LOC110534181 (LOC106602931)


Basic Information

Item Value
gene id LOC110534181
gene name LOC106602931
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49141750 ~ 49242962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933297.1
TAGCAAACAAGAAGTTGAAGAGTAGGCTATAGACCAGCCAGGTAGAGGAGGCCTTGGTTCAACAGAAACCTGGGGTAGAGGAGGCAGGAGCAACCGCGCTTGACGCACACTATGCGCACGAGTTCCCATACGGAAAGATGTACGTGAGTTATCTTTTGGAGAAGGAACCCAGCATGTACCCAAATTCAGTGCGACATCCCAGCCTAAACTTGAACCATCAGAACTTTGTCCCCGCACCTCCACAGTATTCGGATTTCAGCGGATACCACCACGTTGCTGGGATTAACAATGACCCTCACCACAGCCAGACCGGGGCCTGGAACCCCGCTTACCCGCCGAGCCGGGAAGAGTGGTCACCCTATGGGCCGGGGACAGGACCGTCCACATCTAATCCGGGGCCAATAGGCTATAGTCCCCCAGAGTTCTCTCCAGTCCCACAATCCGGGCTTCTCCCGTCTATCAACTCATCTGTTGGGCAGCTGTCTCCCAATTCTCAGCGCAGAAACCCTTATGATTGGATGAGGCGGAGCGTACCACCGGCAAATTCAGGTGGTAAGACAAGAACGAAAGACAAGTACCGGGTGGTGTACACAGATCACCAGCGGTTGGAGCTGGAGAAAGAGTTCCACTATAGCCGCTACATCACCATCAGGAGGAAAGCAGAGCTGGCCACGTCTCTCAGCCTCTCAGAACGACAGGTAAAAATCTGGTTTCAGAATCGGCGTGCCAAAGAGAGGAAAGTGAACAAGAAGAAGATGCAACAGCCTCAGCCTGCGTCCACAACAACACCTACTCCCCCAGGCTCTAGCATGCCCGGCAACGTTGCCATGGTGACCAGCAGCAGCGGCGGCTTAGTGTCTCCGTCTATACCAATGACTATCAAAGAAGAATACTGAGGACGATGGTCTGACGTGATGGGGAAAAAAAATACTTTGGTCCAAATCTAACCTGCAATAGTGACCCCGCCCCCCGGTCAACAGCCTGAGCAACATGGGGTCAAATGCAGGAGTCAACAGCTCCAAAGACAGACAAGAAATATAGACTTGCTGCTGTTTCCTTCGcttctgtaaaaaaataaataataataataacaaacgTCTAAAGGACAAGATAGACCGACACGAACGTCCGGCCATGCGCAGtagatcacctgctgggtgtcgaaaAACTATGGCGAATTCAATTCGCAGAATCATCGGGAAATAAACAGAAAATGGCGGCCCATGTGCTGTGGTTGAAGGCGATAGGACGGCCACCCGCTCTGCACACGTTCGCGTTGGTCTGTCTTGTCCAAAAGGGAGACAATGAACAGAGAAAAAGAACTGCTATAAacatatatagatattaaactgtTGTATTTCACTGTTATAATGGCTTCTACTGTTTCTGTTGTTGATATCTCTTCTGCTCTGCCCATCACATACTGGCAATACTTGTAAATGGTTCTGATTCCAAGCCAGAATAATAATAAGTGTATATTTTTTAAGTCATTTGTATTAAAAGCTTTATTGTCAA
>XM_036933296.1
ACCGGACATGCGTAATGTCAATGTTCAACATCCTGTCCACGTGTCCCGGAAAACAAGTTGATTTGTTGTATATGTAAGAAGAAAATAACCCATGGAGGCGAAGGACCTTTACATCAAACCAGGTAATCAGGAGCGGGGCTGGAATGACCCTCCACAGTTTTCCTATGGTTTGCAGAcagcagcacaaggtgcacccaAGAGGACCCCTCTCAACAAGAGAGTGCCCCCACCTCAACTCACAGGATCCCCTTGTCCTGTCCCAGGAGATTTTCCTTCCGCAACAGCTCCAATGACTCCTCCTACCAACCCACTGGCCCCTCCATGTAGTATGAACACGCCCCCTCGTCCATGTCCTGTCGCAGCCCCTCCTCTTGGTGGGGTGATGGCCACACCTCCACCACCTTTCCCTGTGGTAGAGCACACAGACTCTGCCAGTAGCCAATCAGAAAATGAGCCAGATGTAGACGATGTAGTCACTCTTCTCAACTGGGCACTGACAGCTTGTAGACACACAGTCAAAAAacaggtgtgtaatgatgtggCGAAGCGTCTGAAGCTCTTTGAGGACATGTGGAAGTCTGGGAAGCTGTCACTTCCTGTTAGGAGAAGAATGATTGGACTGGTGCAAGGTGGTAAGACAAGAACGAAAGACAAGTACCGGGTGGTGTACACAGATCACCAGCGGTTGGAGCTGGAGAAAGAGTTCCACTATAGCCGCTACATCACCATCAGGAGGAAAGCAGAGCTGGCCACGTCTCTCAGCCTCTCAGAACGACAGGTAAAAATCTGGTTTCAGAATCGGCGTGCCAAAGAGAGGAAAGTGAACAAGAAGAAGATGCAACAGCCTCAGCCTGCGTCCACAACAACACCTACTCCCCCAGGCTCTAGCATGCCCGGCAACGTTGCCATGGTGACCAGCAGCAGCGGCGGCTTAGTGTCTCCGTCTATACCAATGACTATCAAAGAAGAATACTGAGGACGATGGTCTGACGTGATGGGGAAAAAAAATACTTTGGTCCAAATCTAACCTGCAATAGTGACCCCGCCCCCCGGTCAACAGCCTGAGCAACATGGGGTCAAATGCAGGAGTCAACAGCTCCAAAGACAGACAAGAAATATAGACTTGCTGCTGTTTCCTTCGcttctgtaaaaaaataaataataataataacaaacgTCTAAAGGACAAGATAGACCGACACGAACGTCCGGCCATGCGCAGtagatcacctgctgggtgtcgaaaAACTATGGCGAATTCAATTCGCAGAATCATCGGGAAATAAACAGAAAATGGCGGCCCATGTGCTGTGGTTGAAGGCGATAGGACGGCCACCCGCTCTGCACACGTTCGCGTTGGTCTGTCTTGTCCAAAAGGGAGACAATGAACAGAGAAAAAGAACTGCTATAAacatatatagatattaaactgtTGTATTTCACTGTTATAATGGCTTCTACTGTTTCTGTTGTTGATATCTCTTCTGCTCTGCCCATCACATACTGGCAATACTTGTAAATGGTTCTGATTCCAAGCCAGAATAATAATAAGTGTATATTTTTTAAGTCATTTGTATTAAAAGCTTTATTGTCAA
>XM_021618899.2
ACCGGACATGCGTAATGTCAATGTTCAACATCCTGTCCACGTGTCCCGGAAAACAAGTTGATTTGTTGTATATGTAAGAAGAAAATAACCCATGGAGGCGAAGGACCTTTACATCAAACCAGGTAATCAGGAGCGGGGCTGGAATGACCCTCCACAGTTTTCCTATGGTTTGCAGAcagcagcacaaggtgcacccaAGAGGACCCCTCTCAACAAGAGAGTGCCCCCACCTCAACTCACAGGATCCCCTTGTCCTGTCCCAGGAGATTTTCCTTCCGCAACAGCTCCAATGACTCCTCCTACCAACCCACTGGCCCCTCCATGTAGTATGAACACGCCCCCTCGTCCATGTCCTGTCGCAGCCCCTCCTCTTGGTGGGGTGATGGCCACACCTCCACCACCTTTCCCTGTGGTAGAGCACACAGACTCTGCCAGTAGCCAATCAGAAAATGAGCCAGATGTAGACGATGTAGTCACTCTTCTCAACTGGGCACTGACAGCTTGTAGACACACAGTCAAAAAacaggtgtgtaatgatgtggCGAAGCGTCTGAAGCTCTTTGAGGACATGTGGAAGTCTGGGAAGCTGTCACTTCCTGTTAGGAGAAGAATGATTGGACTGGTGCAAGAGTTGAAGAGTTGTAACTGGGACGCTGCTGATGAGATCCACCGGGCTCTGATAGTGGACCATGTTAACGAGGTCGGTCAGTGGATGGTGGGGGTCAAGCGTCTCATCGCTGAAACACGCAACTTAAACCCAGACCTCCTGCACACACAGGAAGTAGACCAGAGTCTAGACACCAGCAGCGCTGGTAACTCTGACTAGATCAATAATGACACTTTTGGAACTTTTCTATTCGGTTGTGGAACCATGAGGACTCTCGGTCGTCCATGTGAAAAGCCATTGAAATTCAACTTTTAGGCTTACTCTCTCTTTTGCTTTCGTATGTGGAGATTCCACATATTTTGACATGGTTTTCCTGTAATTATTCAATATGCATATACATTTTTTGGGACTTTTTTTAATGATTTGCCTTTGATTGCAGTGTATTGCTTTAACCGAGCTCCACCAATTCTGACAATACAAAGATGCCGTTACCTCTGTTTTATGTCGATCGTTTACGTTTGATACAGCCTTTCCCCTGTTGTGTCTTGTTTGGTTAAAGTGCTTAAATCAGAAGTGTCAGTAATGAAACATTTTATTTGGATCGTTCTTTCTTCAAAATACTCTATAACCTCCCTTGGACAGCCTTGTAAACAGTATTTTACTGGAGCTAAGATTGCTTTAATTGTATGCAAGGTCCAATGTATTTTTCCTAGTTTAGCCTACAGTTTTCAATGACTTATCATCCCCCATGTACATAATCATAAGAGCAATAAGAATGTTTTAAAGACTGTGGTCTGCTTCTGTTGACGGTGGCATTGCATTACATGTGTATCATACACGATGAGACCAAATAAAGCTGATTTGTGATGGAAGTA

Function

NR:

description
PREDICTED: steroid receptor RNA activator 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933297.1 False 1515 mRNA 0.49 3 49141750 49147606
XM_036933296.1 False 1595 mRNA 0.48 6 49141750 49242962
XM_021618899.2 True 1482 mRNA 0.45 5 49236022 49242962

Neighbor

gene id symbol gene type direction distance location
LOC110534172 LOC106602940 coding downstream 233777 48881449 ~ 48907973 (-)
LOC110534171 LOC106602941 coding downstream 263873 48854852 ~ 48877877 (-)
dacha dach2 coding downstream 346430 48666706 ~ 48795320 (-)
alg13 LOC106602945 coding downstream 507148 48626002 ~ 48634602 (-)
LOC110534163 atg4a coding downstream 596812 48536413 ~ 48544938 (-)
LOC110534182 LOC106602929 coding upstream 194 49243156 ~ 49275989 (-)
LOC110534186 LOC100194652 coding upstream 59455 49302417 ~ 49309197 (-)
LOC110534187 NA coding upstream 70448 49313410 ~ 49318075 (-)
LOC110534188 LOC106602927 coding upstream 75636 49318598 ~ 49425142 (-)
LOC110533138 NA coding upstream 195082 49438004 ~ 49443736 (-)
G898032 NA non-coding downstream 19876 49121485 ~ 49121874 (-)
G898012 LOC106602935 non-coding downstream 37932 49100638 ~ 49103818 (-)
G897971 NA non-coding downstream 121311 49019478 ~ 49020439 (-)
G897965 NA non-coding downstream 136130 49005394 ~ 49005620 (-)
G897962 NA non-coding downstream 141284 48999892 ~ 49000466 (-)
G898107 NA non-coding upstream 33271 49276233 ~ 49276463 (-)
G898114 NA non-coding upstream 39052 49282014 ~ 49283140 (-)
G898118 NA non-coding upstream 44769 49287731 ~ 49287964 (-)
G898119 NA non-coding upstream 45996 49288958 ~ 49289477 (-)
G898122 NA non-coding upstream 49608 49292570 ~ 49292890 (-)
G896841 NA other downstream 1152674 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 1908704 47203241 ~ 47234608 (-)
G894917 NA other downstream 3223411 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 3391419 45747090 ~ 45751405 (-)
G899409 NA other upstream 913230 50156192 ~ 50156902 (-)
G899421 NA other upstream 939434 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 1222505 50463950 ~ 50482534 (-)
G899727 NA other upstream 1478024 50720986 ~ 50721603 (-)
G899739 LOC106602890 other upstream 1500196 50743158 ~ 50750233 (-)

Expression


Co-expression Network