casp3a (LOC106602722)


Basic Information

Item Value
gene id casp3a
gene name LOC106602722
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 53872239 ~ 53878829 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021619054.2
TTGTTTACTCCGGACGCTACTATTGGTTGGTTGCGGACTGTTGTTTGTAACAAAGAACTATAGGAAGACATGTGCATACAATATATTGGCTTGATATAAGGGTGGCCATTTGCACGGTCTGACCAAAACTTTACTACCAACATTTTTATATAGTCACTGACATTTGTTTGAAATTCGCAGAATACCATGTCAGCAGCAAACGATTTGAGTGCCGGGGACTGCGTTGACGCTAGGCGGGGCGATGGACAAGAGTCAGAGGGCCCCTGTGGTGGCTCTGGGTCTATGCAGGTGGATGCCAAGCCTCAGTCCCATAGCTTCAGGTACAGCCTCAGCTACCCCAGCATTGGCCAGTGTATCATCATTAACAACAAGAACTTTGACAGAAGAACAGGTATGAATGTACGCAATGGCACAGATGTGGATGCAGGCAACGTGATGAAGGTGTTTGGGAAACTGGGTTATAAGGTGAAGGTTTACAATGACCAGAAAGTGGACCAGATCAAGCATGTTTTAACCACAGCCTCCAAGGAGGACCACAGCTGCTCCGCTTCGTTCGTGTGTGTCCTGCTGAGTCACGGGGATGATGGCGTGTTCTTCGGGACGGATGCCTCAATCGAGCTCAAGAGCCTCACCAGCCTGTTCCGGGGCGACCGCTGCAACTCGCTGGTGGGCAAGCCCAAACTCTTCTTCATCCAGGCTTGCAGAGGTACTGATCTGGACGGGGGCATCGAGGCAGACAGCAGTTCAGATGGGAGTTCAACCAAGATCCCTGTGGAAGCAGACTTCCTCTATGCCTACTCCACAGCTCCAGGCTACTACTCATGGAGAAACACTCAGACTGGCTCCTGGTTTATCCAATCTCTGTGTGAGATGATTGGCAAGTACAGCAAAGAGCTGGAGGTCCAACACATCCTGACCCGGGTCAACCACAAGGTGGCGACAGAGTTTGAGTCTGCGTCAAACTCTCCCGGCTTCGATGCCAAGAAGCAGATCCCCTGCATTGTATCAATGCTGACCAAAGAGATGTACTTTACATCCTGAAATGAGAAAGGTTTGAAGAAGCTCCTTatttgcctggtcccagattggTTTTAGCTGTCTCGCCAACTCCTATGGTCTGTCTCGCCACTCCTATGGTCACACTCCTGGTACCAGCTTCTATCTGAGTGAGGGCAATAgatgtgtgtttgttttggttgtggaTTGTATTAGCTAAATTTTTAACACCACTGCTCAATCACTCTAGCTCAAGTTGGACTTGGTTTAAACTTGTAGGCTTAAGTATCACATTTTATGTTGGAGGTTGAAACCTCTGTCATGCTTTCAGCCTGATGTCAGGAAGTTGACTCTTCTTCATTGTAGGGGTCAGTTCACATTTCAATTCCATCAACTGAGGAAGTGTGAAATCCTAATAGTAAATGTTAAATTTAAATAACTTCCTAAATGCACTGATTGATTTGAAagttgaattgaccccaaccctgtttCTTACTGAATGATCCCTTGTGTGTAAAGTTTAACGGAGGATGTGTATAACGTTTTGGGAGTAGATTGCAGGGGTAGTGTGTAGTAATCAAATCGTGGATGTGCAACTCCTCTACAAGCACCAGCATTTCTTCCTAATTTTTctttaaacattttatttggtTATTTTTACAATGTCTAGAACCACACATTTTGTTGGATACTTGAATGAGTAGTCAAAGTGCATTTCTGAAGGGATTATGTTACATTTGTCTTTTGTGTGGGTTTAAATTaatgatattttttttaattgccgGATATTGTGTAGGTTCGTTAGTTATTCTGTGAAAAAAAACAATCCTGTTAAATTAATTCTGCAGCAATAAGGCTTGCTTGCCCTTCCGCCTTCTTTCAGTCCGCTCCAAAGTGGGTCAATTGAAAGCTCTTCCTGGCCTGAACATGACCAAATGCTTACTCTGTTTGTAGGTTAAAAACATTTTCTCTTGTCCTGGCGTAACAAATGTGTGTGGTATGTTGATAGGATGTGTATGCTGATAGACAGGATGTGTACTCTCTAACTTGGCAGAGACATTTTGTCTATATATTAAAGGCCCAGTTGTAGAAGCTTAAAGGTGCACTCCGGTAGTGATGTGCGGGGTCAGCTGTTTTATTCACCcgcccgcaattgctaataacccatctgcAACCACCCaactatatgtgataaagtgaaaatgcAATAAGATTTTCTGTGCAAAACATCAGTTTGACAGGAATTAAAGCTGTGAAAAATGA
>TU1027855
TTGTTTGTAACAAAGAACTATAGGAAGACATGTGCATACAATATATTGGCTTGATATAAGGGTGGCCATTTGCACGGTCTGACCAAAACTTTACTACCAACATTTTTATATAGTCACTGACATTTGTTTGAAATTCGCAGAATACCATGTCAGCAGCAAACGATTTGAGTGCCGGGGACTGCGTTGACGCTAGGCGGGGCGATGGACAAGAAGGGCCCCTGTGGTGGCTCTGGGTCTATGCAGGTGGATGCCAAGCCTCAGTCCCATAGCTTCAGGTACAGCCTCAGCTACCCCAGCATTGGCCAGTGTATCATCATTAACAACAAGAACTTTGACAGAAGAACAGGTATGAATGTACGCAATGGCACAGATGTGGATGCAGGCAACGTGATGAAGGTGTTTGGGAAACTGGGTTATAAGGTGAAGGTTTACAATGACCAGAAAGTGGACCAGATCAAGCATGTTTTAACCACAGGAGGACCACAGCTGCTCCGCTTCGTTCGTGTGTGTCCTGCTGAGTCACGGGGATGATGGCGTGTTCTTCGGGACGGATGCCTCAATCGAGCTCAAGAGCCTCACCAGCCTGTTCCGGGGCGACCGCTGCAACTCGCTGGTGGGCAAGCCCAAACTCTTCTTCATCCAGGCTTGCAGAGGTACTGATCTGGACGGGGGCATCGAGGCAGACAGCAGTTCAGATGGGAGTTCAACCAAGATCCCTGTGGAAGCAGACTTCCTCTATGCCTACTCCACAGCTCCAGGCTACTACTCATGGAGAAACACTCAGACTGGCTCCTGGTTTATCCAATCTCTGTGTGAGATGATTGGCAAGTACAGCAAAGAGCTGGAGGTCCAACACATCCTGACCCGGGTCAACCACAAGGTGGCGACAGAGTTTGAGTCTGCGTCAAACTCTCCCGGCTTCGATGCCAAGAAGCAGATCCCCTGCATTGTATCAATGCTGACCAAAGAGATGTACTTTACATCCTGAAATGAGAAAGGTTTGAAGAAGCTCCTTatttgcctggtcccagattggTTTTAGCTGTCTCGCCAACTCCTATGGTCTGTCTCGCCACTCCTATGGTCACACTCCTGGTACCAGCTTCTATCTGAGTGAGGGCAATAgatgtgtgtttgttttggttgtggaTTGTATTAGCTAAGTTGATAGGATGTGTATGCTGATAGACAGGATGTGTACTCTCTAACTTGGCAGAGACATTTTGTCTATATATTAAAGGCCCAGTTGTAGAAGCTTAAAGGTGCACTCCGGTAGTGATGTGCGGGGTCAGCTGTTTTATTCACCcgcccgcaattgctaataacccatctgcAACCACCCaactatatgtgataaagtgaaaatgcAATAAGATTTTCTGTGCAAAACATCAGTTTGACAGGAATTAAAGCTGTGAAAAATGACCTAACATGTTTCGGCTGCA

Function

NR:

description
caspase-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021619054.2 False 2259 mRNA 0.44 6 53872259 53878829
TU1027855 True 1445 TUCP 0.48 7 53872239 53878789

Neighbor

gene id symbol gene type direction distance location
LOC110534279 sod3 coding downstream 120203 53748577 ~ 53752056 (-)
LOC110534275 LOC106602714 coding downstream 197165 53651962 ~ 53675094 (-)
LOC110534271 LOC106602804 coding downstream 352411 53516324 ~ 53519848 (-)
LOC110534268 LOC106602801 coding downstream 452868 53390041 ~ 53419391 (-)
LOC118966634 LOC106602857 coding downstream 746150 53114089 ~ 53126109 (-)
acsl1a acsl1 coding upstream 23342 53902171 ~ 53964730 (-)
si:ch211-197n1.2 LOC106602724 coding upstream 111812 53990641 ~ 54076311 (-)
cfap97 cfap97 coding upstream 203338 54082166 ~ 54111277 (-)
LOC118936707 NA coding upstream 235080 54113909 ~ 54116812 (-)
ufsp2 ufsp2 coding upstream 270854 54149683 ~ 54168747 (-)
G903616 LOC106602720 non-coding downstream 24974 53844745 ~ 53847285 (-)
G903567 NA non-coding downstream 93474 53778561 ~ 53778785 (-)
G903564 NA non-coding downstream 98156 53773504 ~ 53774103 (-)
G903561 LOC105357480 non-coding downstream 100347 53770622 ~ 53771912 (-)
G903543 NA non-coding downstream 131058 53740261 ~ 53741201 (-)
G903644 NA non-coding upstream 66551 53945380 ~ 53950435 (-)
G903669 NA non-coding upstream 107065 53985894 ~ 53986712 (-)
G903698 NA non-coding upstream 144960 54023789 ~ 54024095 (-)
G903707 NA non-coding upstream 154357 54033186 ~ 54033431 (-)
G903710 NA non-coding upstream 157548 54036377 ~ 54036811 (-)
G902519 NA other downstream 943857 52902194 ~ 52937648 (-)
G900807 NA other downstream 2416317 51455500 ~ 51455942 (-)
G900070 NA other downstream 2890509 50970763 ~ 50981750 (-)
G899739 LOC106602890 other downstream 3122026 50743158 ~ 50750233 (-)
G899727 NA other downstream 3150656 50720986 ~ 50721603 (-)
G903619 primpol other upstream 715 53879544 ~ 53883773 (-)
G904991 NA other upstream 1400670 55279499 ~ 55280341 (-)
LOC110534325 NA other upstream 1648696 55527525 ~ 55528458 (-)
G905177 LOC106604999 other upstream 1650037 55528866 ~ 55529192 (-)

Expression


Co-expression Network