LOC110534238 (bco2b)


Basic Information

Item Value
gene id LOC110534238
gene name bco2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 51457096 ~ 51559902 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618973.2
ccctgtcccttTGTTCCTCAGCAATGGGTTATATACCAGGATTATATAATGCACCGCCTCCATATTGACTGCCAGTAGAGTGTGTAGCTCACTAGCGAGCAGTGTAGTGCCCAACTAGCAAAAAAAGCTTTCTCTATAAAAGGACAGTAGACTTCTGTAGCTAACTGAATTCCACACACAGCATTCTTcacacagcagcagcagtgttctAAGTCAAGCCATGCCACCAGTAAAGCTTGAGGTATCAGATGCGACCATCACACCGTCTAGTGATGCCAAGCCAAAGGAGCTCAATAAGTGTAACCAGCTAGAGCTGAAGGGTCTGGAGTCTATCGCCCCTCTGGTGCGGTCCGTGGAGGAGACCCCAGAGCCCATCGCCACAGAGGTGTGTGGGACCATCCCAACCTGGATCCGAGGCAGCCTCCTCCGCAATGGCCCAGGGAAGTTTGAGTTCGGAAACCAACACTACAACCACTGGTTTGATGGGATGGCCATGCTGCACCAGTTTAAGATTGAGGATGGCAAGGTGACCTATAGGAGTCGCTTCCTGCAGAGTGATGCTTACAAGAAGAACAGCGAGAGGAACCGCATCATGGTGTCAGAGTTTGGCACAGTGGCCATGCCCGACCCCTGCAAGAACTTCTTCCTGCGTTTCCTCTCTCGCTTCGAGATGATAGAGGCAACGGACAACGCCAGTGTTAGTTTTGTAAAGTACAAGGGAGACTGTTTTGTCAGCACTGAGACCAACTACATGTACAGGGTGGACCCAGAGAGCCTGGAGACACAGAATAAGGTGGATTGGACAAAGTTTATTGCTGTGAATATGGCCACTGCGCATCCCCACACTGAACCAGACGGCACTACGTACAACATGGGCAACTCATATGGCAGAAAAGGTGCCTTGTATAACATAATCAAAGTGCCCCCTATGAAGAACAACCCTGAGGAAACCCTGGAGGGGGCTAAAGTGCTGTGCTCTATTGTCCCTGCAGACAAGGCCAGGCCCTCCTACTACCACAGCTTCGCAATGTCGGAGAACTATGTCGTGTTCATAGAGCAGCCTATCAAGATGGACCTAATGAAGATTGTCACAGCTAAACTGAGGGGAAAGGGAATCAGTGAGGGGGTCTACTGGGACCCCAAACAAGATACTGTCTTTCACCTGGTAGACAAACACACGGGACAGACCAGCTCAGTAAAGTTCCACACCAAGGCTCTGTCAGTGTTCCACCAGATCAATGCTTATGAGGAGGACGGCTTCCTGATGCTGGACATGTGTTGCTCTGATAATGGAGAGGCAATCAACAACTACCTCATCCAGAACCTACGCAAGTCAGGGGAGGCTCTCGATCAGGTCTACAACACCATGTACAGAGCGTTCCCCCGGCGCTTTGTTCTGCCCCTCAATGTGACCAACGACACACCGACAGGTGTGAACCTCAACACACGTCCCGCCAGCTCTGCCACTTCTTTCAAAACAGCTAAAGATAAGGTGGTGTGCCAGTTTGAGGATCTCCATGGAGAGGACCTTTATGAGTACGGAGGCCTGGAGTTCCCCCAGATCAACTACAGCAAGTTCAACACGCGGCCCTATCGCTACTTCTACGGCTGTGGCTTTAGGCACCTGGTGGGAGACTCACTCCTCAAGATTGACCTGGAGGGAAAGAAAGTCAAGgTGTGGTACCAGAAGGGTTTGTTTCCCTCAGAGCCTGTTTTCGTTCCCTCGCCGGACGCCGTGGAGGAGGACGATGGGGTCATCCTGTCCGTGGTGGTCACGCCCACTGAGGATAAGAGTACATTCCTCCTGGTTCTGAATGCAAAGACATGGGAGGAGCTGGGGAGAGCCGAGGTGCCTGTCAATATTCCCTACGGTTTCCATGGTACCTTCAACCCCACTGCCTAGATCAGCATTACTGACCTAACAATCACCCaagccttcctccctccctccctcagattattttgtgaccaatagaaattaatggtaaataatgtagtgtTTCATgatggagtcacttttattgtaaatcagaatataatatgtttctaatcACTTCTACGTTACATGTtaaaatgtggatgctaccatgattacagataatcctgaataaattgtgaataatgatgagtgagaaagttagatgcaGAAAtagcataccccccccccccccccccccaaaaaaaaatataaCCTCCTCTGTTTTTGTAATGGTGAGAGTCTTTTGTGTGTCTTTTgtgtgtctgtaactttctcacttgTCATTATTTACGAATCATTCAGGATTTTCCATTTTCACGGTAGCATCCACAATAATGTACAATGGAAGTGTTTAGCAGCATTCTATTGTTATTtccaataaaagtgactccaaaatgaccatacattatttaccattcaagtcaaggggtctgaatacgctgtatacacacattttaaatatacattttacacACATGGTACTTTTTTATAGAGCAATcacatattaataataataataatacattaccaaacaCAAGCTCTTTAATCACACATGAATTTTGAACCTTTATCATCGCATATTATCCACAGATTGTAagctaaagatgaaaacctttcctatGTTAATacttatattattgattgattgacaatgGCCTTCCTAATTGCCCAACACTGCTCTTTGTAAGGTTAATGTTAAGTCAATGTTGCTACTGTACATAGGGGCAATACCATAATAAATGATCTCTTCGCAGAAAAATCTACAGTgctgagattgttgtatgcccTAAATATATAGCATGAAATTGgtggcaagaattttgtataataattttaaTTGAAAAAGTCAGTCTTGAATCAAATTTAGTTTTTTGTATCAGTTCATATAACATGTttcatggaatcggtacatcgaaaatctcttcccatttattttgcaacctcTATGGCGCAGGGTCAACATTTTTGCCCTCAAATGAAGctggtatatttttctatttatgccaATCATTTTCTGCCAATTTTGTATCTTTAGTATATGGCAGACAAACAAGTTCCAAACATTCCCCCTCTTCCCTTTGCCCTTGGTAATGCTGCAATCAATTGGTTGTAACTTTGCATTGAGCAGACATTCCCATATATTTTTGATAGTGGAGT
>XM_021618974.2
CTATAACTGTCCCTGTATTCTCATCCCTGAATGATGCTGGCtctctttccactctctctcccctccctgtcccttTGTTCCTCAGCAATGGGTTATATACCAGGATTATATAATGCACCGCCTCCATATTGACTGCCAGTAGAGTGTGTAGCTCACTAGCGAGCAGTGTAGTGCCCAACTAGCAAAAAAAGCTTTCTCTATAAAAGGACAGTAGACTTCTGTAGCTAACTGAATTCCACACACAGCATTCTTcacacagcagcagcagtgttctAAGTCAAGCCATGCCACCAGTAAAGCTTGAGGTATCAGATGCGACCATCACACCGTCTAGTGATGCCAAGCCAAAGGAGCTCAATAAGTGTAACCAGCTAGAGCTGAAGGGTCTGGAGTCTATCGCCCCTCTGGTGCGGTCCGTGGAGGAGACCCCAGAGCCCATCGCCACAGAGGTGTGTGGGACCATCCCAACCTGGATCCGAGGCAGCCTCCTCCGCAATGGCCCAGGGAAGTTTGAGTTCGGAAACCAACACTACAACCACTGGTTTGATGGGATGGCCATGCTGCACCAGTTTAAGATTGAGGATGGCAAGGTGACCTATAGGAGTCGCTTCCTGCAGAGTGATGCTTACAAGAAGAACAGCGAGAGGAACCGCATCATGGTGTCAGAGTTTGGCACAGTGGCCATGCCCGACCCCTGCAAGAACTTCTTCCTGCGTTTCCTCTCTCGCTTCGAGATGATAGAGGCAACGGACAACGCCAGTGTTAGTTTTGTAAAGTACAAGGGAGACTGTTTTGTCAGCACTGAGACCAACTACATGTACAGGGTGGACCCAGAGAGCCTGGAGACACAGAATAAGGTGGATTGGACAAAGTTTATTGCTGTGAATATGGCCACTGCGCATCCCCACACTGAACCAGACGGCACTACGTACAACATGGGCAACTCATATGGCAGAAAAGCAATGTCGGAGAACTATGTCGTGTTCATAGAGCAGCCTATCAAGATGGACCTAATGAAGATTGTCACAGCTAAACTGAGGGGAAAGGGAATCAGTGAGGGGGTCTACTGGGACCCCAAACAAGATACTGTCTTTCACCTGGTAGACAAACACACGGGACAGACCAGCTCAGTAAAGTTCCACACCAAGGCTCTGTCAGTGTTCCACCAGATCAATGCTTATGAGGAGGACGGCTTCCTGATGCTGGACATGTGTTGCTCTGATAATGGAGAGGCAATCAACAACTACCTCATCCAGAACCTACGCAAGTCAGGGGAGGCTCTCGATCAGGTCTACAACACCATGTACAGAGCGTTCCCCCGGCGCTTTGTTCTGCCCCTCAATGTGACCAACGACACACCGACAGGTGTGAACCTCAACACACGTCCCGCCAGCTCTGCCACTTCTTTCAAAACAGCTAAAGATAAGGTGGTGTGCCAGTTTGAGGATCTCCATGGAGAGGACCTTTATGAGTACGGAGGCCTGGAGTTCCCCCAGATCAACTACAGCAAGTTCAACACGCGGCCCTATCGCTACTTCTACGGCTGTGGCTTTAGGCACCTGGTGGGAGACTCACTCCTCAAGATTGACCTGGAGGGAAAGAAAGTCAAGgTGTGGTACCAGAAGGGTTTGTTTCCCTCAGAGCCTGTTTTCGTTCCCTCGCCGGACGCCGTGGAGGAGGACGATGGGGTCATCCTGTCCGTGGTGGTCACGCCCACTGAGGATAAGAGTACATTCCTCCTGGTTCTGAATGCAAAGACATGGGAGGAGCTGGGGAGAGCCGAGGTGCCTGTCAATATTCCCTACGGTTTCCATGGTACCTTCAACCCCACTGCCTAGATCAGCATTACTGACCTAACAATCACCCaagccttcctccctccctccctcagattattttgtgaccaatagaaattaatggtaaataatgtagtgtTTCATgatggagtcacttttattgtaaatcagaatataatatgtttctaatcACTTCTACGTTACATGTtaaaatgtggatgctaccatgattacagataatcctgaataaattgtgaataatgatgagtgagaaagttagatgcaGAAAtagcataccccccccccccccccccccaaaaaaaaatataaCCTCCTCTGTTTTTGTAATGGTGAGAGTCTTTTGTGTGTCTTTTgtgtgtctgtaactttctcacttgTCATTATTTACGAATCATTCAGGATTTTCCATTTTCACGGTAGCATCCACAATAATGTACAATGGAAGTGTTTAGCAGCATTCTATTGTTATTtccaataaaagtgactccaaaatgaccatacattatttaccattcaagtcaaggggtctgaatacgctgtatacacacattttaaatatacattttacacACATGGTACTTTTTTATAGAGCAATcacatattaataataataataatacattaccaaacaCAAGCTCTTTAATCACACATGAATTTTGAACCTTTATCATCGCATATTATCCACAGATTGTAagctaaagatgaaaacctttcctatGTTAATacttatattattgattgattgacaatgGCCTTCCTAATTGCCCAACACTGCTCTTTGTAAGGTTAATGTTAAGTCAATGTTGCTACTGTACATAGGGGCAATACCATAATAAATGATCTCTTCGCAGAAAAATCTACAGTgctgagattgttgtatgcccTAAATATATAGCATGAAATTGgtggcaagaattttgtataataattttaaTTGAAAAAGTCAGTCTTGAATCAAATTTAGTTTTTTGTATCAGTTCATATAACATGTttcatggaatcggtacatcgaaaatctcttcccatttattttgcaacctcTATGGCGCAGGGTCAACATTTTTGCCCTCAAATGAAGctggtatatttttctatttatgccaATCATTTTCTGCCAATTTTGTATCTTTAGTATATGGCAGACAAACAAGTTCCAAACATTCCCCCTCTTCCCTTTGCCCTTGGTAATGCTGCAATCAATTGGTTGTAACTTTGCATTGAGCAGACATTCCCATATATTTTTGATAGTGGAGT

Function

symbol description
bco2b Predicted to enable beta-carotene 15,15'-monooxygenase activity and carotenoid dioxygenase activity. Predicted to be involved in carotene catabolic process and retinal metabolic process. Predicted to be active in mitochondrion. Is expressed in xanthophore. Orthologous to human BCO2 (beta-carotene oxygenase 2).

NR:

description
beta,beta-carotene 9',10'-oxygenase-like isoform X2

GO: NA

KEGG:

id description
K11159 K11159; carotenoid cleavage oxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618973.2 False 3136 mRNA 0.45 12 51457096 51559838
XM_021618974.2 True 3071 mRNA 0.44 11 51457096 51559902

Neighbor

gene id symbol gene type direction distance location
si:ch211-215c18.3 NA coding downstream 494910 50953168 ~ 50962186 (-)
LOC110534228 NA coding downstream 689276 50721690 ~ 50767820 (-)
slc25a15b slc25a15 coding downstream 820048 50626130 ~ 50637048 (-)
LOC110534220 LOC106602898 coding downstream 974562 50463950 ~ 50482534 (-)
LOC110534218 LOC106602900 coding downstream 1002811 50452453 ~ 50454285 (-)
LOC110534240 bco2b coding upstream 38725 51598627 ~ 51656987 (-)
adamts15a LOC106602881 coding upstream 529929 52089831 ~ 52124329 (-)
atf5a LOC106602866 coding upstream 716429 52276331 ~ 52281912 (-)
phldb1a LOC106602858 coding upstream 752298 52312200 ~ 52396922 (-)
arcn1a copd coding upstream 837929 52397831 ~ 52413158 (-)
G900805 NA non-coding downstream 1759 51454833 ~ 51455337 (-)
G900817 NA non-coding downstream 37519 51419238 ~ 51419577 (-)
G900816 NA non-coding downstream 38260 51418616 ~ 51418836 (-)
G900813 NA non-coding downstream 40928 51415967 ~ 51416168 (-)
G900809 NA non-coding downstream 45276 51411339 ~ 51411820 (-)
G900920 NA non-coding upstream 35141 51595043 ~ 51595578 (-)
G900956 NA non-coding upstream 98544 51658446 ~ 51658682 (-)
G901027 NA non-coding upstream 199264 51759166 ~ 51766002 (-)
G901153 NA non-coding upstream 284058 51843960 ~ 51853430 (-)
G901191 NA non-coding upstream 342806 51902708 ~ 51902970 (-)
G900807 NA other downstream 1154 51455500 ~ 51455942 (-)
G900070 NA other downstream 475346 50970763 ~ 50981750 (-)
G899739 LOC106602890 other downstream 706863 50743158 ~ 50750233 (-)
G899727 NA other downstream 735493 50720986 ~ 50721603 (-)
G902519 NA other upstream 1342292 52902194 ~ 52937648 (-)
casp3a LOC106602722 other upstream 2312337 53872239 ~ 53878829 (-)
G903619 primpol other upstream 2319642 53879544 ~ 53883773 (-)
cfap97 cfap97 other upstream 2522264 54082166 ~ 54111277 (-)
G904991 NA other upstream 3719597 55279499 ~ 55280341 (-)

Expression


Co-expression Network