scpp9


Basic Information

Item Value
gene id scpp9
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 54676154 ~ 54677792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989359.1
ATGGCCACCATCTTCAATGTCAATGCTGGCAAGAAACTGAGACTGCTGGCAGGTCTAAATGGTGGAATTGTGTCTGGGCTTAACCCTGGACTGGTGGTGGGGGGCCTGAACCCTGGCGTCCTCCCTGGTGGCACTGGGTTGATTGGGCAGCCTCAGTTTGCCCAGATGGTCCCAGGTGTCCCCACGTATGTCATGCAACCACAAGCTGTTCCCAATGGTCCCTATGGTTTCCCCAATGTCGGGATGCTGCAGCCTCAACTGTTCCCTAACTTCCCTGGGCAGTACCAGTATCCTGCCCCACCAGCTAATGGGCTGCCTTACTACATGGGTGTCCCTCAAATGGCAGGAATGAATCCTCCACAACAGCAAGTCATGGGAGTCCAAGGTGCAGGTGGGATTCCCATGATGCAACAGCAGCAGCCACAGCAGGGTCCTCAACAAGCAGAGCCCGTGAGAAGATTCAAGGTACAGTAATGGTCATTGACTGTACAGTACATGTGGCTCATGGTCAATAGTGTATTTCAATCTGTAATTGACTCTGTGTAAGAAAAGGAATCTACAGTAGTTAATG

Function

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989359.1 True 571 mRNA 0.52 6 54676154 54677792

Neighbor

gene id symbol gene type direction distance location
odam LOC106602794 coding downstream 4300 54668911 ~ 54671854 (-)
LOC118966636 NA coding downstream 16358 54657337 ~ 54659796 (-)
scpp7 NA coding downstream 148468 54524780 ~ 54527686 (-)
LOC110534932 LOC106602785 coding downstream 159342 54510988 ~ 54516812 (-)
LOC110534304 LOC106602785 coding downstream 194081 54476106 ~ 54493725 (-)
LOC110534935 LOC106602741 coding upstream 3774 54681566 ~ 54689509 (-)
sparcl1 LOC106602739 coding upstream 12277 54690069 ~ 54705858 (-)
LOC100135808 LOC100135808 coding upstream 38537 54716329 ~ 54717659 (-)
LOC118937069 NA coding upstream 45358 54723150 ~ 54723202 (-)
fam193a LOC106610017 coding upstream 72280 54750072 ~ 54779983 (-)
G904204 NA non-coding downstream 88 54675456 ~ 54676066 (-)
G904184 NA non-coding downstream 13482 54662441 ~ 54662672 (-)
G904165 NA non-coding downstream 38307 54637622 ~ 54637847 (-)
G904133 NA non-coding downstream 99718 54573394 ~ 54576436 (-)
G904258 NA non-coding upstream 29524 54707316 ~ 54707766 (-)
G904263 NA non-coding upstream 36514 54714306 ~ 54714515 (-)
G904372 NA non-coding upstream 103669 54781461 ~ 54781723 (-)
cfap97 cfap97 other downstream 572749 54082166 ~ 54111277 (-)
G903619 primpol other downstream 792381 53879544 ~ 53883773 (-)
casp3a LOC106602722 other downstream 797365 53872239 ~ 53878829 (-)
G902519 NA other downstream 1747752 52902194 ~ 52937648 (-)
G900807 NA other downstream 3220212 51455500 ~ 51455942 (-)
G904991 NA other upstream 601707 55279499 ~ 55280341 (-)
LOC110534325 NA other upstream 849733 55527525 ~ 55528458 (-)
G905177 LOC106604999 other upstream 851074 55528866 ~ 55529192 (-)
G906663 NA other upstream 2041591 56690485 ~ 56751990 (-)
G908286 NA other upstream 2780448 57458240 ~ 57890617 (-)

Expression


Co-expression Network