LOC110534280 (LOC106602719)


Basic Information

Item Value
gene id LOC110534280
gene name LOC106602719
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 53758834 ~ 53773112 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933375.1
aacgtgggagagacaaaaaGGTGGCATTagccagcggcggcttcccgCATGCGTGATTCATTTGCAGTGTGGAAGAGGAGGgatgaacatctcctgctctgactgctgcGCGAGGACTGGGCCACATGAAAGACCGAGATCGCGACAGGGACCGTGACGAGCGCTCtaaagacagggagagggacagggaccgCGACAGAGATCGGGACCGGGACCGAGATAGGGAAGTGAAGCCCTCTGTCGTGCCCCCCAACACCATGATGGCCGTTGGAGGCATGCTTCCTCTCAAGCAGACAGCCATGCAGCAGCAGATCAACCCGTTCACAAACCTGCCCCACACACCACGCTACTATGAGATCTTGAAGAAGAGGCTGCAGCTGCCTGTGTGGGAGTACAAGGAGCGCTTCAATGACATCCTGGCACGCCACCAGAGCTTTGTGCTTGTCGGAGAGACGGGCTCCGGGAAAACCACACAGATCCCCCAATGGTGTGTGGACATGGTGAAGGGCTTGGGTGGCCCCAAGAAGGCGGTGGCCTGTACCCAGCCCAGAAGGGTGGCAGCCATGAGCGTGGCCCAAAGGGTGGCCGACGAGATGGATGTCATGCTGGGCCAGGAGGTGGGCTACTCCATACGATTTGAGGACTGCAGCTCCGCCAAGACCATACTGAAGTATATGACAGACGGTATGTTGCTTCGGGAAGCCATGAACGATCCCTTGCTGGAGCGGTATGGCGTGATCATCCTGGATGAGGCCCACGAGAGAACGCTGGCCACGGACATCCTAATGGGAGTATTGAAGGAGGTGGTCCGACAGAGGTCAGACCTCAAGGTGATTGTGATGAGTGCCACATTAGACGCCGGGAAGTTCCAAGTGTACTTTGACAGCTGTCCGCTGCTGACCATTCCCGGACGCACACACCCCGTGGAGATCTTCTACACCCCTGAGCCGGAGCGGGACTACCTGGAAGCCGCCATCCGCACGGTCGTTCAGATCCACAtgtgtgaggaagaggagggggactgTCTGCTGTTCCTCACCGGACAAGAGGAAATTGACGAGGCCTGTAAACGGATCAAACGGGAGATCGACGACTTGGGACCTGAAGTCGGAGACATCAAAGTCATTCCACTATATTCCACACTGCCTCCCCAGCAGCAACAAAGAATCTTTGAGGCCGCACCCCCCAGGAAGCCCAGCGGTGCGATAGGAAGAAAGGTTGTGGTTTCGACAAACATTGCTGAGACATCCCTTACCATCGACGGAGTGGTGTTTGTGATCGATCCCGGTTTTGCCAAGCAAAAGGTGTACAATCCTCGTATCAGGGTGGAGTCTCTCCTGGTAACGGCGATCAGCAAAGCCTCGGCGCAGCAGAGGGCGGGCCGTGCCGGCAGGACACGGCCAGGGAAGACTTTCCGCCTCTACACTGAGAAAGCCTACAAGACCGAGATGCAGGACAACACGTATCCTGAGATTCTCCGGTCCAACTTGGGTTCTGTCGTGTTGCAGTTGAAGAAGCTGGGTATCGATGACCTGGTGCACTTTGACTTCATGGACCCACCAGCCCCGGAGACCCTGATGCGGGCGCTGGAGCTGCTCAACTACCTGGCGGCGCTCAACGACGACGGCGACCTGACAGAGCTGGGCTCCATGATGGCAGAGTTCCCGTTGGACCCACAGCTGGCCAAGATGGTGATCGCCAGCTGCGAGTTCAACTGCTCCAACGAGATCCTCTCCATCACCGCCATGCTGTCAGTCCCGCAGTGTTTCGTCCGCCCCACCGAGGCTAAGAAGGCGGCGGACGAGTCCAAGATGCGGTTCGCCCACATCGACGGAGACCACCTGACGCTCCTCAACGTCTACCACGCCTTCAAACAAAACCACGAGTCTACACAGTGGTGCTACGACAACTTTGTGAACTACCGTTCGCTGATGTCGGCCGACAACGTGCGCTCGCAGCTGTCCCGGATCATGGACCGCTTCAACCTGCCCCGGCGCAGCACCGAATTCACCAGCAGGGACTACTACATCAACATCCGCCGAGCGCTAGTCACAGGCTTTTTCATGCAGgTGGCTCATTTGGAGCGCACGGGCCATTATCTCACAGTCAAGGACAACCAGGTGGTCCAGCTACACCCCTCTACCGTCCTGGACCACAAGCCAGAGTGGGTGCTCTACAATGAGTTTGTCCTCACAACCAAGAACTACATTCGCACCTGCTCGGATATCAAACCGGAATGGCTGGTGAAGGTTGCTCCTCAGTACTACGAAATGGGCAACTTCCCACAGTGTGAAGCCAAGAGGCAGTTGGAGCGAATCGTTGCCAAACTCCAGACCAAGGAGTATTCCCAGTACTGATTAACAGCGACTGGAGAGAGGAAGACATCCTTGAAAGAGCTTGGCACAATTCATACTTTAAAAGTTGTATCCTATCTTCAATCTTAATGTTTCTCTCGATTCAAGATATGATTTTTATAACTTTTGTTTGTGGTTTTTCTGTCCATTCAATAGCAACGTGTATAACTGTAAGCATTTATGAAATTGATCTCAATGGTGAATATTAGGCTATTCTGATTAGAGATTTTCGAAAAGGAATTCAATTAACATGTTAAGCATGAGAATTCATGTGGATATTGTTATGTTCCTCTAGGAAATTGTGAACCCTGAGAAAGTGTACTTGCCTAGGTTGTCCTTGTTTCTTCAATAAAGGAGCTTCGACTTGAATAAAACCATGAATAATAGCTCATGGTCTTTGATTGTCTACTGGTACGGGAATTACTACTAAAAAACATGTTATGGGTCTAATCCTAGAAGTACATATAGAATCCCTATTCGTTTAGTGACCTCTGTGGGTCAAGTAGGCCCATGAAGATTTGTCATAACTTTGATCATGTGTTTATACCACATTAAAAGGTAATACAACTA
>XM_036933376.1
cttcccgCATGCGTGATTCATTTGCAGTGTGGAAGAGGAGGgatgaacatctcctgctctgactgctgcGCGAGGACTGGGCCACATGTGAGTGCTTTGGGACCCACCGCAGCACccgctgctcgttgagaagaGAAAGACCGAGATCGCGACAGGGACCGTGACGAGCGCTCtaaagacagggagagggacagggaccgCGACAGAGATCGGGACCGGGACCGAGATAGGGAAGTGAAGCCCTCTGTCGTGCCCCCCAACACCATGATGGCCGTTGGAGGCATGCTTCCTCTCAAGCAGACAGCCATGCAGCAGCAGATCAACCCGTTCACAAACCTGCCCCACACACCACGCTACTATGAGATCTTGAAGAAGAGGCTGCAGCTGCCTGTGTGGGAGTACAAGGAGCGCTTCAATGACATCCTGGCACGCCACCAGAGCTTTGTGCTTGTCGGAGAGACGGGCTCCGGGAAAACCACACAGATCCCCCAATGGTGTGTGGACATGGTGAAGGGCTTGGGTGGCCCCAAGAAGGCGGTGGCCTGTACCCAGCCCAGAAGGGTGGCAGCCATGAGCGTGGCCCAAAGGGTGGCCGACGAGATGGATGTCATGCTGGGCCAGGAGGTGGGCTACTCCATACGATTTGAGGACTGCAGCTCCGCCAAGACCATACTGAAGTATATGACAGACGGTATGTTGCTTCGGGAAGCCATGAACGATCCCTTGCTGGAGCGGTATGGCGTGATCATCCTGGATGAGGCCCACGAGAGAACGCTGGCCACGGACATCCTAATGGGAGTATTGAAGGAGGTGGTCCGACAGAGGTCAGACCTCAAGGTGATTGTGATGAGTGCCACATTAGACGCCGGGAAGTTCCAAGTGTACTTTGACAGCTGTCCGCTGCTGACCATTCCCGGACGCACACACCCCGTGGAGATCTTCTACACCCCTGAGCCGGAGCGGGACTACCTGGAAGCCGCCATCCGCACGGTCGTTCAGATCCACAtgtgtgaggaagaggagggggactgTCTGCTGTTCCTCACCGGACAAGAGGAAATTGACGAGGCCTGTAAACGGATCAAACGGGAGATCGACGACTTGGGACCTGAAGTCGGAGACATCAAAGTCATTCCACTATATTCCACACTGCCTCCCCAGCAGCAACAAAGAATCTTTGAGGCCGCACCCCCCAGGAAGCCCAGCGGTGCGATAGGAAGAAAGGTTGTGGTTTCGACAAACATTGCTGAGACATCCCTTACCATCGACGGAGTGGTGTTTGTGATCGATCCCGGTTTTGCCAAGCAAAAGGTGTACAATCCTCGTATCAGGGTGGAGTCTCTCCTGGTAACGGCGATCAGCAAAGCCTCGGCGCAGCAGAGGGCGGGCCGTGCCGGCAGGACACGGCCAGGGAAGACTTTCCGCCTCTACACTGAGAAAGCCTACAAGACCGAGATGCAGGACAACACGTATCCTGAGATTCTCCGGTCCAACTTGGGTTCTGTCGTGTTGCAGTTGAAGAAGCTGGGTATCGATGACCTGGTGCACTTTGACTTCATGGACCCACCAGCCCCGGAGACCCTGATGCGGGCGCTGGAGCTGCTCAACTACCTGGCGGCGCTCAACGACGACGGCGACCTGACAGAGCTGGGCTCCATGATGGCAGAGTTCCCGTTGGACCCACAGCTGGCCAAGATGGTGATCGCCAGCTGCGAGTTCAACTGCTCCAACGAGATCCTCTCCATCACCGCCATGCTGTCAGTCCCGCAGTGTTTCGTCCGCCCCACCGAGGCTAAGAAGGCGGCGGACGAGTCCAAGATGCGGTTCGCCCACATCGACGGAGACCACCTGACGCTCCTCAACGTCTACCACGCCTTCAAACAAAACCACGAGTCTACACAGTGGTGCTACGACAACTTTGTGAACTACCGTTCGCTGATGTCGGCCGACAACGTGCGCTCGCAGCTGTCCCGGATCATGGACCGCTTCAACCTGCCCCGGCGCAGCACCGAATTCACCAGCAGGGACTACTACATCAACATCCGCCGAGCGCTAGTCACAGGCTTTTTCATGCAGgTGGCTCATTTGGAGCGCACGGGCCATTATCTCACAGTCAAGGACAACCAGGTGGTCCAGCTACACCCCTCTACCGTCCTGGACCACAAGCCAGAGTGGGTGCTCTACAATGAGTTTGTCCTCACAACCAAGAACTACATTCGCACCTGCTCGGATATCAAACCGGAATGGCTGGTGAAGGTTGCTCCTCAGTACTACGAAATGGGCAACTTCCCACAGTGTGAAGCCAAGAGGCAGTTGGAGCGAATCGTTGCCAAACTCCAGACCAAGGAGTATTCCCAGTACTGATTAACAGCGACTGGAGAGAGGAAGACATCCTTGAAAGAGCTTGGCACAATTCATACTTTAAAAGTTGTATCCTATCTTCAATCTTAATGTTTCTCTCGATTCAAGATATGATTTTTATAACTTTTGTTTGTGGTTTTTCTGTCCATTCAATAGCAACGTGTATAACTGTAAGCATTTATGAAATTGATCTCAATGGTGAATATTAGGCTATTCTGATTAGAGATTTTCGAAAAGGAATTCAATTAACATGTTAAGCATGAGAATTCATGTGGATATTGTTATGTTCCTCTAGGAAATTGTGAACCCTGAGAAAGTGTACTTGCCTAGGTTGTCCTTGTTTCTTCAATAAAGGAGCTTCGACTTGAATAAAACCATGAATAATAGCTCATGGTCTTTGATTGTCTACTGGTACGGGAATTACTACTAAAAAACATGTTATGGGTCTAATCCTAGAAGTACATATAGAATCCCTATTCGTTTAGTGACCTCTGTGGGTCAAGTAGGCCCATGAAGATTTGTCATAACTTTGATCATGTGTTTATACCACATTAAAAGGTAATACAACTA
>XM_021619044.2
CCTCTGCCCGAACACAACCAGCGAGCTAAAACAAACTGCTTCCGGGTTACCCGAATTTGCTTCCTCGCGCGGAACACTAGCTTGCCGGTTGTAAAGGAAACTAGCTAAATATACGCTGTTATTTTAAATCTGTGTTTATTCATCATGTCTAAAAGACACCGTTTAGATTTAGGCGACGACTACTCCAATAAAAAGCGATCTGATGGGAAAGACCGAGATCGCGACAGGGACCGTGACGAGCGCTCtaaagacagggagagggacagggaccgCGACAGAGATCGGGACCGGGACCGAGATAGGGAAGTGAAGCCCTCTGTCGTGCCCCCCAACACCATGATGGCCGTTGGAGGCATGCTTCCTCTCAAGCAGACAGCCATGCAGCAGCAGATCAACCCGTTCACAAACCTGCCCCACACACCACGCTACTATGAGATCTTGAAGAAGAGGCTGCAGCTGCCTGTGTGGGAGTACAAGGAGCGCTTCAATGACATCCTGGCACGCCACCAGAGCTTTGTGCTTGTCGGAGAGACGGGCTCCGGGAAAACCACACAGATCCCCCAATGGTGTGTGGACATGGTGAAGGGCTTGGGTGGCCCCAAGAAGGCGGTGGCCTGTACCCAGCCCAGAAGGGTGGCAGCCATGAGCGTGGCCCAAAGGGTGGCCGACGAGATGGATGTCATGCTGGGCCAGGAGGTGGGCTACTCCATACGATTTGAGGACTGCAGCTCCGCCAAGACCATACTGAAGTATATGACAGACGGTATGTTGCTTCGGGAAGCCATGAACGATCCCTTGCTGGAGCGGTATGGCGTGATCATCCTGGATGAGGCCCACGAGAGAACGCTGGCCACGGACATCCTAATGGGAGTATTGAAGGAGGTGGTCCGACAGAGGTCAGACCTCAAGGTGATTGTGATGAGTGCCACATTAGACGCCGGGAAGTTCCAAGTGTACTTTGACAGCTGTCCGCTGCTGACCATTCCCGGACGCACACACCCCGTGGAGATCTTCTACACCCCTGAGCCGGAGCGGGACTACCTGGAAGCCGCCATCCGCACGGTCGTTCAGATCCACAtgtgtgaggaagaggagggggactgTCTGCTGTTCCTCACCGGACAAGAGGAAATTGACGAGGCCTGTAAACGGATCAAACGGGAGATCGACGACTTGGGACCTGAAGTCGGAGACATCAAAGTCATTCCACTATATTCCACACTGCCTCCCCAGCAGCAACAAAGAATCTTTGAGGCCGCACCCCCCAGGAAGCCCAGCGGTGCGATAGGAAGAAAGGTTGTGGTTTCGACAAACATTGCTGAGACATCCCTTACCATCGACGGAGTGGTGTTTGTGATCGATCCCGGTTTTGCCAAGCAAAAGGTGTACAATCCTCGTATCAGGGTGGAGTCTCTCCTGGTAACGGCGATCAGCAAAGCCTCGGCGCAGCAGAGGGCGGGCCGTGCCGGCAGGACACGGCCAGGGAAGACTTTCCGCCTCTACACTGAGAAAGCCTACAAGACCGAGATGCAGGACAACACGTATCCTGAGATTCTCCGGTCCAACTTGGGTTCTGTCGTGTTGCAGTTGAAGAAGCTGGGTATCGATGACCTGGTGCACTTTGACTTCATGGACCCACCAGCCCCGGAGACCCTGATGCGGGCGCTGGAGCTGCTCAACTACCTGGCGGCGCTCAACGACGACGGCGACCTGACAGAGCTGGGCTCCATGATGGCAGAGTTCCCGTTGGACCCACAGCTGGCCAAGATGGTGATCGCCAGCTGCGAGTTCAACTGCTCCAACGAGATCCTCTCCATCACCGCCATGCTGTCAGTCCCGCAGTGTTTCGTCCGCCCCACCGAGGCTAAGAAGGCGGCGGACGAGTCCAAGATGCGGTTCGCCCACATCGACGGAGACCACCTGACGCTCCTCAACGTCTACCACGCCTTCAAACAAAACCACGAGTCTACACAGTGGTGCTACGACAACTTTGTGAACTACCGTTCGCTGATGTCGGCCGACAACGTGCGCTCGCAGCTGTCCCGGATCATGGACCGCTTCAACCTGCCCCGGCGCAGCACCGAATTCACCAGCAGGGACTACTACATCAACATCCGCCGAGCGCTAGTCACAGGCTTTTTCATGCAGgTGGCTCATTTGGAGCGCACGGGCCATTATCTCACAGTCAAGGACAACCAGGTGGTCCAGCTACACCCCTCTACCGTCCTGGACCACAAGCCAGAGTGGGTGCTCTACAATGAGTTTGTCCTCACAACCAAGAACTACATTCGCACCTGCTCGGATATCAAACCGGAATGGCTGGTGAAGGTTGCTCCTCAGTACTACGAAATGGGCAACTTCCCACAGTGTGAAGCCAAGAGGCAGTTGGAGCGAATCGTTGCCAAACTCCAGACCAAGGAGTATTCCCAGTACTGATTAACAGCGACTGGAGAGAGGAAGACATCCTTGAAAGAGCTTGGCACAATTCATACTTTAAAAGTTGTATCCTATCTTCAATCTTAATGTTTCTCTCGATTCAAGATATGATTTTTATAACTTTTGTTTGTGGTTTTTCTGTCCATTCAATAGCAACGTGTATAACTGTAAGCATTTATGAAATTGATCTCAATGGTGAATATTAGGCTATTCTGATTAGAGATTTTCGAAAAGGAATTCAATTAACATGTTAAGCATGAGAATTCATGTGGATATTGTTATGTTCCTCTAGGAAATTGTGAACCCTGAGAAAGTGTACTTGCCTAGGTTGTCCTTGTTTCTTCAATAAAGGAGCTTCGACTTGAATAAAACCATGAATAATAGCTCATGGTCTTTGATTGTCTACTGGTACGGGAATTACTACTAAAAAACATGTTATGGGTCTAATCCTAGAAGTACATATAGAATCCCTATTCGTTTAGTGACCTCTGTGGGTCAAGTAGGCCCATGAAGATTTGTCATAACTTTGATCATGTGTTTATACCACATTAAAAGGTAATACAACTA

Function

NR:

description
PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1

GO: NA

KEGG:

id description
K12820 DHX15, PRP43; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933375.1 False 2924 mRNA 0.53 15 53758834 53773112
XM_036933376.1 False 2931 mRNA 0.53 14 53759269 53773112
XM_021619044.2 True 3003 mRNA 0.52 14 53760140 53773112
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534278 ccdc149 coding upstream 17595 53719606 ~ 53741239 (+)
LOC110534277 lgi2 coding upstream 39924 53708382 ~ 53718910 (+)
LOC110534276 LOC106602715 coding upstream 111123 53615925 ~ 53647711 (+)
LOC110534273 LOC106602713 coding upstream 158567 53561543 ~ 53600267 (+)
LOC110534272 LOC106602712 coding upstream 204831 53522853 ~ 53554003 (+)
LOC110534281 LOC106602720 coding downstream 23612 53796724 ~ 53857235 (+)
primpol primpol coding downstream 105775 53878887 ~ 53902069 (+)
helt helt coding downstream 204274 53977386 ~ 53980090 (+)
slc25a4 LOC100194655 coding downstream 305128 54078240 ~ 54081328 (+)
trnar-ucu-4 NA coding downstream 327585 54100697 ~ 54100788 (+)
G902847 NA non-coding upstream 70603 53687929 ~ 53688231 (+)
G902841 NA non-coding upstream 80446 53678029 ~ 53678388 (+)
G902837 NA non-coding upstream 93565 53665038 ~ 53665269 (+)
G902834 NA non-coding upstream 95119 53663461 ~ 53663715 (+)
G902879 NA non-coding downstream 941 53774053 ~ 53774928 (+)
G902881 NA non-coding downstream 6124 53779236 ~ 53779459 (+)
G902901 NA non-coding downstream 129059 53902171 ~ 53904223 (+)
G902999 NA non-coding downstream 250586 54023698 ~ 54024049 (+)
G902840 LOC106602714 other upstream 84023 53670120 ~ 53674811 (+)
G902707 NA other upstream 239046 53516107 ~ 53519788 (+)
LOC110534253 hinfp other upstream 1223184 52532434 ~ 52542498 (+)
G901849 LOC106602874 other upstream 1283469 52450218 ~ 52475365 (+)
G898894 LOC106603005 other upstream 3721149 50034990 ~ 50037685 (+)
G904621 LOC106567469 other downstream 1457787 55230899 ~ 55231255 (+)
G904663 NA other downstream 1522125 55295237 ~ 55296054 (+)
G906606 LOC100136012 other downstream 2883187 56656299 ~ 56656552 (+)
LOC110534329 LOC106602762 other downstream 3216892 56953710 ~ 56991150 (+)

Expression

LOC110534280(LOC106602719) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC110534280(LOC106602719) Expression in each Bioproject

Bar chart with 21 bars.
LOC110534280(LOC106602719) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network