LOC110534240 (bco2b)


Basic Information

Item Value
gene id LOC110534240
gene name bco2b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 51598627 ~ 51656987 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618975.2
aggaggaggaagatagtgaccaatgactttcttggtTTCGAAGAAAACATGTACCACTCTGcactttggtccacaccttcttccaccaacggccgtgacagtgaggctatgtacaATGAGACCATCACACAGTCTAGTGATGCCAAGCCAAAGGAGGTCAATAAGTGTAACCAGCTAGAGCTGAAGGGTCTGGAGTCTATCGCCCCTCTGGTGCGGTCCGTGGAGGAGACCCCAgagcccatctccacagaggtgcGTGGGACCATCCCTACCTGGATCCGAGGCAGCCTCCTCCGCAACGGCCCAGGGAAGTTTGAGTTCGGAAACCAACACTACAACCACTGGTTTGATGGGATGGCCATGCTGCACCAGTTTAAGATTGAGGATGGCAAGGTGACCTATAGGAGTCGCTTCCTGCAGAGTGATGCCTATAAGAAGAACAGCGCGAGGGACCGCATCATGGTGTCAGAGTTTGGCACGGTGGCCATGCCCGACCCCTGCAAGAACTTCTTCATGCGTTTCCTCTCTCGCTTCGAAATACCAGAGGCCACAGACAATGCCAGTGTTAGCTTTGTAAAGTACAAGGGAGACTGCTTTGTCAGCACTGAGACCAACTACATGTACAGGGTGGACCCAGAGAGCCTGGAGACACGGGATAAGGTGGACTGGACAAAGTTTATTGCTGTGAATACGGCCACTGCTCATCCTCACACTGAACCAGACGGCACTACATACAACATGGGCAACTCTTATGGCAGAAAAGGTGCCTTGTATAACATAATCAAAGTGCCCCCTAAGAAGAACAATCCTGAAGAAACTCTGGAGGGGGCTGAAGTGCTCTGCTCTATTGTCCCTGTAGACAAGGCCAGGCCCTCCTACTTCCACAGCTTCGCCATGTCAGAGAACTATGTGGTATTCATAGAGCAGCCTATCAAAATGGACCCGCTGAAGATCATCACAGccaagaagaggggggagagcatCTGTGAGGGGTTCTACTGGGACCCCAAGCAAGATACTGTCTTCCACCTGGTTGACAAACACACAGGACAGaCCAACTCTGTAAAGTTCCACACCAAGGCTCTGTCAGTGTTCCACCAGATCAATGCTTATGAGGAGGACGGCTTCCTAATGCTGGACATGTGTTGCTCTGACAATGGGGTGGCCCTTAACAACTACCTCATCCAGAACCTACGCAAGTCAGGGAAGGCTCTCGATCAGGTCTACAACACCATGTACAAAGCTTTTCCCCGGCGCTTTGTTCTGCCCCTCAATGTGACCAACGACACACCGACAGGTGTGAACCTCAACACACGTCCCACCAGCTCTGCCACTTCTTTCAAAACAGCTAAAGATAAGGTGGTGTGCCAGTTTGAGGCTCTCCATGGAGAGGACCTTTATGAGTACGGAGGCCTGGAGTTCCCTCAGATCAACTACAGCAAGTTCAACACACGGCCCTATCGCTACTTCTACGGCTGTGGCTTCAGGCACCTGGTGGGAGACTCAATCCTCAAGATTGACCTGGAGGGAAAGAAAGTCGAGgTGTGGTACCAGAAGGGTTTGTTCCCCTCAGAGCCTGTGTTCGTCCCCTCGCCAGACGCCGTGGAGGAGGACGATGGGGTCATCCTGTCCGTGGTGGTCACGCCCACTGAGGATAAGAGGACATTCCTCCTGGTTCTGAATGCCAGGACATGGGAGGAGCTGGGGAGAGCTGAGGTGCCTGTCAACGTTCCTTACGGTTTCCGGGGCCTTCAACCCCACCGCCTAGATCAGTGATACTGACCTACCAACTACCCctatctcccttcctccctcccattccctttTCTGTCCATGCAGGCACATGCCCAGAAAGGAGTCTACCTGTGCTCAGCTCATACACATGCCCCTCTCCCACTCGCCAAGTGCccttttgggtggtggtataatgaCGTTTTTTGTATACAGTTATTGTGGTTCTTCTGAACCAACTGCCCGAAAGTCCCCCCCCATCCCCTGTTCTCCttccattccttcctccctccttactTCCTCCCTTATACAACCCACTGTCATGAAACCCTCATGGTCAAACCCACTTAAACCCCCAGAAAAAGGATCAAGCAAGGGGGCTGCCTTCCTGTGCGATGCATGCAGGACCTGCGTGTTGTGGCAGAGATCATTGCAGCACAGTTGGCATTTTATTCATGCTGAGGACCGTAAGTGGGCACAGACAGACACCTATGGGATGAAAAAGGTTTTGTGTCCTGCAGATAATTTGGAAATGGTTGTCTTTTTGCTTTGTATGAGTTAGCCTACCTTTTGTATTAAAAACAACTTTTTCCCACGTTA

Function

symbol description
bco2b Predicted to enable beta-carotene 15,15'-monooxygenase activity and carotenoid dioxygenase activity. Predicted to be involved in carotene catabolic process and retinal metabolic process. Predicted to be active in mitochondrion. Is expressed in xanthophore. Orthologous to human BCO2 (beta-carotene oxygenase 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618975.2 True 2331 mRNA 0.52 14 51598627 51656987
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534238 bco2b coding downstream 38725 51457096 ~ 51559902 (-)
si:ch211-215c18.3 NA coding downstream 636441 50953168 ~ 50962186 (-)
LOC110534228 NA coding downstream 830807 50721690 ~ 50767820 (-)
slc25a15b slc25a15 coding downstream 961579 50626130 ~ 50637048 (-)
LOC110534220 LOC106602898 coding downstream 1116093 50463950 ~ 50482534 (-)
adamts15a LOC106602881 coding upstream 432844 52089831 ~ 52124329 (-)
atf5a LOC106602866 coding upstream 619344 52276331 ~ 52281912 (-)
phldb1a LOC106602858 coding upstream 655213 52312200 ~ 52396922 (-)
arcn1a copd coding upstream 740844 52397831 ~ 52413158 (-)
LOC110534249 LOC106602874 coding upstream 793223 52450210 ~ 52450882 (-)
G900920 NA non-coding downstream 3049 51595043 ~ 51595578 (-)
G900805 NA non-coding downstream 143290 51454833 ~ 51455337 (-)
G900817 NA non-coding downstream 179050 51419238 ~ 51419577 (-)
G900816 NA non-coding downstream 179791 51418616 ~ 51418836 (-)
G900813 NA non-coding downstream 182459 51415967 ~ 51416168 (-)
G900956 NA non-coding upstream 1459 51658446 ~ 51658682 (-)
G901027 NA non-coding upstream 102179 51759166 ~ 51766002 (-)
G901153 NA non-coding upstream 186973 51843960 ~ 51853430 (-)
G901191 NA non-coding upstream 245721 51902708 ~ 51902970 (-)
G901203 NA non-coding upstream 252521 51909508 ~ 51910763 (-)
G900807 NA other downstream 142685 51455500 ~ 51455942 (-)
G900070 NA other downstream 616877 50970763 ~ 50981750 (-)
G899739 LOC106602890 other downstream 848394 50743158 ~ 50750233 (-)
G899727 NA other downstream 877024 50720986 ~ 50721603 (-)
G902519 NA other upstream 1245207 52902194 ~ 52937648 (-)
casp3a LOC106602722 other upstream 2215252 53872239 ~ 53878829 (-)
G903619 primpol other upstream 2222557 53879544 ~ 53883773 (-)
cfap97 cfap97 other upstream 2425179 54082166 ~ 54111277 (-)
G904991 NA other upstream 3622512 55279499 ~ 55280341 (-)

Expression

LOC110534240(bco2b) Expression in all Baseline Samples

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LOC110534240(bco2b) Expression in each Bioproject

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LOC110534240(bco2b) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network