LOC110533140 (LOC106563775)


Basic Information

Item Value
gene id LOC110533140
gene name LOC106563775
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50045056 ~ 50048932 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933319.1
AAACATGGCCGATGTCCAGGCAACACCTAATCGTTTGGCCCTGATGTGTGATGTCATGGCTTAGGTGGGTCTGACCAAGCTGCAATAAAATATATCAAGATAAGAGTGGACAACTCCTCACCCGAAAgcaaagagacagagatacacacacacacagagagaacacactttGAGAAGCTTTCCTTTCTGGATACTAAGACAAGGGAGAGGTGAGCTGCTaaagacagaaggagacaagAAGGAAAAAAGGACTGCATACAGGGGAGAAAGACAGTGTGAGGGGTTAAAAGGTGAGAAATAGTAACAACcaagaagagtgagagagaaagaagaaggaaATAAGGCCAAAGTGAGAGTCTGAGATAGGGAAagagaagaaaataaataaagagaCTGAGAAAGGAGcgtgagagaaagaggagtgcCATCTTAATCCTAAGTGAGACTTAATTGTAGTGCGGTGCGATGGCGTCGTTCGCTCTGGAGCTAGTGGGTGTGAGCCTGTCCGTGCTGGGCTGGATACTGAGCGTAGTGAGCTGTGCTCTGCCCATGTGGAGGGTCTCAGCCTTCATCGGAGCCAACATCGTCACAGCCCAGGTCTACTGGGAAGGTTTATGGATGAGCTGTGTGGTTCAGAGCACAGGCCAGATGCAGTGTAAGGTTTACGACTCCATGCTGGCCTTGCCCCAGGACCTGCAGGCTGCCAGAGCTCTGTCTATGGCCACCATCATCCTGGGGGTCTTAGCTCTCCTCGTGGCGACCATCGGAGCCAAGTGTACCAACTGCATCGAGGAGGAGGGAGTGAAGGCCAAGGTGGTGTTGTCCGCCGGAGCTGCCTTTATCCTAGCTTCGCTGGTCCAGCTGGTGCCTGTGTCCTGGTCAGCCCACATCATCATCCTGGAGTTCTACAACCCTATCATCCCATCGGCACAGAAGATGGAGATCGGGGCAGCGCTGTACCTGGGCTGGGCCGCGGCCGCATTGCTGCTGCTGGGGGGGGCTATCCTCTGCTGCAGCTGCCCTCCTCAGGAAGACAAACCAATGACAAGGTACTCAATCCCTCCCCAAAGCCGGATGGCGTATTCCGCTGCTCCAAGGTCCATGGCCCCCAGCTCCTACAACAGGAAAGACTATGTGTGagaaaaggaggggaggggggggggggggggggggtgttcaacATGTCGGTTTATTTGTGGGTTTCTTGAGAATATAACGGAGTGTTTCAACAGTTTGTTTAAATATACCAGGACCATGGGCAAATTATTTTACTCATCCTTGCCTTCATGGAAAGGGGGATGTATCGACCACAGGGCGGCTTAAGGTGACAAGAGCTCATTAATCAAGTTGACTCTTTTTCCTCTGAGACTGAAAAAAAGTCCACCAAAACAAGATGTATGTTGTTTTATACTTCTGTCTGGTTTACTATCAGTTGTCAGGCACTCAACATAACTGAGTGCTTTTTATTGGCAATGAGTCACATTCCCAGAGGAAGTAACTACAATAACTCCAGTTAATAATTTCTTATACAGTTTGTTATGACCACAATTATTAcaagatacagtatattatactGCATCTTGACTACGcatgtcattatataatagataTTCTGATAAAAAAAAACGTCATGGCAAGTTGACCTACAGCTGAACTTAATGTTTATATCATATTTATCTGaacttttttgtttttgtttgctaTTCTTCGTTGTAGTGGTTTGAATCACTCATTTCCAAATGTTACATGGAATATGTGAAACCTTTGGGTTTTGTACTGTTGTGAGAAGAAGAGGTAGGACATTGCAAAgcttgtattgtattgtaaataACTGTTGTGTATACAGTTTGCAGAAAACTATTTCCTTCAGTGGATAAATAGGTTATGTGTCCAATCAATCCAACAGACGTTCCAACAAAGCAAGATACTTGCAGTAGGACTAGGAAAAtagataaatatattttatgatACATAAATACCAAAATATACTGTGCAGGGTTACTGGGGCTCAACCAAACAGTCTGGTCAACAGCCATAAACTATGAAGAACAACGAGCATTGACAGTAGAGACATTGTTGGGATGGAAGCAAATCTTCTCCCCATAGAGTAACCCTGTTTTTAAAAAACGGCTCATAAAGAAGTTTGGAATATGAATCTGTTTTTGTTGTAGACAGCCAATCTGGGCTCTGTTTTATATTGTAAATTATTTTGAAATAGATAACCTTTCGATGGTACGTGTAAGTGTTACTACTGTAGTGTAAATGGTCGACCTCTGCCTGACAATATTGTGTTTTCAGTTTGATTAATAAATATCAGTGTACAGTTACagccaaatatattggcacccttgcatgTTTCTTAAAAAATTACCTACAAACTTTTGGTCTCCACACCTTACTGGATTTTCAACATTGCAGAACTAATTATATTTTGGTAAACTTAAGGTTACAATTTTGAAgtagaaaataaagacaaatggCATTGATAAAATTGTCACCCCGGAACTATTACTTGGTTTGCAAATCCTTTGGCGAAGATAACTGCCAACAAATGCTTTCTTTTAACCATCAATACTGTAATGGGTGTCGTCGTCTGATGAGGAAGAATCAGACTTTTTTTTTGGacttttatttaaactgaacactaaaacaaagtgcaaaccgaaacagtcctgtcaggtgcagaaaacaccaaacagaaaataactacccacaaacataggtgggaaaaagctacctaagtatggttcccaatcagagacaacgatagtcagctgtccctgattgagaaccatacctggccaaaacaaagaaatactaAAAATAGAAAAAGGAAAattgaatgcccaccccaaatcacaccctgaccaaaccaaaatagagacataaaaagctctctaaggtcagggtgtgacaaatacGCTTGCTGCACCTTTCTACTGGCAATTTGTCCCACTCTTCAGCAAACTGTAGCAGTaaactgctctaattcttcaTTGTTTGAGGGGTGCCCTCCACCAAATGCTGTTTTGCACTCTCACCATAGGTAACGATgtgattcagatctggactctTCACTGGCCATTCCAAAACAGTCCAGCGTTTCTTCTTCATCCATTTCAGGGTGCTTTTTATGTGAGTTTGGGATTGTTGTCCTACTCGAAGACTCACAACCTTCAAAAGAGACAGTTTTTGGACACTGGGTCGAACATTGCACTCCAAAACACCTTGATAATTTGCTAATTTCATGACGTCTTGCGCACATTCAAGGCCCCGACGTCTTGCGCACATTCAAGGCCCCAAGCCCCAATTACcagaggcagcaaagcaaccTCACAGCATTATTGAACCTCCCCACATACGTTATTGTGTAGAGGGTGATCATTTCTTTGAACACTTCTTTTGGTCGTTGGTAAAAATAGGAACACCCCACCGCTGAAGGAGACACAAGAAAGCCTGATTGAACTCAAAAATCCACCTAAACAAGTTAAATACTTGGGTAAATGTTATGTGGACCAATGAAACCAAATTAGAGCTCTTTGGCAATACAGATCAACACTGTGTTTACTGATGACCAAATGAAGCATTCAAAGAAAAGAACACCCTCCCTGTAGTCAAAGATGGTAGAGGTTTGATAGTGCTGTGGGGTTGCTTTTCTGCCTCTGGTACTGGGGGCCTTGAATGTGCGCAAGGCATCATGAGATCAACAGATTATCATGTGTTTTGTAGTCAAATGCTCAACCCAGTGTCCACAAACTGGGTCTCCATTGAAGGTTgtgggtcttccagcaggacaatgacctcaaacacACATGAAAAAGCAtccatgtcacgccctggtcttagtattttgtgttttctttattattttggtcag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933319.1 True 3877 mRNA 0.43 1 50045056 50048932

Neighbor

gene id symbol gene type direction distance location
LOC110534205 LOC106603005 coding downstream 7377 50035811 ~ 50037679 (-)
LOC110534197 LOC106602918 coding downstream 249470 49772382 ~ 49795586 (-)
LOC110534195 NA coding downstream 310400 49733006 ~ 49734656 (-)
LOC110534929 NA coding downstream 383220 49649578 ~ 49661881 (-)
LOC110534927 LOC106603007 coding downstream 500081 49543289 ~ 49544975 (-)
LOC110534213 LOC106602908 coding upstream 197922 50246298 ~ 50260435 (-)
grk1b NA coding upstream 270138 50319070 ~ 50326034 (-)
slc25a35 slc25a35 coding upstream 292184 50341116 ~ 50353286 (-)
LOC118936704 NA coding upstream 297590 50346522 ~ 50349995 (-)
tp53 tp53 coding upstream 339016 50387948 ~ 50399688 (-)
G898945 NA non-coding downstream 35070 50008145 ~ 50009986 (-)
G898863 NA non-coding downstream 55326 49988640 ~ 49989730 (-)
G898842 NA non-coding downstream 79218 49965639 ~ 49965838 (-)
G898798 NA non-coding downstream 147453 49897376 ~ 49897603 (-)
G898746 NA non-coding downstream 230313 49814535 ~ 49814743 (-)
G899078 NA non-coding upstream 101987 50150919 ~ 50151140 (-)
G899079 NA non-coding upstream 102753 50151685 ~ 50151966 (-)
G899411 NA non-coding upstream 109985 50158917 ~ 50159120 (-)
G899413 NA non-coding upstream 113255 50162187 ~ 50162507 (-)
G899417 NA non-coding upstream 117539 50166471 ~ 50166714 (-)
LOC110534172 LOC106602940 other downstream 1160981 48881449 ~ 48907973 (-)
G896841 NA other downstream 2055980 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 2812010 47203241 ~ 47234608 (-)
G894917 NA other downstream 4126717 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 4294725 45747090 ~ 45751405 (-)
G899409 NA other upstream 107260 50156192 ~ 50156902 (-)
G899421 NA other upstream 133464 50182396 ~ 50182788 (-)
LOC110534220 LOC106602898 other upstream 416535 50463950 ~ 50482534 (-)
G899727 NA other upstream 672054 50720986 ~ 50721603 (-)
G899739 LOC106602890 other upstream 694226 50743158 ~ 50750233 (-)

Expression


Co-expression Network