LOC110534194 (LOC106602920)


Basic Information

Item Value
gene id LOC110534194
gene name LOC106602920
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49725851 ~ 49730277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618912.2
cgCTAATGACAGCCAGTGTCTTCTTTTTGGTTGCTTTGTGGAACAGAATGTGGTCGACCAATTACTTTGCTGGGTGTGTTTACTATTCTGGTCAGTTTGCTTTTGCTCCTCACGCTCAGATgaccataccagactgtcatgtTGAAGGTGAGGATGCAGTACACACTCTCCAGAACATCCTGGCTGACCCCAAACCCCCTTTAATTTCCTgattaagaaaaaaaaatacagtctGCATTCTCTGTAAAACTCAGCTTGTTACCAATTTGTGTCCCTAGATATTTAAAACACTTAACCACCCCCTCTGGTTGGTCGTTCAGAGAGAGTGGTTGGGACATTGGTAAGTTGTTGCCGTtgatgatcagctcctttgcctTTTCCACATTGATGTGGAGGGCACTTGACCGACGCCATTCTTGAAGGTTGTTTGTCTGTTTAAAATAGCTGTCCGCATCTGACGTAGCATCTTTTTTTAAAAAGAGTCCTACCAGAGCCATGTCATCTGCATACTTAAAAAGGCTCACATTGTTTCCTCGGATCTTCATCTCGTTAGTATAGATAGAGAACAACAACAGTGAaaggacacacccctgggggtACTCCTGTGTTCTTGCGTCACGACCCTGTGTTGAATCATGGGGACcattatcctctcctcctcatcctgttctcctctcatcttcctctCCACGACCTCATCCTCCTCTAACTGCCGCCTCTTTCCTCCCCCTGCCTAACCTcctactctcttctctctttctctttcttgccGCTCCACTCACTCTGCGTACCTTCCACACTCTTACTCTGTACATCAATAAAATCCATTTGGCACATGATTATGCTCAGCCACAAAATGGGATGGAGGTGCTATTTTTAGCCGGCTacgggaggagagggaggccatgggagcgagagagagagaaagggggtgggATAAAGCGTTCTTTTCGTTCTGTAGCTGTATGTCGGTCGGAGACACAGAGCTCTGTGGCAGCTTGGCTAGAGACAGCAAGCGGGGTGAGATCTAACGAAGACGAGCAAACGACACCACCTGAAACACAAATAAGACACAGGCATGCGACCCCGCTCCAGACTCCTGGCTAAGAGGTGGCTGCCCACCATCAGGGAGGGCTATGAGGAGCTGGTCCAGGACATGAACCAGGCCAACAGCCGCCACCTCCCTCCCCATGGTCAGGCCCACTCACTGTCTACCCATGACTACTTCCTGTCCATCTGCCAGCTCGCCCGACCAACCTTCCCCCAGGGCGAACCTGACTGTGACATCCTCACGGTGGGCGCTCTGACCTCCCTGAGGCCTTGTCTGAGGCTGCACAAACTGAGGGACCCTGTGCCACCCTGTCTGCCTCTGATCTCTAAGGTCAGCCGCCACACACAGTTAGAGCAGGAGGAGAGTCAGAATGAGTGTAGTGGCCCAGAGAGAGCGGTGGATGTCAGTTCACGTCAGACCTCCAGTAGGGTTGTCCCCAGTGTCTCTGACCCCCTGGAGTTCCTCTACGGTCACAGGGAAGGACTCCTCTCAGCCGCCTGTCGCGCCCATGACTCACAGGGCCGCATGGGCGAAGGGAGTCAGAGTGTGACGCAGAGTCGACCACAACCCCCGGTACATGCCGACAGTTTCCCCCGCATGTGTTCCTCGCCCCTGACCCAGCGCAAAAACAGCTGTCGTGAGCTATGGCTGGTGGACCCCACTGACCAAAAGAAGCCAAACCCTGACCCTGCTCCACCAGAGACATCCTCATCAGACCAGCAGAAACCTGATGCCTCCAGCTCATTCTCATGGAGGTTCCAGAACAACCCAGACAGGGCGCCTGCAGGTGAGAGGGGGAAGTGCACTCGCTACATGGACCATCACACAATGGTGTCACACTGGATCGCTGACTGTCGCTCGGCCTGGAGAGAAGCCAGAATCAGGGCGTGCATGCTTCCGGCCATCGCAGAGATGTAAACTTGTGTAGCGTTATTAATCCCCACTCTTAAGTATTGTACATTATGGATCCTTGATGTACTATGTACTGCTTAATTGGTACATTTGGACAATGCAGGTCCATACGGTAACATGTACAAATCGCGTTTTCATGCCTGACCTTtttgtacagtatatagtgtaaGACATATTGTAGGCTAGCGTATGCCTCACACATATCACAGTGAGTGGAATGTTGACAGTGCTTAGAAGACATCAGTATTAGGGTAGCCTCGTAAAGTGGAACAAGACAGGATTTTGGAAGGATGATCACGCGAGACAAGTGTTCGGGTGAATAAAGATGTGTGGAAAAGATGCGGAATTTGCTATAAGGATTATGCACAAAGACATATGACTAAGAAAAATGACAGATCATAATCTTTACTATGGAGTGAGTGATATCTCACTCCATTATTGACGAATGATAACTCTGGTCAAAGAAAACATTCTACTCGTCATAACAATGGGAAGGGTACAGCTTTAGAATCAGAACGGAGTGATCCTATAGCTAGTTCAGGCTCCCTGTAGGAGAGCATTCAAACTCAGATTATTCTCAGTGGTTCTGAAAATGTCTCTTGCGATTTCCTCTCTCATGTATGATATGAGTTATGCAATGACAATGGAGATCGGTGGAAAACTGATGAGTCTATTGAAAACTTCTACTAAGTAAAGCCACGATGAAACAGTACATCATATTCACACTGAGTGAAACAGCATGTGACATTGTAGTATATTATTTTTTGATTATGTTTAATGGCCCTCCATGACAGTACAATGAACTCTGTGTCAAAATATACAAATGGAAAGACAACAGTATAATTGACTTGTAAAAGGTTGACAATACAATCGTTTGATCGTGTATGGTATGGCTTTTGTACCTCTGTCCATTGTTGGCTCGTAATCTAATAAAATGATGTGTTTTACCCTGC

Function

NR:

description
uncharacterized protein LOC110534194

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618912.2 True 2916 mRNA 0.48 2 49725851 49730277

Neighbor

gene id symbol gene type direction distance location
LOC110533139 LOC106602921 coding upstream 5281 49660880 ~ 49720570 (+)
cnot6a LOC106602922 coding upstream 107464 49605233 ~ 49618387 (+)
rgs14b LOC106602924 coding upstream 253322 49450868 ~ 49472529 (+)
LOC110534189 LOC106602925 coding upstream 293991 49426785 ~ 49432958 (+)
LOC110534184 LOC106563731 coding upstream 443105 49277626 ~ 49282746 (+)
LOC110534196 LOC106602919 coding downstream 14810 49745087 ~ 49753067 (+)
clk4b LOC106602917 coding downstream 70390 49800667 ~ 49810924 (+)
LOC110534200 LOC106602916 coding downstream 81152 49811429 ~ 49954007 (+)
LOC110534202 LOC106602915 coding downstream 237867 49968144 ~ 49989740 (+)
LOC110534204 LOC106602914 coding downstream 269368 49999645 ~ 50014637 (+)
G898519 NA non-coding upstream 428 49725125 ~ 49725423 (+)
G898368 NA non-coding upstream 146190 49579162 ~ 49579661 (+)
G898355 NA non-coding upstream 154539 49571065 ~ 49571312 (+)
G898353 NA non-coding upstream 156218 49569126 ~ 49569633 (+)
G898568 NA non-coding downstream 60797 49791074 ~ 49791304 (+)
G898571 NA non-coding downstream 62775 49793052 ~ 49793358 (+)
G898574 NA non-coding downstream 67705 49797982 ~ 49798281 (+)
G898583 NA non-coding downstream 86397 49816674 ~ 49816912 (+)
G898585 NA non-coding downstream 90853 49821130 ~ 49821647 (+)
G897244 dach2 other upstream 1048786 48676257 ~ 48677065 (+)
G896217 NA other upstream 1490235 48235182 ~ 48235616 (+)
G896043 NA other upstream 1814876 47909716 ~ 47910975 (+)
G898894 LOC106603005 other downstream 304713 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 2719941 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 2802451 52532434 ~ 52542498 (+)
G902707 NA other downstream 3785830 53516107 ~ 53519788 (+)
G902840 LOC106602714 other downstream 3939843 53670120 ~ 53674811 (+)

Expression


Co-expression Network