LOC110534276 (LOC106602715)


Basic Information

Item Value
gene id LOC110534276
gene name LOC106602715
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 53615925 ~ 53647711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619040.2
CAAATTGACGCCGTCTCACAACCGAGGGGTAAATGTCACCATAGTTGAACCACTTTAGACGTACGTTGTAAATGTAGTTTTATTGTTTTAAACTTGTTGCTTAAATTTGGGCCAAATTCAGAAGTATCGCTACTGCTGTGAAACTACTGTTTTAGCCTATATGTAATTGTCTCGCTGATTTTATCATGATAGGCTACTGCTTGAGGACGAAATATCGATGTCAATTCGCATTTGTGCATGCGCTGTTGATAAGCCTATCATCCGATCATTTAGGTGTAGCGTAAATTAACTGCTCCCGTATCCCACAGCGACAGTGGGCATTGCACCTATCGATATTTGAAGGGATTGTTAAAACTCTGCGCTACAAGTTAATGATTTGCTCTTTATCTCGTACTTAGTTCTTGAGCGTGGAGTTTGGATTCTGCCCTCCACATCGTTTAACATAATTTGAGTAGCTTCAGGTAGCTGAGCCTTTCTTTCTGGCCTGTGAGCGCCTATTCAGTAAAGGTTTACCTGCAATCACCTTCTTGCTCCTAATATATAGTGCAAAATGTTAGCTCTCTTTGTGCTTTTGCTCTGCATGACATCTTCATTTTCTGCTTCTAATAGAGGTGCTGGTGCTGCTGGACCCAGGCTGAACAATGACCGGTTGTACAAATTCAGCTACACCACGGAGGTGCTGGTGGACAGGGCCAAGGGGTCAAAAGATGGCAGTGCTGGCTATAGGATCTCCAGTGACGTGGATGTCAATTTAGTGTGGAGAGACCCCAGCAGCAAGGACGACCAGCTCATACAACTGGTgATCTCAAATGTGAAGATAAAAAATGTGGCCCCACGCTCAGCCAAGAAGAACATATTCCATGGCGCAACAACGCAAAGCCTTCTCGGAGAGAAGAAGCTGGCAGCACTGGAAAGGCCGTTCATGGTGCACCTGAAAAACGGAAAGGTGAGCAGCTTTTACTGCTATAAGGCGGAGCCTGCTTCCATTAAGAACTTGAAGAGGGGTGTGGCCAGCCTGCTGCAGGTGCAATGCAGATCTGGGAAAGTCATAGAGAATGACGTGTCCGGGAGGTGTACGGTAGAGTATAAGGCTGCCCAGGGCCAGGTGACAAGGACCAAGGCTTTGGAGACCTGCAAGACCGCAGAGACCGGCTTCACCACCTACATTCAGGTCCTGGGCGTGAGTGGGGAGTCCAGCTCTGTCACTGTTTTCACCCTGGAGGATGGCTTCATTAAGTCAGCCATAGCCAAGGAGACTCACATCTTAGCAGTCAATGCACGCCGCACCACCGCTGCTAAAATAGTGTCCAGGCAAAGCTTGACGCTGGTAGCAATTGAGGCTGGGCCGTTTGAGGCTGCGGGGAAGAATGTCGCCAGTGTTGTCAAATCACTTGATGAGAAATTGTTTGCTGTTGGTGTGGCAGCTGAGAAGGTCAAATCCCAATGCAAGGGCTGTCAATCGCTGTTTGAGCACTGGCAAGCAGTCCAGAAGCAGTTTGAACCAGATAGCTTGTCTAAGGCCATCGCTCCCCGAAGCTTCCTGGCTCTCATCCAGAGCATAAGGAAAGCCTCCAAGGACGAGATCCTCCAAGTGCTGAAGCGCTCCAGCAAGACTGCCTTACCTCAGGTGGTGGACGCCGTGACCTCGTCCCAGACGCCCGATTCCTTGGACGCCATGCTGCAGTTCCTCAACTTTGCCGACCCCAAAGGCCTGGTTCTGCAGGAGAGGTTCCTGTATGCCTGCGGCTTTGCCTCGCACCCCAACGAGAGAATGCTCCAAGCTTTGGTGGACATTTCAAAGGGCAAGATTGGCAGTAAAGACATCAAAGAATCGGTGGTGATCATCATGGGTGCCATTGTGCACAAACTCTGTCAAAAAGGAGGTTGCGAGCTACCAACTGTGGTTGAGGTGAAGAAGATGATTCTGGAAGGTCCCGACAGCACGCAGGTGGTGTCAGACATTCAGATGTACCTGCTAGCGCTGAAGAACTCCCTGCTGCCCGAGGCCATTCCCCTGTTTTCCAAATATGCTGAGTCGGAGGTCGGGGCATACTGCACTATCTCCCTCACAGCCCTGCAGAGATACGACGTCGCCCTCATCACAGATGAGGTGAAGCAGACGGTGAACCGAGTGTACCACCAGAACCGCCGGGTCTACGAGAAGAATGTGAGGGCAGCAGCTGCGGATGTCGTCTTTAGCAGCAACCCCTCATACATGGAGGTGAAGAATGTGCTCCTGTCCATCGGAAACCTTCCCAAAGAGTTGAACAAGTACATGCTTTCCAAGGTCAAGGACATCCTCCATTTTGAAATGCCTGCCAGCAAAATTCTACGGCAAGCCATGAAGGACATGATCTCCCACAACTATGACCGCTTCTCCAAGGTTGGGTCATCCTCTGCTTTCTCTGGCTTCATGGCACGTACCGCTGATGCCACTACCACCTACAGTCTGGACATTCTGTACTCTGGCTCTGGGGTCCTCAGGAGGAGCAACATGAACATCTACGGAGCCAGTAATGGCGCCCTGCTACATGGCCTCCAGGTGGCAATTGAGGCCCAAGGCATGGAGTCCCTGATCGCGGCCAAGCCGGATGAAGGCGAGGAGGACCTGGAGTCCTTCGCTGGGATGTCGGCTCTGCTTTTCGACGTCCAGCTGCGGCCTGTGACCTTCTTCAAGGGCTACAGTGACCTCATGTCCAAGATGTTCTCCATGTCCGGCGAGCCCATGAACGTGGTAAAGGGCCTGATCCTGCTCACTGACCACTCTCAGgTCATCCAGCTTCAGTCTGGGCTGAAGGCCAATGCCGAGTTCCAGGGTGGCTTGGCCATCGACATCTCAGGAGGCATGGAGGTCAGCCTGTGGTACAGGGAGTCAAAGACCAGCGTCAACAACAGGGGAGCCATGGTGGTGACTGGGAATGTGACCGTGGACATGGACTTTGTGCGCACTGGGATGGAGGTGAGCTTTGAGACAGAGGCGTCTCTAGACTTTATCACCACGGTCCAGTTCTCGGAGTACCCTTTCCTGGTGTGCATGCAGATGGACAAGACCACCTTCCCCTTCAGTGAGTCCCTAACAAAATACGAGAGCCTGCCATCGGGGAAGAGCTACGTGTCACGCAGGGGCCACAAGCAGCTGTTGCCTGGCTCAGAGTTCCCACTCCACCAGGAGAACTCCAACATGTGCAAGAGGGTGTTTGACTCAGACTGGTAGTCTTCTCTGGGTCAATCCATCGGTAAGAAGATGGAAGATCTTTTGCAGAGTGTAGAGTTATGGATCAACAACTCTATTTTGTTATTATGTCACAGTGTAAACAGTGTGTTGTATGAGGCGGATAAATGGATGCTAGCTAGTTAAGATATGACCATTGTAAAATGTGTGCCTTTTTTGTTGATCTGATTGGAAAATGGGCAACATTTTTCACCGCTTTACGTCGGAGTTCAGTTTACTGAAAAATTGCTAACTAGAGGCTAACTTGTTAGCTGTTTACTACTATTTATCTCCCTTTCGATCCCACAACACAATGCGTTATTTACAGTGTGACAATAGTGAAATAAGGTTATTCTTTTAATGAGTCCTACTTGAAATTCTGTCTGGAgagttatttattattattttttaaagctATCCAGGAACACCTACTGTATCGCACCACAGGCAAAAAACATTAAatggatttctttttttttttttacaacataaacatgtttttatttcaaATCAGGAATTTCTCTGGTGACTTTATGAATTTGTTTGCATATCTATTTATATGGGTAGATGAGTACCACATTATGTGGTATATACCCAATATAGCTATGTGATACAACACCATATTCACCTATGTAAATATGGTACATAGCTTTGGGTGAGTTGATGCTATAGTTGAATTTGCTGTAATTTACATAAATGCTCACATTACACAGTTTCTAGTTTGTGGATGTGGTTTCCATGGCTACAGAGATTGAATTACACTAAAGTCATTGCGTAACAATGTAATCATTACTTGATTCACTCTGTAACAAGCTTGAAGGAGCTGTTACATGAGACCAGATAACACAGGGttaatttatttaattaatttctATAATTTGAATTTATGGATGTTAAACATGTATATCAATAGGAAAATGTATGAAGAATGTATTTACATTTGTAATTGGGCCTATTTACATAATTTGGTCCTGTATCCCTAAGAAATGTGACTTAATATTATAATTATTACATTAAACctttgatatatatttttttg

Function

NR:

description
microsomal triglyceride transfer protein-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0007586 digestion biological_process
GO:0015909 long-chain fatty acid transport biological_process
GO:0001579 medium-chain fatty acid transport biological_process
GO:0005319 lipid transporter activity molecular_function

KEGG:

id description
K14463 MTTP, MTP; microsomal triglyceride transfer protein large subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619040.2 True 4250 mRNA 0.47 17 53615925 53647711
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534273 LOC106602713 coding upstream 15658 53561543 ~ 53600267 (+)
LOC110534272 LOC106602712 coding upstream 61922 53522853 ~ 53554003 (+)
LOC110534270 LOC106602803 coding upstream 115142 53495704 ~ 53500783 (+)
LOC110534269 LOC106591825 coding upstream 136559 53453977 ~ 53479366 (+)
cntrob LOC106602799 coding upstream 261715 53313930 ~ 53354210 (+)
LOC110534277 lgi2 coding downstream 60671 53708382 ~ 53718910 (+)
LOC110534278 ccdc149 coding downstream 71895 53719606 ~ 53741239 (+)
LOC110534280 LOC106602719 coding downstream 111123 53758834 ~ 53773112 (+)
LOC110534281 LOC106602720 coding downstream 149013 53796724 ~ 53857235 (+)
primpol primpol coding downstream 231176 53878887 ~ 53902069 (+)
G902802 NA non-coding upstream 3952 53611694 ~ 53611973 (+)
G902801 NA non-coding upstream 4975 53610600 ~ 53610950 (+)
G902798 NA non-coding upstream 9354 53606337 ~ 53606571 (+)
G902771 NA non-coding upstream 58554 53557151 ~ 53557371 (+)
G902707 NA non-coding upstream 96137 53516107 ~ 53519788 (+)
G902808 NA non-coding downstream 4783 53652494 ~ 53654838 (+)
G902831 NA non-coding downstream 13081 53660792 ~ 53660997 (+)
G902834 NA non-coding downstream 15750 53663461 ~ 53663715 (+)
G902837 NA non-coding downstream 17327 53665038 ~ 53665269 (+)
G902841 NA non-coding downstream 30318 53678029 ~ 53678388 (+)
LOC110534253 hinfp other upstream 1080275 52532434 ~ 52542498 (+)
G901849 LOC106602874 other upstream 1140560 52450218 ~ 52475365 (+)
G898894 LOC106603005 other upstream 3578240 50034990 ~ 50037685 (+)
LOC110534189 LOC106602925 other upstream 4182967 49426785 ~ 49432958 (+)
G902840 LOC106602714 other downstream 22409 53670120 ~ 53674811 (+)
helt helt other downstream 329720 53977386 ~ 53980090 (+)
G904621 LOC106567469 other downstream 1583188 55230899 ~ 55231255 (+)
G904663 NA other downstream 1647526 55295237 ~ 55296054 (+)
G906606 LOC100136012 other downstream 3008588 56656299 ~ 56656552 (+)

Expression

LOC110534276(LOC106602715) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
End of interactive chart.

LOC110534276(LOC106602715) Expression in each Bioproject

Bar chart with 19 bars.
LOC110534276(LOC106602715) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network