atf5a (LOC106602866)


Basic Information

Item Value
gene id atf5a
gene name LOC106602866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 52276331 ~ 52281912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618985.2
GCTAGGTGTGAATGAACTGATGCTCTCACTCAATAAATCGTCTCTCAGTCATCAAGTTCATCACAACAAAGAAGCAACAACAAGACTTCACTTCTGTCCCGGATTTTCCAAGGGAGCCATGGCTTGTTAAATTAGAGAAGAACTCGGACCCCCGAAAGACGCCGTGCTTTGCTCTTGCAACGCACCCCAAACTCACAAGAATTTTCAGCAAGAATGGAGTGTCATTATGCTCACCCAGCCCTGCTCACTGTGGCTCAACTCTCAGACCCCACCAACTCATATTGTACGATCGGACTAATCGGATTGAATCAAAAGACCAATAGACAAAATGATGGCAACGTCAGCAGCTCCTCTCTGGAAGACTCTTCGCGTCTGCCCGGCagaccccctcgctctctctcacccacagGCTAACCTCAGCCAATCACAGGAGTGCAGGGGGGAGGTGCCAGAGGAGAGCCAGCACTTAATTGGTGATGGTCTCACGGACTGGATGACGGAAGAAGTGGATTTCTCCTCGTACCTCCCaaaccctcacccctctccctcccccaattcctcccttcctccctcacccctccagcATGACATCCAGGTGCCCTCTGACTTGGAGGTCATGACTTCTCTGCTGCAAGAGGAACTCGCTCAACTGGAGGACTACTTCCTGTCTGAACCACTGCCGGAGAAAGGACCAAAACTGGGAAAATGCGACAAGGGTCCACCGCCAGTGGGTCCCCACCAGTCATACTACCAGTTGCCCTTTCATGCGTCATCATACTCCACCTCCAACCAATCGGAACACAGCCCTCTACTTGTTACCCTGGCAACTGGGGAACTAGACCTGCTGAGCTTTTGCGGAGGTGGGCCCATTGGGCGATCAAAATTGCCTAGACACACCCCTTACAGTTGTAGCAATCGCCCCAATGGGTGTAGTCGCAAAAGAGTTTCAGATGGGGTGAGGGTGGGCGAGGTCTACGAGAATAGCATATGGAGTTCCAAAGGAAGTAACCCATCAGTGACTCTAAGTGGCAGTTACAGCTGTGTAGAGGACGAGCGGGTAGTCGGGAAAGGTTACTGTCTAGGCAGCGGAGTTGAGATTCGAAGATGCCCTTTTTTACCCAAGGAAGAGAAAAATTGTCAGTTCGCGGAAGAGGTCATAGCCGTTGGCAGTGGGTATGGTGGCTTTGGCGGGCCGCTGGATATCCCACACAAGAAAGAGGAGCTGTTGATGTATGGCATGAGAGAAGTGCATGTcagttgtggtggtggaggatgTGCTAGTAGCAGTGGGATAGAATTGTTGAGTAGTAATGTCAAAGTTGGCGTAGTCGGTGAGTTGTCTTCCAAGATGTCCACTATTCCTTGGAAGACAGAGACTAGTGAGGGTTGTTATCTTCAGGCACCGTCCCAATCAGAGGCCTCCTACCACCACGGCTTCCAAGGGACGGTCAGCGAGCAGGTCAAGGCAGAGGGTTTAGATATGGGCCGTCAACATCATGACTTCCACTGTGGTGGGTTCCTAGAGGACCAGCAGGGCTCTGAGTGTCTGGCAATGGATAGGGAGGCTCTTGACAGGCAGGTGGTGTTGGGGTTGAAGGAGGACCCCTGTCCCCTCGCGAAGCCTGAGCTGGACGAAACAATGCCAGGGGAGGTCCACCACCCACCAGAGCGCAAGCAGAAGAAGAGAGACCAAAACAAGACTGCCGCTCATAGGTATCGCCAACGTAAAAGGGCAGAGCTGGACTGCCTTGAGGAGCAGCTGCACGGTCTGGAGGGGCATAACCGGGAACTTCGGGACAAAGCAGAGTCAGTGGAGAGGGAGATCCAGTATGTTAAAGACCTACTGATCGAGGTGTACAAAGCCCGCAGTCAGCGGCTCAAGCAATCGGACACCGACGCCTGATGATGAAGATAAGATGACGAAGACTTTCTGCAAGTAGATTTGAAGAAAAAATGACAGGGAAATGTTAGTTTTTCAATGTTTTGAAATGGAATATTacattttttctttttctttgggAGGGTCAGGGTGGGGGGCAACAAAGGGGTTCAATTGCATGTTTTGATGacgtgattttttttatttttacgagTCAAACAACTACTTTATACTTCCACTGTTTCGGCAATCGGCACTAACCAAGCAAGCCTGCACTGTGATGCTGTAATGTCTCAGCTGACAATCAATTTCTGAATGGGTTTCCTGTTGAATGGCGATGGGTTTGATTTCCACCATTGGTGTTTTTTATATACTGGTTAGACTAATGTGATTCAACTAAGGCCTTACACTGGTCTTGATGTCAATAACTTAGCTACTGGTTCAATATACTCATTAGCTTTTTATCAAAAGACAATCTTTGTTTATTTGTGGGAGCTTTGCACTATTTGTATATTTTCCCAAATTATTATTCCAATAATTGAAAACAAACTAATATAAATATGAATGCAAAAACAGCCTTTAGGGAAGACTTAAGATTTTGTTGAAAGTGTTGTCCCCTTAAATGCTAATTGCAATATGATACAATCAGTTTTATAGCTCAGGTTATGCAATTCATGCCCAAAGTTCTAGAAGTATGTAAGTTGGTAATTCTTGACTGAAGATTTTTTTGCATGGCAAAGACATTCATGGCTACTAAAATTAACGAGTTCTGTCTGTCTATATGATGCTGTATAGCTACTGTGCACTGATTCCATAGCAGCCTCACATTCCATGCTCTCTCTCAGCAAATTCACTTGTCTCTAGCTCTTTCCTAGTTGTTTCTCTTCACTGGATTAGATGGTATAGGATTTCAGAAATCAATGTGGGACCCTCTGTCTCTTTACTTGCTGTAAAAGCAAATCAGGGTTTGTGATTTTATATGGCGGGTATGCTCGTCTGATTTATAAAGACTTTTTCAATTGTGTCTTGAAGGAGAGATGGTAGGTAGGTAGTTAGCCTTTGCGTTTTTCTAAAAAAgaacaaaaaaactatttttcaCTAGAATGTTTGTGATAGCTTTTCATGTCGTTTCCCGCTTTTGTCTACGAGGATGCAGTGTCAATTAATTTAGTATAAACCTTTATTTTATAATTAGGTACAATTCTCAATTTTTCTAAAAACGGTCAATCTGCTTTAAGCAAATGTAACAATATATCATCTTTAAATTTGAAAATCTAATTGGATCTTTAGTGAATTAATCCAATTGAATTGCTGTTgcttttttaatgaatttaagtTGAAATGCAATAACTCTTAAATGTCCTAACGAATAGTTAAGATCTTAATATAATGTAATTATCTAATTATCTGTTATCAATCTTTTGGATGAATGAGTAGGACACTGCATCTTTTTCAAATATGGTCTGTTATCTTGGCGATATACAATCATGTTTCTGAAATACAGCTTTTAATGCAATGTGTATTAATGTTATTTTGTGATATTGAGATTCTATTACTTTCAATATTAAGCCTCACGCATTTCAGCAACACGATTACGACCAATAAGTTACACCTGATAAAATAACCAACCATTTAGTAATTTGGAAATAATTCCAATGTTTCCTCTCAATATATTTCCTTTGTGTTACATGTCACTCGTTTTATTCAAATAAAGTGATTTGTTGTCTACA

Function

NR:

description
uncharacterized protein LOC110534245

GO: NA

KEGG:

id description
K09044 ATF5; activating transcription factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618985.2 True 3609 mRNA 0.44 4 52276331 52281912
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Neighbor

gene id symbol gene type direction distance location
adamts15a LOC106602881 coding downstream 152002 52089831 ~ 52124329 (-)
LOC110534240 bco2b coding downstream 619344 51598627 ~ 51656987 (-)
LOC110534238 bco2b coding downstream 716429 51457096 ~ 51559902 (-)
si:ch211-215c18.3 NA coding downstream 1314145 50953168 ~ 50962186 (-)
LOC110534228 NA coding downstream 1508511 50721690 ~ 50767820 (-)
phldb1a LOC106602858 coding upstream 30288 52312200 ~ 52396922 (-)
arcn1a copd coding upstream 115919 52397831 ~ 52413158 (-)
LOC110534249 LOC106602874 coding upstream 168298 52450210 ~ 52450882 (-)
c2cd2l c2cd2l coding upstream 185222 52467134 ~ 52514799 (-)
ift22 ift22 coding upstream 344970 52626882 ~ 52629676 (-)
G901668 NA non-coding downstream 30311 52245819 ~ 52246020 (-)
G901665 NA non-coding downstream 31519 52244357 ~ 52244812 (-)
G901646 NA non-coding downstream 41959 52234162 ~ 52234372 (-)
G901582 NA non-coding downstream 85296 52190727 ~ 52191035 (-)
G901380 NA non-coding downstream 232236 52043839 ~ 52044095 (-)
G901728 NA non-coding upstream 14852 52296764 ~ 52297097 (-)
G902119 NA non-coding upstream 193047 52474959 ~ 52475361 (-)
G902129 NA non-coding upstream 213588 52495500 ~ 52503901 (-)
G902156 NA non-coding upstream 256823 52538735 ~ 52539526 (-)
G902157 NA non-coding upstream 258758 52540670 ~ 52541592 (-)
G900807 NA other downstream 820389 51455500 ~ 51455942 (-)
G900070 NA other downstream 1294581 50970763 ~ 50981750 (-)
G899739 LOC106602890 other downstream 1526098 50743158 ~ 50750233 (-)
G899727 NA other downstream 1554728 50720986 ~ 50721603 (-)
LOC110534220 LOC106602898 other downstream 1804453 50463950 ~ 50482534 (-)
G902519 NA other upstream 620282 52902194 ~ 52937648 (-)
casp3a LOC106602722 other upstream 1590327 53872239 ~ 53878829 (-)
G903619 primpol other upstream 1597632 53879544 ~ 53883773 (-)
cfap97 cfap97 other upstream 1800254 54082166 ~ 54111277 (-)
G904991 NA other upstream 2997587 55279499 ~ 55280341 (-)

Expression

atf5a(LOC106602866) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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atf5a(LOC106602866) Expression in each Bioproject

Bar chart with 21 bars.
atf5a(LOC106602866) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network