arcn1a (copd)


Basic Information

Item Value
gene id arcn1a
gene name copd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 52397831 ~ 52413158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001164069.2
CCTTCCATATTGAGACAGTAAATCAAACAGACGCAAGTTTCACTCCgcataaatattatagtttagaCACTAATACGTGGTATTACATTACAGAAACGGCACACGGATTTGTAGCACAAGGGATAACAACAAAATGGTGCTGTTGGCAGCAGCGGTGTGCACCAAGGCGGGCAAGGCCATCGTGTCGCGGCAGTTTGTGGAGATGACCCGGACTCGCGTGGAGGGCCTGCTGGCCGCCTTCCCCAAGCTGATGAACACTGGCAAGCAGCACACGTTTGTGGAGACTGAGAGCGTGCGCTACGTTTACCAGCCCTTGGAGAAGCTCTACATGGTGCTGGTCACCACCAAGAACAGCAACATCCTAGAGGACCTGGAGACACTACGCCTCTTCTCACGCGTGATCCCAGAGTACTGTCGGGTGCTGGAGGAAGGGGAGGTCTCGGAACACTGTTTTGACCTGATCTTTGCCTTTGATGAGATCGTGGCGCTGGGCTACAGGGAGAATGTCAACCTGGCCCAGATCAGaacattcacagagatggactcTCACGAGGAGAAGGTGTTCCGCGCCGTCCGAGAGaCCCAGGAGCGAGAGGCTAAGGCAGAAATGAGGAGAAAGGCGAAGGAGCTGCAACAGGCCAGGCGGGACGCGGACCGTTCAGGGAAGAAGTCTCCAGGGTTCTCCGGCGGGTTCGGCAGCATGTCCAGCAGCAGCAACGCTACCATCATCACAGACACCCTCATGGAGCCAGAGAAACCCAAGGCCTCACCTGTCCCTGCCAGGGCTAGTGGTCCCAGTAAGGCCCTGAAGCTGAGTGCCAGAGGGAAGGAGGTAGATGACTTTGTGGACAAGCTCAAGTCTGAGGGACAAGTCATCATGCCCAGCTCAGGGAAGAGGCCCTCCGAGGCATCCAAAGCCCTGCCTCCACCAGTTAACACAGAGAGTGTGCACCTGCGTTGTGAGGAGAAAATCAGCCTGACttgtgggagagatggagggctaCAGAACCTGGAGGTCCTGGGTATGATCACCCTCCGAGTGGCCGACGACAAGAACGGACGCATTCGCCTCACCATCAACAACGGTGACAAGAAGGGAGTCCAGCTGCAGACCCACCCTAACGTGGATAAGAAGCTGTTCACCACAGACTCTGTGCTGGGCCTGAAGAACCCAGACAAGTCCTTCCCTCTGAACAATGATGTGGGCGTGCTCAAGTGGAGGCTACAGACCACAGATGAGACCCTCATACCACTAACGATAAACTGCTGGCCCTCTGAGAGTGCCACTGGCTGTGATGTCAACATAGAGTACGAGCTTCAGGAAGAAGCACTTGAACTGAATGATGTAGTCATCTCTATTCCCATCCCGTCAGGTGTGGGTGCACCTGTGATTGGTGACCTGGACGGAGAGTATCGCCATGACAGCCGGCGGAACGTTCTAGAGTGGTGTTTACCCGTGGTGGACGTCAACAACAAGACAGGAAGTCTGGAGTTCAGCGTGGCAGGCCAGCCCAATGATTTCTTCCCTGTCAACGTCTCCTTCGTCTCCAAAGGAAACTACTGTGACATAACGGTGGCCAAAGTGTCCCAGGTAGATGGAGAGGTTCCAGTGAGGTTCTCCTCAGAGACATCGTTCCTGGTCGACAAGTATGAAATACTGTAATATATTCACATACAGTATTACCAACAAACATCAAGATCAGTGGATTGACATATgaaaaaatgaaacaaaatgaaAGTGAGAAGTGGACTTGAAACCCTTTtcaaaaagaaaaacccttcccACCATGCTTGCCAGCATTTAGTGTCTTTGTACATTTTTACCAGAAATCTATCAACTGATCGGCCTATAGCTGTATGTATAAAGCACCGCTCAATGCACCTGCAAGAAGGAATGGTAAAGTCAAACAGGACAACGTTAGATAACTGTATCCGGGTTAGGTTGGGTGGACCTGGGGGGTGATGACATCTGGGGTGGGCTTTGTGAATGACCCTCTCATTGGCCCAGTTTGTATCAAATCCATTGACAGACAGATTCTGTGAACTATTGGCTAATAGTTTTACAGATATGTCGTAATCATGTACGGAAATACTCTTTCATTACACATACTCCAATACAAACAGGCTTGCGGTCCATGGTATAACACTACAACCACTCTTTGCTTTGGCAAGAAGTACCATATTTTGTGATTGGTACTGAACTGATCTGAACTGCCTGTCTCCCACAAGGCTAAATCTTAGCTAAAATTATTAAGATTGCATGTTTTATAGTTTAGCTTTGCTCGAGATTGAAAGACCTCATtattaaataatttatttttcaTTACACTGATCTGTCTACAGGCTAGTTAATGTAATGGCATATTTTGTTTGTGAtattctatcaaatcaaatgcatGGAGTAATTCAATGCTGAAATAAGTTTTTGTACCAGACCAGTACAACTCAAGCACAGTAGTTGTATGTACTTTTTGCAATGGCGGGAGGTCATTCAAAGAAAAAGTCCTGTCTGAGATTTCAACTGTTTTGAGTCTACTTATAAAATGGAAATGATCTATCCAAGAACCATGACCTTCTAACACTCCAAACATCAAACCTTTTTATATGTCAATTATCAGATGCTTTTATCCTAAGCGTCTTGGAGTACAGTGAGTGCTTACATATTATAACATACGTAACCCcgatgggaatcgaacccacaacacATGCTCTTATCAACTGTGCCACGGGAGAACCCTGTCCATCAACACCACCCACAGTCCAACCTCAAACCAGCCCCGTTACAATAAGCCCCCATGGTTATTATGTATGTATGAATGAATGTCAGGGCTCTTCTTGTTTCAGAGTGTATCTATATAGATGGCCATATTCACCTTGACTTTGCTTATGAAATAcaattgagagagggagaagttaaATAATATTTGTCTttgttggattttttttcttttgaAATTCTGAATTGTATGGGATTCAGATTGGCAGTGAATCAGACTTTTGTAACCCTATAGAATAATGATCATGGGTAATTAACATTCCAATGTAAACATGAAAAAGATTAAAGTGTATTATAAACTCTGAA

Function

symbol description
copd coatomer subunit delta

NR:

description
coatomer subunit delta-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0030126 COPI vesicle coat cellular_component
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K20471 COPD, ARCN1, RET2; coatomer subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001164069.2 True 3082 mRNA 0.46 10 52397831 52413158

Neighbor

gene id symbol gene type direction distance location
phldb1a LOC106602858 coding downstream 909 52312200 ~ 52396922 (-)
atf5a LOC106602866 coding downstream 115919 52276331 ~ 52281912 (-)
adamts15a LOC106602881 coding downstream 273502 52089831 ~ 52124329 (-)
LOC110534240 bco2b coding downstream 740844 51598627 ~ 51656987 (-)
LOC110534238 bco2b coding downstream 837929 51457096 ~ 51559902 (-)
LOC110534249 LOC106602874 coding upstream 37052 52450210 ~ 52450882 (-)
c2cd2l c2cd2l coding upstream 53976 52467134 ~ 52514799 (-)
ift22 ift22 coding upstream 213724 52626882 ~ 52629676 (-)
ftr82 LOC106602865 coding upstream 224618 52637776 ~ 52643467 (-)
spns2 LOC106602867 coding upstream 292807 52705965 ~ 52847128 (-)
G901728 NA non-coding downstream 100734 52296764 ~ 52297097 (-)
G901668 NA non-coding downstream 151811 52245819 ~ 52246020 (-)
G901665 NA non-coding downstream 153019 52244357 ~ 52244812 (-)
G901646 NA non-coding downstream 163459 52234162 ~ 52234372 (-)
G901582 NA non-coding downstream 206796 52190727 ~ 52191035 (-)
G902119 NA non-coding upstream 61801 52474959 ~ 52475361 (-)
G902129 NA non-coding upstream 82342 52495500 ~ 52503901 (-)
G902156 NA non-coding upstream 125577 52538735 ~ 52539526 (-)
G902157 NA non-coding upstream 127512 52540670 ~ 52541592 (-)
G902160 NA non-coding upstream 133672 52546830 ~ 52547488 (-)
G900807 NA other downstream 941889 51455500 ~ 51455942 (-)
G900070 NA other downstream 1416081 50970763 ~ 50981750 (-)
G899739 LOC106602890 other downstream 1647598 50743158 ~ 50750233 (-)
G899727 NA other downstream 1676228 50720986 ~ 50721603 (-)
LOC110534220 LOC106602898 other downstream 1925953 50463950 ~ 50482534 (-)
G902519 NA other upstream 489036 52902194 ~ 52937648 (-)
casp3a LOC106602722 other upstream 1459081 53872239 ~ 53878829 (-)
G903619 primpol other upstream 1466386 53879544 ~ 53883773 (-)
cfap97 cfap97 other upstream 1669008 54082166 ~ 54111277 (-)
G904991 NA other upstream 2866341 55279499 ~ 55280341 (-)

Expression


Co-expression Network