Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110534273 |
| gene name | LOC106602713 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048574.1 |
| NCBI id | CM023228.2 |
| chromosome length | 87811138 |
| location | 53561543 ~ 53600267 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: tetraspanin-5-like |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| K17345 | TSPAN5; tetraspanin-5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021619035.2 | True | 3498 | mRNA | 0.39 | 10 | 53561543 | 53600267 |
53,552,000
53,556,000
53,560,000
53,564,000
53,568,000
53,572,000
53,576,000
53,580,000
53,584,000
53,588,000
53,592,000
53,596,000
53,600,000
53,604,000
53,608,000
53,612,000
53,616,000
53,620,000
53,624,000
53,628,000
53,632,000
NC_048574.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110534272 | LOC106602712 | coding | upstream | 7540 | 53522853 ~ 53554003 (+) |
| LOC110534270 | LOC106602803 | coding | upstream | 60760 | 53495704 ~ 53500783 (+) |
| LOC110534269 | LOC106591825 | coding | upstream | 82177 | 53453977 ~ 53479366 (+) |
| cntrob | LOC106602799 | coding | upstream | 207333 | 53313930 ~ 53354210 (+) |
| LOC118966635 | fis1 | coding | upstream | 428147 | 53126760 ~ 53133396 (+) |
| LOC110534276 | LOC106602715 | coding | downstream | 15658 | 53615925 ~ 53647711 (+) |
| LOC110534277 | lgi2 | coding | downstream | 108115 | 53708382 ~ 53718910 (+) |
| LOC110534278 | ccdc149 | coding | downstream | 119339 | 53719606 ~ 53741239 (+) |
| LOC110534280 | LOC106602719 | coding | downstream | 158567 | 53758834 ~ 53773112 (+) |
| LOC110534281 | LOC106602720 | coding | downstream | 196457 | 53796724 ~ 53857235 (+) |
| G902771 | NA | non-coding | upstream | 4172 | 53557151 ~ 53557371 (+) |
| G902707 | NA | non-coding | upstream | 41755 | 53516107 ~ 53519788 (+) |
| G902759 | NA | non-coding | upstream | 56188 | 53504752 ~ 53505355 (+) |
| G902756 | NA | non-coding | upstream | 58843 | 53502401 ~ 53502700 (+) |
| G902713 | NA | non-coding | upstream | 79328 | 53480973 ~ 53482215 (+) |
| G902798 | NA | non-coding | downstream | 6070 | 53606337 ~ 53606571 (+) |
| G902801 | NA | non-coding | downstream | 10333 | 53610600 ~ 53610950 (+) |
| G902802 | NA | non-coding | downstream | 11427 | 53611694 ~ 53611973 (+) |
| G902808 | NA | non-coding | downstream | 52227 | 53652494 ~ 53654838 (+) |
| G902831 | NA | non-coding | downstream | 60525 | 53660792 ~ 53660997 (+) |
| LOC110534253 | hinfp | other | upstream | 1025893 | 52532434 ~ 52542498 (+) |
| G901849 | LOC106602874 | other | upstream | 1086178 | 52450218 ~ 52475365 (+) |
| G898894 | LOC106603005 | other | upstream | 3523858 | 50034990 ~ 50037685 (+) |
| LOC110534189 | LOC106602925 | other | upstream | 4128585 | 49426785 ~ 49432958 (+) |
| G902840 | LOC106602714 | other | downstream | 69853 | 53670120 ~ 53674811 (+) |
| helt | helt | other | downstream | 377164 | 53977386 ~ 53980090 (+) |
| G904621 | LOC106567469 | other | downstream | 1630632 | 55230899 ~ 55231255 (+) |
| G904663 | NA | other | downstream | 1694970 | 55295237 ~ 55296054 (+) |
| G906606 | LOC100136012 | other | downstream | 3056032 | 56656299 ~ 56656552 (+) |
