATGAAGACACCAGAGTGAGGAAACAGGAGATCATTAAGGTGACAGAGCAACTTATAGAAGCCATCAGCAATGGAGACTTCGAGAGCTATACgaAGATGTGTGACCCCAGCGTGACAGCGTTTGAGCCAGAGGCTCTGGGTAACCTAGTGGAGGGCCTGGACTTCCACCGCTTTTACTTTGAGAACTTGTGGTCTAAGAACAGTAAGCCTGTCCACACCACCATCCTGAACCCCCACATCCACCTGATCGGCGAGGAAGCTGCCTGCATCGCCTACATCCGCATCACCCAATACATCGACACCAACGGCATGCCCCGCACCGCCCAGTCGGAGGAGACACGCATCTGGCACCGCCGCGACGGCAAGTGGCAGATAGTCCACTTCCACCGCTCTGGATCACCCTCCGCCATCACCAACTGAGCTCCAGAGGGCGGGAGGGTTTGAGTGAGACATCTCTCTGAGTGACACAGGTGGGTGACCAGCTGGCTGCATGGGGACACAGAGGGATGCCCACCGACCGGCCCTGAGGAAGCACGAGCCCACTGCATCTCATCTCTTTACTTGAAATCAGATTACTCCTCTCAACGCTGTCTGTCACAAGCCAATCGCATAAATGTCACACCGTGTCAGGCTCTCATGTATGTATATATGCTTTCAGGACTATATTCGGTCTCTGCTCTGACTTTATTTTTTCTTGTCATGTTTCATTGGCAGAGGCACAATTAGTACAAATGGATGTACGAGGGGGGTTGAATCTCTAAAGCACTTGCCGTAATCGCCGCCTAGATCTCTTTTTTACACGTGACTTGGCCTTTTCAATGCAGTTGCACTTACACCATACCGTTACACACCGCCACGCCATCCTCTGAACCCGGACTTGCAGGCCATGATAGAAACATTGACGATGTACCATGTGTCACTGAACCAaaatatctactgtacatgtttGATTAATTTGACATGGATTGGATTATGAGAAGTGGGCAAGCATTCACGGACAGTGAAATGTTCCTTTTGATTATGGGTCTTCTGGTGTATTCCACAGTTGATAATCCACCACCCCGTGATCATGGTGCCTCGAGCACATTTAGCGTAGACAACAGAGGAAACCGTACTTTCCCCTCACAGGTTTAAATGACTGAATGGTGGACCGCTGGTCTGAACAGCCACTCACCTCATGTGATTATATGACTAGGGCAACAAACTGCCATTTCTGGGCTTCAATACTATACACAAATACATCTTTATATCTACAGAAACAGCTATATTTAACATGGGTAGGGTACTGTAGGTGAAAGTAATATTAAAACACCTCTTTAGGTTTTTCCAATGAGGACTGTGGGTGTACAGATCTTCCCTACCTATTAGTGTTATCAATACAAACCCTCTTGCTTGTTAGAGCAGTTTAACTTACTTGCAACAGATAGTGTAAAGTACAGTATTCTGCCTACTACAGTTCAAAGTAAGAAGCCATTTGCAAAAGACTACTAACACTACCCCAGGATTTTCTGCAATAAGTCagattgtaaaaaaaaagaaaaaaaaaagaactgAATAGAGTGTTCTGATTTAAGATTTGGTGTGGATTTTAAAATGGCAATGATTTTAATTAAGTGACTTTGTTTTATCAATGTGTTCCATTCCTTCTGTTTCTTTCCTCTCCAGTGTTAGCATCACATTATATTGCATGCAAGTGTAAAATGAGCGTTGGTTCTCTCTGCTTGGGCTTGTAGTCCTCAAAATGTgttaaatgtgacatttcagatGTACTCTGAGATTTTACCGGTGTTTTATCTTTTTACTGTCAGAAGAATGTAAATACTGGACAAATTTGAAAATGATATCACCTCTATAAGCTACAGTATATGTTTCCCTATCTGCTAACAATGAATTCCTCACAGAATGTTTGATTGTGCTGTGAAAAACTGCCCGAATGGGATTTagctttttttttcttccaaagtTGTATACCATTGGCAGTTCACTATAGATGAATATCCCACTTTGTACTGCAAAGCAATTTGTGAACAAATCCGCTGAATATGGCAAATGTTTTCCTCAACATATTTGATAGAGAAGGATACACCAAGAACCCCAACTGCCAAATTCTCTGTGTCTTTTCTAGAACTGATTCTACAGAATGTATACTTGTTTTATACAGTAGTTTAGTCTTATTGTGATAATGGCCAGGCCTACTGCCACTTTAATACGGCATTAGAACTTCAATCAGACTGAACTCTGATGTTGCGGTTGTTCCGCTCCTCGCACCGTACTGTATAAGAGCACGGCTTTTTTTATTATTCTGGGTAAGTTACACTTTCTTTTGAGGCATGCACGTTTGTAACGTACCGaagttgacgtgtgtgtgtgtttagaaaaatacattttctaaagGGTCTAAAGTAGTAATTTGCCGTCGTTATATAATATCTTGTGAATGTGGGGCTGTAAATAAAAGGATATTATAATGTCAAAGGCA
>XM_036933295.1
GCTGCGATTGGAGGAACCAAGCGAAGCGGGCGGGTGAAATGCTGGAGCAAACCTGTCAGCCAGCATCCCCCATTCACTTCCACTCGGTAGATCAGGAAGGTGATAGAGACGCTTGGCTCTCATCAAGGCTTCCAACCATCTTCCACAAAACATTTGACTAAAGGCAAGGACCACCTGAAACCCACCACCTCAGATCCAGCATGGCCACCATTACCTGCACCCGCTTCACTGAGGAATTCCAGATGTTTGAGGAACTGGGCAAGGGAGCTTTTTCTGTGGTGCGTAGATGCGTCAAGGTCCTCTCAGGGCAAGAGTATGCTGCTAAGATCATCAACACCAAGAAGCTCTCTGCCAGGGATCACCAGAAGCTGGACAGAGAGGCCAGGATCTGCCGATTGCTGAAGCACTCAAACATCGTGCGTCTCCATGACAGCATCTCAGAGGAGGGGCATCACTACCTGATCTTTGACCTAGTGACAGGCGGGGAGCTCTTTGAAGACATTGTGGCTCGAGAGTACTACAGCGAGGCCGATGCCAGCCATTGTATTCAGCAGATTCTGGAGGCAGTGCTTCATTGTCATCAGATGGGAGTCGTTCACAGAGACCTCAAGCCTGAGAACCTTCTGCTTGCCTCCAAGTCCAAGGGTGCTGCAGTGAAGCTGGCAGACTTCGGCCTGGCCATCGAGGTTGAGGGGGAACAACAAGCCTGGTTCGGCTTTGCAGGGACACCTGGCTACCTTTCTCCTGAGGTCCTGAGGAAGGACCCATATGGCAAAGCTGTGGACCTGTGGGCTTGTGGTGTGATCCTGTACATCTTGCTGGTGGGCTACCCTCCGTTCTGGGATGAGGACCAGCACAGACTGTACCAGCAGATCAAGGCTGGGGCCTACGATTTCCCCTCGCCTGAGTGGGACACTGTTACTCCAGAGGCGAAGGATCTCATTAACAAGATGTTGACGATCAACCCTGCCAAGCGCATCACAGCCTCTGAGGTCCTCAAGCACCCGTGGATCTCAcACCGCTCCACTGTGGCCTCCTGCATGCACAGACAGGAGACGGTGGAATGCCTGAAAAAGTTCAACGCCAGAAGAAAGCTGAAGGGTGCCATTCTCACCACCATGTTGGCGACCCGAAACTTCTCCGGAGGTAACAAGGCCAACAAGAAGACGGATGGTGTGAAGGAATCCTCAGAAAGCACCAACACCACTATTGAGGATGAAGACACCAGAGTGAGGAAACAGGAGATCATTAAGGTGACAGAGCAACTTATAGAAGCCATCAGCAATGGAGACTTCGAGAGCTATACgaAGATGTGTGACCCCAGCGTGACAGCGTTTGAGCCAGAGGCTCTGGGTAACCTAGTGGAGGGCCTGGACTTCCACCGCTTTTACTTTGAGAACTTGTGGTCTAAGAACAGTAAGCCTGTCCACACCACCATCCTGAACCCCCACATCCACCTGATCGGCGAGGAAGCTGCCTGCATCGCCTACATCCGCATCACCCAATACATCGACACCAACGGCATGCCCCGCACCGCCCAGTCGGAGGAGACACGCATCTGGCACCGCCGCGACGGCAAGTGGCAGATAGTCCACTTCCACCGCTCTGGATCACCCTCCGCCATCACCAACTGAGCTCCAGAGGGCGGGAGGGTTTGAGTGAGACATCTCTCTGAGTGACACAGGTGGGTGACCAGCTGGCTGCATGGGGACACAGAGGGATGCCCACCGACCGGCCCTGAGGAAGCACGAGCCCACTGCATCTCATCTCTTTACTTGAAATCAGATTACTCCTCTCAACGCTGTCTGTCACAAGCCAATCGCATAAATGTCACACCGTGTCAGGCTCTCATGTATGTATATATGCTTTCAGGACTATATTCGGTCTCTGCTCTGACTTTATTTTTTCTTGTCATGTTTCATTGGCAGAGGCACAATTAGTACAAATGGATGTACGAGGGGGGTTGAATCTCTAAAGCACTTGCCGTAATCGCCGCCTAGATCTCTTTTTTACACGTGACTTGGCCTTTTCAATGCAGTTGCACTTACACCATACCGTTACACACCGCCACGCCATCCTCTGAACCCGGACTTGCAGGCCATGATAGAAACATTGACGATGTACCATGTGTCACTGAACCAaaatatctactgtacatgtttGATTAATTTGACATGGATTGGATTATGAGAAGTGGGCAAGCATTCACGGACAGTGAAATGTTCCTTTTGATTATGGGTCTTCTGGTGTATTCCACAGTTGATAATCCACCACCCCGTGATCATGGTGCCTCGAGCACATTTAGCGTAGACAACAGAGGAAACCGTACTTTCCCCTCACAGGTTTAAATGACTGAATGGTGGACCGCTGGTCTGAACAGCCACTCACCTCATGTGATTATATGACTAGGGCAACAAACTGCCATTTCTGGGCTTCAATACTATACACAAATACATCTTTATATCTACAGAAACAGCTATATTTAACATGGGTAGGGTACTGTAGGTGAAAGTAATATTAAAACACCTCTTTAGGTTTTTCCAATGAGGACTGTGGGTGTACAGATCTTCCCTACCTATTAGTGTTATCAATACAAACCCTCTTGCTTGTTAGAGCAGTTTAACTTACTTGCAACAGATAGTGTAAAGTACAGTATTCTGCCTACTACAGTTCAAAGTAAGAAGCCATTTGCAAAAGACTACTAACACTACCCCAGGATTTTCTGCAATAAGTCagattgtaaaaaaaaagaaaaaaaaaagaactgAATAGAGTGTTCTGATTTAAGATTTGGTGTGGATTTTAAAATGGCAATGATTTTAATTAAGTGACTTTGTTTTATCAATGTGTTCCATTCCTTCTGTTTCTTTCCTCTCCAGTGTTAGCATCACATTATATTGCATGCAAGTGTAAAATGAGCGTTGGTTCTCTCTGCTTGGGCTTGTAGTCCTCAAAATGTgttaaatgtgacatttcagatGTACTCTGAGATTTTACCGGTGTTTTATCTTTTTACTGTCAGAAGAATGTAAATACTGGACAAATTTGAAAATGATATCACCTCTATAAGCTACAGTATATGTTTCCCTATCTGCTAACAATGAATTCCTCACAGAATGTTTGATTGTGCTGTGAAAAACTGCCCGAATGGGATTTagctttttttttcttccaaagtTGTATACCATTGGCAGTTCACTATAGATGAATATCCCACTTTGTACTGCAAAGCAATTTGTGAACAAATCCGCTGAATATGGCAAATGTTTTCCTCAACATATTTGATAGAGAAGGATACACCAAGAACCCCAACTGCCAAATTCTCTGTGTCTTTTCTAGAACTGATTCTACAGAATGTATACTTGTTTTATACAGTAGTTTAGTCTTATTGTGATAATGGCCAGGCCTACTGCCACTTTAATACGGCATTAGAACTTCAATCAGACTGAACTCTGATGTTGCGGTTGTTCCGCTCCTCGCACCGTACTGTATAAGAGCACGGCTTTTTTTATTATTCTGGGTAAGTTACACTTTCTTTTGAGGCATGCACGTTTGTAACGTACCGaagttgacgtgtgtgtgtgtttagaaaaatacattttctaaagGGTCTAAAGTAGTAATTTGCCGTCGTTATATAATATCTTGTGAATGTGGGGCTGTAAATAAAAGGATATTATAATGTCAAAGGCA

Function

NR:

description
PREDICTED: calcium/calmodulin-dependent protein kinase type II subunit alpha isoform X3

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function

KEGG:

id description
K04515 CAMK2; calcium/calmodulin-dependent protein kinase (CaM kinase) II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933294.1 False 3726 mRNA 0.47 19 49029563 49103820
XM_036933295.1 True 3693 mRNA 0.46 18 49029563 49103820

Neighbor

gene id symbol gene type direction distance location
LOC110534176 LOC106602937 coding upstream 35630 48988339 ~ 48993933 (+)
LOC110534174 LOC106602938 coding upstream 49035 48979532 ~ 48980528 (+)
LOC110534173 LOC106602939 coding upstream 74430 48945663 ~ 48955133 (+)
rtn3 rtn3 coding upstream 102298 48911386 ~ 48927265 (+)
LOC110534170 frmd7 coding upstream 173631 48840604 ~ 48855932 (+)
LOC110534178 LOC100380851 coding downstream 56810 49160630 ~ 49181760 (+)
LOC110534179 LOC106602933 coding downstream 86123 49189943 ~ 49212130 (+)
LOC110534180 LOC106602932 coding downstream 114379 49218199 ~ 49226581 (+)
LOC110534184 LOC106563731 coding downstream 173806 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 coding downstream 322965 49426785 ~ 49432958 (+)
G897690 NA non-coding upstream 26318 49003030 ~ 49003245 (+)
G897689 NA non-coding upstream 28936 49000152 ~ 49000627 (+)
G897362 NA non-coding upstream 65391 48937638 ~ 48964172 (+)
G897337 NA non-coding upstream 148423 48880864 ~ 48881140 (+)
G897336 NA non-coding upstream 148800 48880547 ~ 48880763 (+)
G897764 NA non-coding downstream 9501 49113321 ~ 49115378 (+)
G897776 NA non-coding downstream 28040 49131860 ~ 49132088 (+)
G897778 NA non-coding downstream 31541 49135361 ~ 49135561 (+)
G897780 NA non-coding downstream 34445 49138265 ~ 49140071 (+)
G897789 NA non-coding downstream 47200 49151020 ~ 49151272 (+)
G897244 dach2 other upstream 352498 48676257 ~ 48677065 (+)
G896217 NA other upstream 793947 48235182 ~ 48235616 (+)
G896043 NA other upstream 1118588 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 1812492 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 1824721 47202925 ~ 47204842 (+)
G898894 LOC106603005 other downstream 931170 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3346398 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3428908 52532434 ~ 52542498 (+)

Expression


Co-expression Network