LOC110534932 (LOC106602785)


Basic Information

Item Value
gene id LOC110534932
gene name LOC106602785
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 54510988 ~ 54516812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934582.1
ATGTTGGTTGGCTGAAATCTCATCTGACACGGTTTAAAAGCAGAGATAGATCTCTGCACTCCATATTCCTCATCTATACTGGTATCACCAAAGGTTCTCCTTTGAAAATGAAGATCACCATTATGTGCCTTTGTTTGGCCAGCTCAATATCTGCTGCTCCACGTCAACCTTACTTCAATTACTTGCCCCACTATGGGGATCCAAGGCAATCAGGACCACCCACACAAGTGAATGAAGGCCTCTACCCAGCAGGCCAGCCTTACCCTCGGCCTGGACTCAACGGCCCTGTCAGCATGGAAATAGTGTTTCCACAGAGATTCCCTGGATGGTCTACTGGTGGCCAGATCAATGGACCACAGTCCTATCCCTCTCAAGCCTTCATCAAATATTCCCTACCTAAGGCCCCAGGAAGAAAGAGTGTAGAAATTTACTACCCCTATGACTTTGTGCAGCAAAAGATGATGCCAAATATCCCTCAGATGCCACAGATTCCAAACCTGTTCCCGAATGAATACCAACCACAAACTGTGCCACAGCAAAGACCCAATATCCCATTCCCCCCATACAACTCTCAACTTCCTCATTCCCAGGATCCTTTGCAGCCAGCTCAGCAGGAGCAGACAGTGCAGACAGGCCAGGTACCTCATGTGCAACCATAGAATGGGAACTGAATTTACCAGCTTGAAGGAAGTGCAAAGTCTGCCGACCCAGAGAAGACCAGATGATTTGCTGCTTCAATATGGCCTATTGATATTAATTGGGGTATTTACAGTAGTATGGTTATGAGTATCAATGTAGAGTGTTAATCTACTGTCCTTTAGAGTTTTTCCCCTTGAAGTTTCTAGCGAAGGCTATTGTAATTAGTATAATAAGCATGCATCATTGATATTACAGTAGGCAATAGAGAGTATGGGTGGACATTATCTGGGTGGACATGCAATCTTTTCTTTGCTACATTTAACTTAAGCCATGTATTTTAGTAAAGGCAATTAAAGTATGTTTTACTAGCAATCATTGAGTGTTTTCCCTGTATAATGTCTTTGTGTGAATTTGAAGAGTAGAATAAGTTATTTGATTAAACAGTTCATTTTATTAAATTATTCTTTAACAGTACAATATCTGTAGGTGTTCATTTCAGTTGAACAGTGTGGATCGATGGATATCTGTTGATAATAACAATCAATGTCCATTAGTTTATGGACTTACTTTACTGCAAAAGGAGTTACCATTAACTGTAATGCTTCATGGCCATAAAAGTCAAAAATGTATAATAAAGTTTTGAATTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934582.1 True 1289 mRNA 0.41 12 54510988 54516812

Neighbor

gene id symbol gene type direction distance location
LOC110534304 LOC106602785 coding downstream 28915 54476106 ~ 54493725 (-)
enam LOC106602737 coding downstream 43899 54464629 ~ 54467089 (-)
synpo2b LOC106602736 coding downstream 76970 54421742 ~ 54434018 (-)
myoz2b myoz2 coding downstream 93036 54402866 ~ 54417952 (-)
usp53b LOC106602734 coding downstream 109911 54335351 ~ 54401077 (-)
scpp7 NA coding upstream 7968 54524780 ~ 54527686 (-)
LOC118966636 NA coding upstream 140525 54657337 ~ 54659796 (-)
odam LOC106602794 coding upstream 152099 54668911 ~ 54671854 (-)
scpp9 NA coding upstream 159342 54676154 ~ 54677792 (-)
LOC110534935 LOC106602741 coding upstream 164754 54681566 ~ 54689509 (-)
G903956 NA non-coding downstream 40662 54470090 ~ 54470326 (-)
G903955 NA non-coding downstream 41650 54469083 ~ 54469338 (-)
G903940 NA non-coding downstream 63719 54447059 ~ 54447269 (-)
G903934 NA non-coding downstream 71165 54439536 ~ 54439823 (-)
G904133 NA non-coding upstream 56582 54573394 ~ 54576436 (-)
G904165 NA non-coding upstream 120810 54637622 ~ 54637847 (-)
G904184 NA non-coding upstream 145629 54662441 ~ 54662672 (-)
G904204 NA non-coding upstream 158644 54675456 ~ 54676066 (-)
cfap97 cfap97 other downstream 407583 54082166 ~ 54111277 (-)
G903619 primpol other downstream 627215 53879544 ~ 53883773 (-)
casp3a LOC106602722 other downstream 632199 53872239 ~ 53878829 (-)
G902519 NA other downstream 1582586 52902194 ~ 52937648 (-)
G900807 NA other downstream 3055046 51455500 ~ 51455942 (-)
G904991 NA other upstream 762687 55279499 ~ 55280341 (-)
LOC110534325 NA other upstream 1010713 55527525 ~ 55528458 (-)
G905177 LOC106604999 other upstream 1012054 55528866 ~ 55529192 (-)
G906663 NA other upstream 2202571 56690485 ~ 56751990 (-)
G908286 NA other upstream 2941428 57458240 ~ 57890617 (-)

Expression


Co-expression Network