LOC110534218 (LOC106602900)


Basic Information

Item Value
gene id LOC110534218
gene name LOC106602900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 50452453 ~ 50454285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618939.2
TCAATCCCATGTTTAACCTAGGTTTAGTAACGTCATTGTTCTATTCCTCCTCGTCATAACGTTCAACGTCACGAAATTAGCATTAGCAACAAGGCGAACAGATTTGATAGAATTGCATAGTTTTGCTGCCATACAAAGGGCAGGCATAGGCTAGCTTGAACTGTCATCCAAATTTAGAGTTTGGAGGAATCTTAAACCGTGACAATGAAATTCCTGTATAAAGAGGAGCACCCATTTGAGAAGAGAAGATCGGAGGGGGAAAAGATCAGGAAGAAGTACCCTGATAGAGTGCCAGTGATAGTGGAGAAAGCCCCCAAAGCCAGAATTGGTGATTTGGACAAGAAGAAATATCTTGTACCCTCTGATCTTACAGTGGGACAGTTCTACTTCCTAATACGGAAGAGGATTCACCTGCGGGCAGAGGACGCCCTTTTCTTCTTTGTCAACAATGTCATTCCTCCCACCTCAGCCACCATGGGACTACTTTACCAGGAACACCACGAAGAGGACTTCTTTCTTTACATTGCCTACAGTGACGAGAGTGTCTACGGAAACAGCCAAACGAAAGTCTAGCTAACCACCTTTCAGCACATCTGCAGTCTGACTCTGCATCGTCACAAAGATAAATAAAAGCAATTTAGTTGCCACCAGATTAATCTTTTAATGCACTTTCAAACCCCCTTTCCCCTTTTAAAGCTAAAATCCTTAATTGAAACGATAAAACGACCatcccgcctctgttttggtaaaaagcgaCGGGATGGACCTgtggaaatgtaaccactctcaaattcatagaccgagctattgatgcaaggactgaccatgcaTGATGTCAAAATTATAGTTAACAatattttgaggctatacagtagtTTTTTTAAACGTTGTTTACCAACATTGGAGTAAAACTAGCTTCTATTTTGGGttcaacagttgaactaagctcatgaggcatttataagttatatttttcaagaatcaatgggtatatataatTTATTATT
>XM_021618940.2
TGATATATTGTTTGTTTTGCGTTTGAAGTGCTTCTAGATTATGAAAAGCGCTATataaatgtaatacattatttttccgagttcccagtttttTGGAACGCGGCATCAATCCCATGTTTAACCTAGGTTTAGTAACGTCATTGTTCTATTCCTCCTCGTCATAACGTTCAACGTCACGAAATTAGCATTAGCAACAAGGCGAACAGATTTGATAGAATTGCATAGTTTTGCTGCCATACAAAGGGCAGGCATAGGCTAGCTTGAACTGTCATCCAAATTTAGAGTTTGGAGGAATCTTAAACCGTGACAATGAAATTCCTGTATAAAGAGGAGCACCCATTTGAGAAGAGAAGATCGGAGGGGGAAAAGATCAGGAAGAAGTACCCTGATAGAGTGCCAGTGAGttgctgctaactagctagccaatgCTTGCGAAATGCTAACCGCATCGCTTGTCACccacacacaacacaataacAAAGAGAGGAACTTCAGGACATCGACAGTGTTGGTGATAGTGGAGAAAGCCCCCAAAGCCAGAATTGGTGATTTGGACAAGAAGAAATATCTTGTACCCTCTGATCTTACAGTGGGACAGTTCTACTTCCTAATACGGAAGAGGATTCACCTGCGGGCAGAGGACGCCCTTTTCTTCTTTGTCAACAATGTCATTCCTCCCACCTCAGCCACCATGGGACTACTTTACCAGGAACACCACGAAGAGGACTTCTTTCTTTACATTGCCTACAGTGACGAGAGTGTCTACGGAAACAGCCAAACGAAAGTCTAGCTAACCACCTTTCAGCACATCTGCAGTCTGACTCTGCATCGTCACAAAGATAAATAAAAGCAATTTAGTTGCCACCAGATTAATCTTTTAATGCACTTTCAAACCCCCTTTCCCCTTTTAAAGCTAAAATCCTTAATTGAAACGATAAAACGACCatcccgcctctgttttggtaaaaagcgaCGGGATGGACCTgtggaaatgtaaccactctcaaattcatagaccgagctattgatgcaaggactgaccatgcaTGATGTCAAAATTATAGTTAACAatattttgaggctatacagtagtTTTTTTAAACGTTGTTTACCAACATTGGAGTAAAACTAGCTTCTATTTTGGGttcaacagttgaactaagctcatgaggcatttataagttatatttttcaagaatcaatgggtatatataatTTATTATT

Function

NR:

description
gamma-aminobutyric acid receptor-associated protein isoform X2

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0007420 brain development biological_process

KEGG:

id description
K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618939.2 False 1007 mRNA 0.40 4 50452453 50454180
XM_021618940.2 True 1224 mRNA 0.40 4 50452453 50454285

Neighbor

gene id symbol gene type direction distance location
LOC110534217 LOC106602903 coding downstream 10374 50400786 ~ 50442079 (-)
tp53 tp53 coding downstream 52765 50387948 ~ 50399688 (-)
slc25a35 slc25a35 coding downstream 99167 50341116 ~ 50353286 (-)
LOC118936704 NA coding downstream 102458 50346522 ~ 50349995 (-)
grk1b NA coding downstream 126419 50319070 ~ 50326034 (-)
LOC110534220 LOC106602898 coding upstream 9665 50463950 ~ 50482534 (-)
slc25a15b slc25a15 coding upstream 171845 50626130 ~ 50637048 (-)
LOC110534228 NA coding upstream 267405 50721690 ~ 50767820 (-)
si:ch211-215c18.3 NA coding upstream 498883 50953168 ~ 50962186 (-)
LOC110534238 bco2b coding upstream 1002811 51457096 ~ 51559902 (-)
G899533 NA non-coding downstream 87636 50364563 ~ 50364817 (-)
G899527 NA non-coding downstream 95652 50356340 ~ 50356801 (-)
G899524 NA non-coding downstream 101145 50331401 ~ 50351308 (-)
G899518 NA non-coding downstream 129366 50322836 ~ 50323087 (-)
LOC110534213 LOC106602908 non-coding downstream 192081 50246298 ~ 50260435 (-)
G899616 NA non-coding upstream 51355 50505640 ~ 50505849 (-)
G899620 NA non-coding upstream 54813 50509098 ~ 50509346 (-)
G899626 NA non-coding upstream 67282 50521567 ~ 50611065 (-)
G899636 NA non-coding upstream 99429 50553714 ~ 50618858 (-)
G899421 NA other downstream 269665 50182396 ~ 50182788 (-)
G899409 NA other downstream 295551 50156192 ~ 50156902 (-)
LOC110534172 LOC106602940 other downstream 1568378 48881449 ~ 48907973 (-)
G896841 NA other downstream 2463377 47987761 ~ 47989076 (-)
LOC110534118 LOC106603020 other downstream 3219407 47203241 ~ 47234608 (-)
G899727 NA other upstream 266701 50720986 ~ 50721603 (-)
G899739 LOC106602890 other upstream 288873 50743158 ~ 50750233 (-)
G900070 NA other upstream 516478 50970763 ~ 50981750 (-)
G900807 NA other upstream 1001215 51455500 ~ 51455942 (-)

Expression


Co-expression Network