Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110534220 |
| gene name | LOC106602898 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 50463950 ~ 50482534 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| CTD nuclear envelope phosphatase 1A-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021618941.2 | False | 2849 | mRNA | 0.40 | 8 | 50463950 | 50482531 |
| XM_021618942.2 | False | 2668 | mRNA | 0.41 | 9 | 50463950 | 50482534 |
| XM_036933325.1 | False | 2583 | mRNA | 0.40 | 8 | 50463950 | 50482534 |
| TU1023349 | False | 577 | TUCP | 0.46 | 4 | 50465467 | 50471878 |
| TU1023350 | True | 279 | lncRNA | 0.50 | 2 | 50465467 | 50465873 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534218 | LOC106602900 | coding | downstream | 9665 | 50452453 ~ 50454285 (-) |
| LOC110534217 | LOC106602903 | coding | downstream | 21871 | 50400786 ~ 50442079 (-) |
| tp53 | tp53 | coding | downstream | 64262 | 50387948 ~ 50399688 (-) |
| slc25a35 | slc25a35 | coding | downstream | 110664 | 50341116 ~ 50353286 (-) |
| LOC118936704 | NA | coding | downstream | 113955 | 50346522 ~ 50349995 (-) |
| slc25a15b | slc25a15 | coding | upstream | 143596 | 50626130 ~ 50637048 (-) |
| LOC110534228 | NA | coding | upstream | 239156 | 50721690 ~ 50767820 (-) |
| si:ch211-215c18.3 | NA | coding | upstream | 470634 | 50953168 ~ 50962186 (-) |
| LOC110534238 | bco2b | coding | upstream | 974562 | 51457096 ~ 51559902 (-) |
| LOC110534240 | bco2b | coding | upstream | 1116093 | 51598627 ~ 51656987 (-) |
| G899533 | NA | non-coding | downstream | 99133 | 50364563 ~ 50364817 (-) |
| G899527 | NA | non-coding | downstream | 107149 | 50356340 ~ 50356801 (-) |
| G899524 | NA | non-coding | downstream | 112642 | 50331401 ~ 50351308 (-) |
| G899518 | NA | non-coding | downstream | 140863 | 50322836 ~ 50323087 (-) |
| LOC110534213 | LOC106602908 | non-coding | downstream | 203578 | 50246298 ~ 50260435 (-) |
| G899616 | NA | non-coding | upstream | 23106 | 50505640 ~ 50505849 (-) |
| G899620 | NA | non-coding | upstream | 26564 | 50509098 ~ 50509346 (-) |
| G899626 | NA | non-coding | upstream | 39033 | 50521567 ~ 50611065 (-) |
| G899636 | NA | non-coding | upstream | 71180 | 50553714 ~ 50618858 (-) |
| G899421 | NA | other | downstream | 281162 | 50182396 ~ 50182788 (-) |
| G899409 | NA | other | downstream | 307048 | 50156192 ~ 50156902 (-) |
| LOC110534172 | LOC106602940 | other | downstream | 1579875 | 48881449 ~ 48907973 (-) |
| G896841 | NA | other | downstream | 2474874 | 47987761 ~ 47989076 (-) |
| LOC110534118 | LOC106603020 | other | downstream | 3230904 | 47203241 ~ 47234608 (-) |
| G899727 | NA | other | upstream | 238452 | 50720986 ~ 50721603 (-) |
| G899739 | LOC106602890 | other | upstream | 260624 | 50743158 ~ 50750233 (-) |
| G900070 | NA | other | upstream | 488229 | 50970763 ~ 50981750 (-) |
| G900807 | NA | other | upstream | 972966 | 51455500 ~ 51455942 (-) |
| G902519 | NA | other | upstream | 2419660 | 52902194 ~ 52937648 (-) |
