LOC110534205 (LOC106603005)


Basic Information

Item Value
gene id LOC110534205
gene name LOC106603005
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50035811 ~ 50037679 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618925.2
tgcttctcctccctcctccacctcccccatcCATCCACTTCTCTCAGTAGCATCTATGGGCAGGTCATTGTTTTTGTGAAGAGCTTGAAGACACCTGTTCTACCATACGGAGACATCATCACCAGGTGActgctcccttccttctctcctgcCTACCCTGGGGTATAAAGGATCTCTGATTATGTGGCAGCATCACTTAGCTAcatcacacccccacacacagagcgagaaagagagagcgagagagcgagagagcgagagaggagtaCAAGGAAGAACACTGAACACAAAGAACCACTAAGAAGTTCCAGATTTGGAACAGAATCTTCTGTCTTTGATTAGAATCTCAGCTTGACTGAATCCTCTGTTAGTTCTAGAATTTGTATGCTGGATTCTGGAAGTTGAGAATCTCAGCAGGTTCGAAGAACTTCTTAGTTAAGTCACTTCCTCGTTCCTCCAGGAAGGGCAGGTGTTGGAGAGAGCCAGTCCAGGGAGCCAGCATGTCGATGGGCATGGAGATTGTGGGGATTGCCCTGGGCGTCATAGGATTCATCCTGGGCATCGTGGTCTGTGCTTTGCCCTTGTGGAAGGTGACGGCCTATATCGGAGCCAACATTATCACATCCCAGACCATATGGGAGGGCCTGTGGATGAACTGTGTGACCCAGAGTACGGGCCAGATGCAGTGTAAGGTCTACGACTCCCTCCTGGCCTTGCCCCAGGACCTACAAGCCGCCAGAGCCATGACAATCATCGCAATCACCCTGGGGATTCTAGGGGTGATGGTCTCCATCGTCGGAGCCAAGTGCACCAACTGCATCGATGATGAACCCTCCAAAGCTAAAGTCATGATCATCTCCGGAATTTTCTTCATCCTGGCCGGGATCCTAGTTCTCATCCCTGTCTCCTGGTCGGCCAGCACCATCATCCAAGACTTCTACAACCCCCTGCTGATCAACGCACAGAAGAGGGAGCTGGGGGCCTCTCTCTACATTGGCTGGGGGGCTGCAGCCCTGCTACTGATCGGAGGGGCTATGCTGTGCAGCTCCTGCTCCCccagggaggagaagaggtacAAGCCCCCCGGCATGGCCTACTCCGCCCCTCACAGCGGGGGCGCAGCGGGATACGTCAGGAAGGACTACGTCTGAGAGAGATTTCTTCACCTGCCTGATTGAATGGAGGGCAGAAAAAATGAAGGAAAAGAAGAGGAGAGGTATCGCTATCCTGAACATTAGCGTGTTTGTTTGCTGTCTGACACAAAAACTAGGAGAGGAATCTCCTAGAAAGACTCCAACATGAAGAAATGTGTGCTTTAATGTTACTTCTTGGCTTTTCCTCCCCTGCGTATTTCTATTTAGTTTCGTTGTTCAGCTTTATAGTGTGCAGGCTTTGGTGACGTATGGTAGAGGCTGTCAAGAcctagatactgtacatataatcCCAAATGGCTAGGTTGACAACTGTTAATTATTTCACAACAGTTTCAATTATAGTTTTTATTCATTCATTTCAAACTTGAGATGACAAACCAACGCCCAGTTGTTTCAGCACCGTACTGTAAATTTAAACTTGAAGGGTCTTGGTTTTCAAGTACTTGAGAAAAAAATCTATAGTTTTGCACAGTATGTGGGCTCATATTTGTAGTGCAGTACTGAGGGCCTTATTGTATCCGTAGTATGCTATTGGCAAGGTAGGATTTTGTTACACTGAAACTTTTAGCTAAAATGTTGCACTGTGTATCACTGACACAGAGGAGGAACTAGGAACTGTTTTTACATGGATTTGACATGGATTTGATCAAGAgattcagtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

NR:

description
claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618925.2 True 1869 mRNA 0.48 1 50035811 50037679

Neighbor

gene id symbol gene type direction distance location
LOC110534197 LOC106602918 coding downstream 240225 49772382 ~ 49795586 (-)
LOC110534195 NA coding downstream 301155 49733006 ~ 49734656 (-)
LOC110534929 NA coding downstream 373975 49649578 ~ 49661881 (-)
LOC110534927 LOC106603007 coding downstream 490836 49543289 ~ 49544975 (-)
LOC110533138 NA coding downstream 595949 49438004 ~ 49443736 (-)
LOC110533140 LOC106563775 coding upstream 7377 50045056 ~ 50048932 (-)
LOC110534213 LOC106602908 coding upstream 209175 50246298 ~ 50260435 (-)
grk1b NA coding upstream 281391 50319070 ~ 50326034 (-)
slc25a35 slc25a35 coding upstream 303437 50341116 ~ 50353286 (-)
LOC118936704 NA coding upstream 308843 50346522 ~ 50349995 (-)
G898945 NA non-coding downstream 25825 50008145 ~ 50009986 (-)
G898863 NA non-coding downstream 46081 49988640 ~ 49989730 (-)
G898842 NA non-coding downstream 69973 49965639 ~ 49965838 (-)
G898798 NA non-coding downstream 138208 49897376 ~ 49897603 (-)
G898746 NA non-coding downstream 221068 49814535 ~ 49814743 (-)
G899078 NA non-coding upstream 113240 50150919 ~ 50151140 (-)
G899079 NA non-coding upstream 114006 50151685 ~ 50151966 (-)
G899411 NA non-coding upstream 121238 50158917 ~ 50159120 (-)
G899413 NA non-coding upstream 124508 50162187 ~ 50162507 (-)
G899417 NA non-coding upstream 128792 50166471 ~ 50166714 (-)
LOC110534172 LOC106602940 other downstream 1151736 48881449 ~ 48907973 (-)
G896841 NA other downstream 2046735 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 2802765 47203241 ~ 47234608 (-)
G894917 NA other downstream 4117472 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 4285480 45747090 ~ 45751405 (-)
G899409 NA other upstream 118513 50156192 ~ 50156902 (-)
G899421 NA other upstream 144717 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 427788 50463950 ~ 50482534 (-)
G899727 NA other upstream 683307 50720986 ~ 50721603 (-)
G899739 LOC106602890 other upstream 705479 50743158 ~ 50750233 (-)

Expression


Co-expression Network