LOC110534180 (LOC106602932)


Basic Information

Item Value
gene id LOC110534180
gene name LOC106602932
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49218199 ~ 49226581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618898.2
ctcccAGTCTGGAGAGGCGGTGGCAGCTACtcccaaaagagagagagagtgaaagggagagagagaaaggagggcaCTCTGCCGAGGGAGCCTGCCTGCTGTCACATGTGTCTGCGCTCACTTCCTCTGTACTCGGGCTTCACTGGAGACAGACACAACCCTACACTCTCTCACCCCATCTGGACCTGCAGGAGCCCCTATGGAATCTGGCCTCTCAATCTCTACACCTCTTTTCTGATTAAGATCATCTACAAGGATCTGATTCCAAATACAAAGCCTTCAGAGGGAAACTCAAGGGAGTAGCGATGGAAATACTTGGAATGAAACAATGAAAGTGGTCTCACATGCTGTACGAAGTGAAAGAAAATACTTCCTGGAGGAAAATGCTGTGTTTGAAAGGCACTCTACGGGGCTCATCTTATCTCAAGGTCAGttcctggctaaggaacgaggagATCCTTGTGCTCTGTGGGATGAGAGTTCAACTGTGGGGCATTAGCTGATCCTTCATCATCTCCCCCTCGTCCTCCTCCCGCTCCCCCTTTCATCCCAGACACACCATGTGGATATTATCTTTAGTCCTTTGGATTCTCAATGTCACCAATCTCACTCGTGGTTATGACTATGATGAGTACCCGGGTGAGGAGGACACAAAGGCCCCACTGGTTGGCGAAGGTATTAGTGGTTTGGACACCGTCTCCAATGTGGACGAGCTGGTGGAGCTGTTGTACCCAGAGTACAGTCTGGTGCAGCACTGCCTACGTAGGAAAGCCTTGcgcacctcccctcctctccatgcTGAAGACGATATCTGGGCCTGGGGCAAGCCCAGGGAGCTGGCACTGGTCAAGTCTgacagcagcattgaagTCATTCTGGAGGAGATCCAGCGTACCATGTGTACTCCTCGGGAGGTGTGTCTGGAGGTGTCTAAGGAGTACCCGGAGAGCACCAGTCACTTCTACGTGCCtcgctgtgtgtctgtgcacCGCTGTGGGGGCTGCTGTCCCCAGGAGGGTCTGTACTGCACCAACACCAGCCACATCTACATCAACAAGACGCTGGTGGAGTTGTCTCACCGTGACCGCTCTATGGTGATGGTGGCGTTCGTCAACCACACGTCCTGTGAGTGTCTGTCCAAGAGGCCCCTGCACTCCGTCATCAGGAGGGCCGCTGCAGCTCACCTCACCGTgTGTTCCCCGCCAGATGTTCCCTGCAGTACAGGACTGGTCTGGGACCCCACCGGCTGCCTGTGTGTTCCCATGGACACAAGCTCCTtctcagagagagagctagAGCCCCTAGAGTCAGCCTTGCTGGAGCTGTGTGGCCCCAACAAAGTCCTGGATGAGGacagctgtgagtgtgtgtgtcagaacggTCTGACGGAGGCCAGCTGTGGGCCAGGCTGGCGTCTAGACCAAGAGTCCTGTgagtgtctctgtgaggaccagcCCGGCCCAGGGACCTGCCCACCCAACCAACGCTGGGACCCAgatctgtgtggctgtgtgtgccGGGCAGAGTGCCCCCGTAGTCAGCCTCTCAACCCAGAGACGTGCCTGTGCCAGTGCAGGGAGAGtcctcacacctgcctgctgcaaGGCAAGAGGTTCAACGCACACAATTGCAGCTGTTACCGGCTGCCCTGCAGAAAGCCACACAAGAACTGTCCAACTGGCTTCTACTACAGCCACTACGTCTGCCAGTGCATACCCAACCACATGAGGTCAGAGGAGTGGAACTGACAAAGCTGGTGTCACTAGCACTGGTGCCAAACTGCAATGTACTGTAACTGTATGGTGAAATAGAGCAGAAATGAAGGCTGACCTGACCACAACCATTGTCCACATGGGCCGGAATAGAGAAGAAGGTGTGGCAGAGAGGACACTGACCAAATGGTATTCTATACTCAACaataatataaacacaacatgtaaactgttggtcccatgtttcatgagctgaaataaaagatcccagaaatttga

Function

NR:

description
vascular endothelial growth factor C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618898.2 True 1991 mRNA 0.54 7 49218199 49226581

Neighbor

gene id symbol gene type direction distance location
LOC110534179 LOC106602933 coding upstream 6069 49189943 ~ 49212130 (+)
LOC110534178 LOC100380851 coding upstream 36439 49160630 ~ 49181760 (+)
LOC110534177 LOC106602935 coding upstream 114379 49029563 ~ 49103820 (+)
LOC110534176 LOC106602937 coding upstream 224266 48988339 ~ 48993933 (+)
LOC110534174 LOC106602938 coding upstream 237671 48979532 ~ 48980528 (+)
LOC110534184 LOC106563731 coding downstream 51045 49277626 ~ 49282746 (+)
LOC110534189 LOC106602925 coding downstream 200204 49426785 ~ 49432958 (+)
rgs14b LOC106602924 coding downstream 224287 49450868 ~ 49472529 (+)
cnot6a LOC106602922 coding downstream 378652 49605233 ~ 49618387 (+)
LOC110533139 LOC106602921 coding downstream 434299 49660880 ~ 49720570 (+)
G897822 NA non-coding upstream 301 49217660 ~ 49217898 (+)
G897790 NA non-coding upstream 31596 49185046 ~ 49186603 (+)
G897797 NA non-coding upstream 60255 49157707 ~ 49157944 (+)
G897796 NA non-coding upstream 60651 49157347 ~ 49157548 (+)
G897789 NA non-coding upstream 66927 49151020 ~ 49151272 (+)
G897827 NA non-coding downstream 8443 49235024 ~ 49235581 (+)
G897848 NA non-coding downstream 58633 49285214 ~ 49285415 (+)
G897851 NA non-coding downstream 60456 49287037 ~ 49287325 (+)
G897854 NA non-coding downstream 64818 49291399 ~ 49291656 (+)
G897244 dach2 other upstream 541134 48676257 ~ 48677065 (+)
G896217 NA other upstream 982583 48235182 ~ 48235616 (+)
G896043 NA other upstream 1307224 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 2001128 47216407 ~ 47217071 (+)
G895652 LOC106603032 other upstream 2013357 47202925 ~ 47204842 (+)
G898894 LOC106603005 other downstream 808409 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3223637 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3306147 52532434 ~ 52542498 (+)

Expression


Co-expression Network