clk4b (LOC106602917)


Basic Information

Item Value
gene id clk4b
gene name LOC106602917
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 49800667 ~ 49810924 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618919.2
GGTCGCCATTTTTGTTGAGTATTTTGAGTACTTATCAGTCAGTGGTCGTGACATAATTTGCAACCGTACTTGAAATATCGTTCCCTTAGCTTGGCTGGAAAGTACAGGGTCTTATTACAGAACTTGACTACCAGTTGTTTGAGATGCGGCGTTCCAAGCGCATGCGACACCCTGATGGCTGGGTTGATGAGTATAGCTATGAGGAGAAGCAGGACATTCGCAAACGGCAGAGGCGAAGTTCCCATAGCAGTGACCGGGAAAAGAGACCGAGGCGGTACCACCACGACAAAACATAcgaaagGTGTCACCTTGACTCTAAGAAGCTGGAGCGCAGAGCCCAGGAGCCCAGTGTGGAGCGAGAGAGCCATGGGGACAAGGAGAGGGATGGGGCCAAGGGTGAGACGTGTAAGGAGCGGAGGAACAGAGACTGGCACCACTACAGCAAATCCTCCGCACGCAGTGGCCGTAGCCACCAGAGCTGTCGCACACGACACCGCTCCCGCCGTCACAGCCAGGGGCGCTCAGACTCGagGAGTCACCGCAGGAAGAGATCCAGAAGTtttgaggatgatgaggagggtCACCTGATCTATCACAATGGACTCGTACTAAAAGCAAGATATGAGATTGTATCCACTTTAGGAGAAGGGGCTTTCGGGAAAGTGGTGGAATGTATCGACAACCCGAATGATGACACAAGGGTGGCACTGAAGATCATTAAGAACATTGATCGTTACCGGGAGGCTGCCATGTCTGAGGTAGAGGTGCTGGAACAGATGAACTCCCTGGATGACGAGAGAACCTTTGGCTGTGTGCGTATGCTGGACTGGTTCGATTACCATGGCCACATCTGCATTGTGTTTGAGCTTCTGGGTCTCAGCACTTTTGACTTTCTGAAGGAGAACGGCTTCATGCCTTTCACTGTGGACCAGATCAGACACATGGCCTACCAGATCTTCAGAGCTGTGTCCTTTCTCCATCGAAATAAACTGACCCATACTGACCTGAAGCCAGAGAACATTCTCTTTGTCAATTCTGACTATGACATGGAATACAATGCCAAAATGAAACGGGATGAGAGAACTTTGAAGAACCTAGATGTGAAAGTGGTGGATTTTGGTAACGCCACCTTTGACCATGAGCACCACACCTCTGTGGTCTCCACCCGCCATTACAGAGCACCGGAGGTCATCCTTGAGCTGGGGTGGAATCAGTCATGTGATGTGTGGAGTCTGGGCTGCATTCTCCTAGAGTACTATCTTGGGTTAACACTGTTCCAGACGCATGACAGCAAAGAACACCTGGCCATGATGGAGAGGGTTCTGGGGCCCATACCTGTCCACCTACTACAGAAAACTAAGAAGCGGCGGTATGTGCATCATGACCGGCTGGACTGGGATGAAAACAGTTCCTCAGGGAGATATGTGAGGAAGCACTGCAAACCACTCAAGCAATACATGTCCTCCAGGAGCTCAGACCACGAACAGCTATTTGACCTGATCCACAGTATGATGGAGTATGACGTGTCCAGGAGGCTCACCCTGGAAGAGGCCATCTGGCATCCATTCTTCCACCCcatgaggaaggagaggaaaaagTGACCCTGAAGACCACATCACTCACTACTCTACATTTCTCTACTCCAAGGGAGACTTCTATAGACTGCATCAGTCCGCTATCTATGAGATTATTACCCTTGTTTACATACCGATTGAGTTTACCTGCCTGCTTCCTTcagatttaatttatttaacttgTGAATCCTCTTGATCCCCTTTGATTTGTGAATAAATTTGTTTACTATGTTCTCAAAA
>XM_021618918.2
cagctcggggatttgaaccgttactagtccaacgctctaaccactaggctaccctgccgccactgTTAACGAGTTACGCTACTGATATGTCACAGCTAACTTTTATGTGTAGATTTTAAGCGATTTAAACAGCATCACACATACCAGCTAGCGTTTAGCTAGCATCTGTCCTGTATATCAGCCAATCATGGGTTAGCCTACTTCAGCTGTATTAATACATTTTGTACTGAAGTCGGAAATGAAGTATGTCCACAGTCCAGTCACATCTGACACGATATGAGACGTGACAAGCAGACAGTCAGGCTAGCTTTTCACCAGAGCCATGCCAGGGGCAGCGCGTTCCTTTCATTGCAGCTGATGCGGCGTTCCAAGCGCATGCGACACCCTGATGGCTGGGTTGATGAGTATAGCTATGAGGAGAAGCAGGACATTCGCAAACGGCAGAGGCGAAGTTCCCATAGCAGTGACCGGGAAAAGAGACCGAGGCGGTACCACCACGACAAAACATAcgaaagGTGTCACCTTGACTCTAAGAAGCTGGAGCGCAGAGCCCAGGAGCCCAGTGTGGAGCGAGAGAGCCATGGGGACAAGGAGAGGGATGGGGCCAAGGGTGAGACGTGTAAGGAGCGGAGGAACAGAGACTGGCACCACTACAGCAAATCCTCCGCACGCAGTGGCCGTAGCCACCAGAGCTGTCGCACACGACACCGCTCCCGCCGTCACAGCCAGGGGCGCTCAGACTCGagGAGTCACCGCAGGAAGAGATCCAGAAGTtttgaggatgatgaggagggtCACCTGATCTATCACAATGGACTCGTACTAAAAGCAAGATATGAGATTGTATCCACTTTAGGAGAAGGGGCTTTCGGGAAAGTGGTGGAATGTATCGACAACCCGAATGATGACACAAGGGTGGCACTGAAGATCATTAAGAACATTGATCGTTACCGGGAGGCTGCCATGTCTGAGGTAGAGGTGCTGGAACAGATGAACTCCCTGGATGACGAGAGAACCTTTGGCTGTGTGCGTATGCTGGACTGGTTCGATTACCATGGCCACATCTGCATTGTGTTTGAGCTTCTGGGTCTCAGCACTTTTGACTTTCTGAAGGAGAACGGCTTCATGCCTTTCACTGTGGACCAGATCAGACACATGGCCTACCAGATCTTCAGAGCTGTGTCCTTTCTCCATCGAAATAAACTGACCCATACTGACCTGAAGCCAGAGAACATTCTCTTTGTCAATTCTGACTATGACATGGAATACAATGCCAAAATGAAACGGGATGAGAGAACTTTGAAGAACCTAGATGTGAAAGTGGTGGATTTTGGTAACGCCACCTTTGACCATGAGCACCACACCTCTGTGGTCTCCACCCGCCATTACAGAGCACCGGAGGTCATCCTTGAGCTGGGGTGGAATCAGTCATGTGATGTGTGGAGTCTGGGCTGCATTCTCCTAGAGTACTATCTTGGGTTAACACTGTTCCAGACGCATGACAGCAAAGAACACCTGGCCATGATGGAGAGGGTTCTGGGGCCCATACCTGTCCACCTACTACAGAAAACTAAGAAGCGGCGGTATGTGCATCATGACCGGCTGGACTGGGATGAAAACAGTTCCTCAGGGAGATATGTGAGGAAGCACTGCAAACCACTCAAGCAATACATGTCCTCCAGGAGCTCAGACCACGAACAGCTATTTGACCTGATCCACAGTATGATGGAGTATGACGTGTCCAGGAGGCTCACCCTGGAAGAGGCCATCTGGCATCCATTCTTCCACCCcatgaggaaggagaggaaaaagTGACCCTGAAGACCACATCACTCACTACTCTACATTTCTCTACTCCAAGGGAGACTTCTATAGACTGCATCAGTCCGCTATCTATGAGATTATTACCCTTGTTTACATACCGATTGAGTTTACCTGCCTGCTTCCTTcagatttaatttatttaacttgTGAATCCTCTTGATCCCCTTTGATTTGTGAATAAATTTGTTTACTATGTTCTCAAAA
>XM_021618920.2
AAGCTGGAGCGCAGAGCCCAGGAGCCCAGTGTGGAGCGAGAGAGCCATGGGGACAAGGAGAGGGATGGGGCCAAGGGTGAGACGTGTAAGGAGCGGAGGAACAGAGACTGGCACCACTACAGCAAATCCTCCGCACGCAGTGGCCGTAGCCACCAGAGCTGTCGCACACGACACCGCTCCCGCCGTCACAGCCAGGGGCGCTCAGACTCGATGAGATTGTATCCACTTTAGGAGAAGGGGCTTTCGGGAAAGTGGTGGAATGTATCGACAACCCGAATGATGACACAAGGGTGGCACTGAAGATCATTAAGAACATTGATCGTTACCGGGAGGCTGCCATGTCTGAGGTAGAGGTGCTGGAACAGATGAACTCCCTGGATGACGAGAGAACCTTTGGCTGTGTGCGTATGCTGGACTGGTTCGATTACCATGGCCACATCTGCATTGTGTTTGAGCTTCTGGGTCTCAGCACTTTTGACTTTCTGAAGGAGAACGGCTTCATGCCTTTCACTGTGGACCAGATCAGACACATGGCCTACCAGATCTTCAGAGCTGTGTCCTTTCTCCATCGAAATAAACTGACCCATACTGACCTGAAGCCAGAGAACATTCTCTTTGTCAATTCTGACTATGACATGGAATACAATGCCAAAATGAAACGGGATGAGAGAACTTTGAAGAACCTAGATGTGAAAGTGGTGGATTTTGGTAACGCCACCTTTGACCATGAGCACCACACCTCTGTGGTCTCCACCCGCCATTACAGAGCACCGGAGGTCATCCTTGAGCTGGGGTGGAATCAGTCATGTGATGTGTGGAGTCTGGGCTGCATTCTCCTAGAGTACTATCTTGGGTTAACACTGTTCCAGACGCATGACAGCAAAGAACACCTGGCCATGATGGAGAGGGTTCTGGGGCCCATACCTGTCCACCTACTACAGAAAACTAAGAAGCGGCGGTATGTGCATCATGACCGGCTGGACTGGGATGAAAACAGTTCCTCAGGGAGATATGTGAGGAAGCACTGCAAACCACTCAAGCAATACATGTCCTCCAGGAGCTCAGACCACGAACAGCTATTTGACCTGATCCACAGTATGATGGAGTATGACGTGTCCAGGAGGCTCACCCTGGAAGAGGCCATCTGGCATCCATTCTTCCACCCcatgaggaaggagaggaaaaagTGACCCTGAAGACCACATCACTCACTACTCTACATTTCTCTACTCCAAGGGAGACTTCTATAGACTGCATCAGTCCGCTATCTATGAGATTATTACCCTTGTTTACATACCGATTGAGTTTACCTGCCTGCTTCCTTcagatttaatttatttaacttgTGAATCCTCTTGATCCCCTTTGATTTGTGAATAAATTTGTTTACTATGTTCTCAAAA

Function

NR:

description
dual specificity protein kinase CLK1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618919.2 False 1814 mRNA 0.49 13 49800667 49810924
XM_021618918.2 False 2028 mRNA 0.49 13 49801471 49810924
XM_021618920.2 True 1403 mRNA 0.50 10 49803021 49810924

Neighbor

gene id symbol gene type direction distance location
LOC110534196 LOC106602919 coding upstream 47600 49745087 ~ 49753067 (+)
LOC110534194 LOC106602920 coding upstream 70390 49725851 ~ 49730277 (+)
LOC110533139 LOC106602921 coding upstream 80097 49660880 ~ 49720570 (+)
cnot6a LOC106602922 coding upstream 182280 49605233 ~ 49618387 (+)
rgs14b LOC106602924 coding upstream 328138 49450868 ~ 49472529 (+)
LOC110534200 LOC106602916 coding downstream 505 49811429 ~ 49954007 (+)
LOC110534202 LOC106602915 coding downstream 157220 49968144 ~ 49989740 (+)
LOC110534204 LOC106602914 coding downstream 188721 49999645 ~ 50014637 (+)
LOC110534206 LOC106602913 coding downstream 268241 50079165 ~ 50080809 (+)
LOC110534207 LOC106603003 coding downstream 276345 50087269 ~ 50088380 (+)
G898574 NA non-coding upstream 2386 49797982 ~ 49798281 (+)
G898571 NA non-coding upstream 7309 49793052 ~ 49793358 (+)
G898568 NA non-coding upstream 9363 49791074 ~ 49791304 (+)
G898519 NA non-coding upstream 75244 49725125 ~ 49725423 (+)
G898583 NA non-coding downstream 5750 49816674 ~ 49816912 (+)
G898585 NA non-coding downstream 10206 49821130 ~ 49821647 (+)
G898620 NA non-coding downstream 54173 49865097 ~ 49865351 (+)
G898630 NA non-coding downstream 67406 49878330 ~ 49878539 (+)
G898645 NA non-coding downstream 82896 49893820 ~ 49894042 (+)
LOC110534189 LOC106602925 other upstream 367709 49426785 ~ 49432958 (+)
LOC110534184 LOC106563731 other upstream 518715 49277626 ~ 49282746 (+)
G897244 dach2 other upstream 1123602 48676257 ~ 48677065 (+)
G896217 NA other upstream 1565051 48235182 ~ 48235616 (+)
G896043 NA other upstream 1889692 47909716 ~ 47910975 (+)
G898894 LOC106603005 other downstream 224066 50034990 ~ 50037685 (+)
G901849 LOC106602874 other downstream 2639294 52450218 ~ 52475365 (+)
LOC110534253 hinfp other downstream 2721804 52532434 ~ 52542498 (+)
G902707 NA other downstream 3705183 53516107 ~ 53519788 (+)
G902840 LOC106602714 other downstream 3859196 53670120 ~ 53674811 (+)

Expression


Co-expression Network