LOC110534189 (LOC106602925)


Basic Information

Item Value
gene id LOC110534189
gene name LOC106602925
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49426785 ~ 49432958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618906.2
AGATGCTTTTTTGCTGCATTGCATGCTGGGAAGCAAACTTTTTGAAAATGGCGACATCTTTAGGAGCTAATATTTACAACAGACAAAATTGGGAAGACGCGGATTTTCCTATTCTCTGCCAGACATGTCTTGGAGAGAATCCTTATATTCGAATGACCAAGGAGAAATATGGCAAGGAGTGCAAGATATGTGCCAGGCCCTTCACAGTGTTCCGATGGTGTCCTGGGACCCGCATGCGATTCAAAAAGACAGAGGTGTGCCAGACGTGCAGTAAGATGAAGAATGTCTGTCAGACGTGCCTGCTGGATCTAGAGTATGGCTTGCCAATACAGGTCCGAGACACTGGGCTGTCAATCAAGGACGACGTGCCAAAATCCGATGTGAACAAGGAATACTACACTCAGAACATGGAAAGAGAGATAGGGAACTCTGATGGTACACGGCCAGTGGGTCTCCTGGGTAAGGCCCCCAGCTCTAGTGACATGCTGCTGAAGCTAGCCCGCACCACGCCTTACTACAAGAGGAACAGACCACACATCTGCTCCTTCTGGGTGAAGGGAGAATgtaagagaggagaagagtgtcCCTACAGGCATGAGAAGCCAACTGATCCTGACGATCCCCTGGCAGACCAGAACATTAAGGACCGTTACTATGGTATCAACGACCCTGTGGCTGACAAGCTGCTGAAGAGGGCCTCCACCATGCCTAGACTGGATACGCCAGAGGACAAGTCCATCACTACGCTGTATGTGGGGGGGCTCGGAGACTCCATCACTGACTCAGAGCTCAGGAACCATTTCTACCAGTTTGGGGAGATCCGGACCACCACCATCGTTCAGAGGCAGCAGTGTGCCTTCATCCAGTTTGCCACCCGTCAGGCTGCAGAGTTGGCTGCTGAGAAATCCTTCAACAAGCTCATTATCAAAGGTCGCAGACTCAACGTCAAGTGGGGCAGGTCCCAGGGAGCgcgggggaaggagggaagggagagggaaggggtgacTGAGATGGGGATGAAGCTGGAGCCAGTACCTGGACTGCCTGGAGcGCTACCTCCGCCACCTGTGGATGAAGACGCCCCTACCAACTATTTCAACCTGGGCCCTAACTCAGCCCCTCCTGTCATGAACATCAGTCTACCCCCACCCCCCGGCGTGGCTATGCCCCCTCCAGGCTTTGGCCCACCTATGTTCCACTCGATGGACCCCATGGCGATACCCCATTCCATTGGGATGAGGCCTCCTGGCCATGTCCACTACCCCTCCCAGGATCCACAGCGCATGGGTGCACACGCCAGTCGTCACGGAGGCTCCTAGGCCCTACTGGTTATAGTGATTGCTGTTTTTAATGACATTTTGATTTAGTCTTATACCTATTCCTTACCAAATGACCAATTCCACCCTATAAACAAACCAGGCACAGTGACTTTAGACATGTTTCACCGATGTGAGATCCGTGTTCTACGGGTTATAGAGGACGACCCAGCAAGGTCTCGCTGGTTTGGAAAAGTGAGTTCTGAACAGTGTAATTTTTAATGGTTCCTTAAACCTTCCCCCATTTGAACCTATGTTCTAACTaagggttggaaccggttcatgGAGCAGAACCGAAAATAAATTATTTGAGGAAAAGAACCCCGAACTTGAAAACGTGATCTATAGTGGTCCAGAACAGTCCACAAACATCGCAACGAAgcacctatgcaaagccctcTCTGTCACTCAATCTTATTCTAGCGTCTGCCTTCCAGGTGGAAATCGTtgccagtgggtgtgtgtgttggctacttgcccctcccctctgaagcataggttactgtagtctactgacgaCGTTACACGCATcattcagaaattagggagagatgtttatttaaagaatgaattTACTTTTTCAATGATAGTTAAGGATACTATTGTTTTCACAcctcacattggatttattaactacaaaaaggtaagatgTGTTTTTCATTCTTGTTCTGCTCTGCACACACATGAGCTTGTTAGCTAATGTTTGATATGGTCCAACATTAAACCAACTCGGAAGTTCAATGACA
>TU1021565
ggggtgacTGAGATGGGGATGAAGCTGGAGCCAGTACCTGGACTGCCTGGAGcGCTACCTCCGCCACCTGTGGATGAAGACGCCCCTACCAACTATTTCAACCTGGGCCCTAACTCAGCCCCTCCTGTCATGAACATCAGTCTACCCCCACCCCCCGGCGTGGCTATGCCCCCTCCAGGCTTTGGCCCACCTATGTTCCACTCGATGGACCCCATGGCGATACCCCATTCCATTGGGATGAGGCCTCCTGGCCATGTCCACTACCCCTCCCAGGATCCACAGCGCATGGGTGCACACGCCAGTCGTCACGGAGGCTCCTAGGCCCTACTGGTTATAGTGATTGCTGTTTTTAATGACATTTTGATTTAGTCTTATACCTATTCCTTACCAAATGACCAATTCCACCCTATAAACAAACCAGGCACAGTGACTTTAGACATGTTTCACCGATGTGAGATCCGTGTTCTACGGGTTATAGAGGACGACCCAGCAAGGTCTCGCTGGTTTGGAAAAGTGAGTTCTGAACAGTGTAATTTTTAATGGTTCCTTAAACCTTCCCCCATTTGAACCTATGTTCTAACTaagggttggaaccggttcatgGAGCAGAACCGAAAATAAATTATTTGAGGAAAAGAACCCCGAACTTGAAAACGTGATCTATAGTGGTCCAGAACAGTCCACAAACATCGCAACGAAgcacctatgcaaagccctcTCTGTCACTCAATCTTATTCTAGCGTCTGCCTTCCAGGTGGAAATCGTtgccagtgggtgtgtgtgttggctacttgcccctcccctctgaagcataggttactgtagtctactgacgaCGTTACACGCATcattcagaaattagggagagatgtttatttaaagaatgaattTACTTTTTCAATGATAGTTAAGGATACTATTGTTTTCACAcctcacattggatttattaactacaaaaaggtaagatgTGTTTTTCATTCTTGTTCTGCTCTGCACACACATGAGCTTGTTAGCTAATGTTTGATATGGTCCAACATTAAACCAACTCGGAAGTTCAATGACATTCAAAGTTTCTCCATAGAAGCCGTtcctccgtaggtataattctgttggcctaattcagataatgtatgtcataacaagatgcccaggGCTTCAAGGCAagcttcctccatcctctctctcctcaccctcaaaTGTTCTGTTGCATTTCACGCCATGCACACAGtgtgtgtttatctttcattatGATTAAACCATGCTGTTACGGCAAAACACTATTTGCGCTTAACAACTTTCCTGTACAGATTAAGTCGCTTACTCGCTCCAcagcaagctgctctatccgcactgattggtgaagaAATTAAATGTTGAGCTAAATGTaaacaaaaaatgtatatttcagaggtttaaaaaggaGTATGAAGGAGCTATATGTTGGAACCGGTTCAgcactttattttgctggtcagAACAGTGAAACGGGATGAAAAAAAGAATGGTTGTGTTCAAAAATGAAACGATTGTACAATTATTTATATTCCAACCCTTGGTTCTAactctgatggcttgtagatttGAAAGGAGGGAGGTTTTATGTTTGCAAAATGTGCATATTGTACAAAACATTTCTTATACAAGAAAATGTCAAACTATTTCCCTTTGTACAAAATTATTCTGTATATCATGCATTTTGTGAAGAATTGTCAGACGTTAAAGATGGAGTCCTCATTAGGGCAAACGGCtcctttatttattttgttgttgttgatgaaatGGAGGTGAGCACCGTGGATTTTTATGCAGTACATATTCTGCTCTATCGTGTGTGCAACAGTGTCAAAGGGGGGGGAGAAATGTTCattgtttgtatttttttgtggtaATATCCCAAACGGACATGGCAATTTCATCAAGTATTACAGCTTTAACGGTCTTCAGAAATTCCAATTGTTAAGACCATTTACTTCCAAGTGGTGGCACTATTATCTAAAGATTGCTGAAGTTGTCCATGTCTGTAGAACTGTAAATGTCTATGTTTTAATAGAACTGTGAAGTGAATGGTTGTCACATTTTAGCTTCATGAATATTATCCTTTCATTTGAAAAGTTATGTACATAGTTTACCAAGTTCTGTCCTTGATAAAGAATTACCTGGT

Function

NR:

description
pre-mRNA-splicing factor RBM22-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618906.2 False 2062 mRNA 0.49 11 49426785 49431860
TU1021565 True 2162 TUCP 0.42 3 49430399 49432958

Neighbor

gene id symbol gene type direction distance location
LOC110534184 LOC106563731 coding upstream 144039 49277626 ~ 49282746 (+)
LOC110534180 LOC106602932 coding upstream 200204 49218199 ~ 49226581 (+)
LOC110534179 LOC106602933 coding upstream 214655 49189943 ~ 49212130 (+)
LOC110534178 LOC100380851 coding upstream 245025 49160630 ~ 49181760 (+)
LOC110534177 LOC106602935 coding upstream 322965 49029563 ~ 49103820 (+)
rgs14b LOC106602924 coding downstream 19008 49450868 ~ 49472529 (+)
cnot6a LOC106602922 coding downstream 173373 49605233 ~ 49618387 (+)
LOC110533139 LOC106602921 coding downstream 229020 49660880 ~ 49720570 (+)
LOC110534194 LOC106602920 coding downstream 293991 49725851 ~ 49730277 (+)
LOC110534196 LOC106602919 coding downstream 313227 49745087 ~ 49753067 (+)
G897944 NA non-coding upstream 5717 49420717 ~ 49421068 (+)
G897941 NA non-coding upstream 9674 49416857 ~ 49417111 (+)
G897940 NA non-coding upstream 10398 49416187 ~ 49416387 (+)
G897936 NA non-coding upstream 14338 49412172 ~ 49412447 (+)
G897929 NA non-coding upstream 22103 49404459 ~ 49404682 (+)
G898229 NA non-coding downstream 41825 49473685 ~ 49473905 (+)
G898231 NA non-coding downstream 43356 49475216 ~ 49475768 (+)
G898247 NA non-coding downstream 53313 49485173 ~ 49485391 (+)
G898267 NA non-coding downstream 75872 49507732 ~ 49507998 (+)
G898316 NA non-coding downstream 105612 49537472 ~ 49537967 (+)
G897244 dach2 other upstream 749720 48676257 ~ 48677065 (+)
G896217 NA other upstream 1191169 48235182 ~ 48235616 (+)
G896043 NA other upstream 1515810 47909716 ~ 47910975 (+)
G895658 LOC106603032 other upstream 2209714 47216407 ~ 47217071 (+)
G898894 LOC106603005 other downstream 603130 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 3018358 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 3100868 52532434 ~ 52542498 (+)
G902707 NA other downstream 4084247 53516107 ~ 53519788 (+)
G902840 LOC106602714 other downstream 4238260 53670120 ~ 53674811 (+)

Expression


Co-expression Network