LOC100135808 (LOC100135808)


Basic Information

Item Value
gene id LOC100135808
gene name LOC100135808
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 54716329 ~ 54717659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617171.2
TCCCAGTCGAGCACATGGGCAGAGGTATAAAAGTTAATGGAGGGAGCAATAGGGTCTACACACTGAACACTGACCAGGCTTCCACCAAGATACACAACATACGCAGGATATTGCCACCCGTCACTAAAATGTGCTTGTTGAAATCAACTGGACTATTCCTCATCCTGTCCGCACTTCTAGTCATCGCAGACTCTTATCCAAACAGTGACAAGACAAACATGGGCTGTGAGGAATGCACACTGAAGCCGAACACAATCTTCCCCAACATCATGCAGTGTACAGGCTGTTGCTTCTCCAGAGCTTATCCAACCCCACTACGGTCAAAGCAAACCATGCTGGTTCCCAAGAACATCACCTCTGAAGCCACATGCTGCGTTGCAAAAGAAGGGGAAAGGgTCACCACCAAGGATGGCTTCCCGGTGACGAACCACACAGAGTGTCACTGCAGCACCTGCTATTACCATAAATCATAAACTGTCTGTATGGGCTGGAAATCTCCTTGTTTTAGAAGTAAAAGCTTGGCAACAGATCATATATTTTGCACAACTTATTCCTGAAGTTCCTTGTGTTTTAAGAGAAATCACATATTAGGAAATCATTGTGATCCACAAAATATAATATTCTACGGATAATATTTATAGTGCTCTTATGGTAGCAATGATATAAAGTTGTACTCCTGTACTGTGTTAatcagtgtagactttactgtatGAATTGAATACTGATTAAAATGCCAATTAACATGATTGCA
>NM_001124204.1
ATGTGCTTGTTGAAATCAACTGGACTATTCCTCATCCTGTCCGCACTTCTAGTCATCGCAGACTCTTATCCAAACAGTGACAAGACAAACATGGGCTGTGAGGAATGCACACTGAAGCCGAACACAATCTTCCCCAACATCATGCAGTGTACAGGCTGTTGCTTCTCCAGAGCTTATCCAACCCCACTACGGTCAAAGCAAACCATGCTGGTTCCCAAGAACATCACCTCTGAAGCCACATGCTGCGTTGCAAAAGAAGGGGAAAGGgTCACCACCAAGGATGGCTTCCCGGTGACGAACCACACAGAGTGTCACTGCAGCACCTGCTATTACCATAAATCATAAACTGTCTGTATGGGCTGGAAATCTCCTTGTTTTAGAAGTAAAAGCTTGGCAACAGATCATATATTTTGCACAACTTATTCCTGAAGTTCCTTGTGTTTTAAGAGAAATCACATATTAGGAAATCATTGTGATCCACAAAATATAATATTCTACGGATAATATTTATAGTGCTCTTATGGTAGCAATGATATAAAGTTGTACTCCTGTACTGTGTTAatcagtgtagactttactgtatGAATTGAATACTGATTAAAATGCCAATTAAC

Function

NR:

description
gonadotropin alpha subunit isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617171.2 False 751 mRNA 0.42 4 54716329 54717659
NM_001124204.1 True 614 mRNA 0.41 3 54716338 54717400

Neighbor

gene id symbol gene type direction distance location
sparcl1 LOC106602739 coding downstream 10471 54690069 ~ 54705858 (-)
LOC110534935 LOC106602741 coding downstream 26820 54681566 ~ 54689509 (-)
scpp9 NA coding downstream 38537 54676154 ~ 54677792 (-)
odam LOC106602794 coding downstream 44475 54668911 ~ 54671854 (-)
LOC118966636 NA coding downstream 56533 54657337 ~ 54659796 (-)
LOC118937069 NA coding upstream 5491 54723150 ~ 54723202 (-)
fam193a LOC106610017 coding upstream 32413 54750072 ~ 54779983 (-)
LOC110534316 NA coding upstream 259604 54976939 ~ 54985945 (-)
LOC110534319 LOC106602749 coding upstream 434877 55152536 ~ 55155586 (-)
dchs2 dchs2 coding upstream 459195 55176854 ~ 55230032 (-)
G904263 NA non-coding downstream 1814 54714306 ~ 54714515 (-)
G904258 NA non-coding downstream 8563 54707316 ~ 54707766 (-)
G904204 NA non-coding downstream 40263 54675456 ~ 54676066 (-)
G904372 NA non-coding upstream 63802 54781461 ~ 54781723 (-)
G904374 NA non-coding upstream 64883 54782542 ~ 54782859 (-)
G904383 LOC106581475 non-coding upstream 78069 54795728 ~ 54795972 (-)
G904397 NA non-coding upstream 117549 54835208 ~ 54835438 (-)
G904398 NA non-coding upstream 117946 54835605 ~ 54842345 (-)
cfap97 cfap97 other downstream 612924 54082166 ~ 54111277 (-)
G903619 primpol other downstream 832556 53879544 ~ 53883773 (-)
casp3a LOC106602722 other downstream 837540 53872239 ~ 53878829 (-)
G902519 NA other downstream 1787927 52902194 ~ 52937648 (-)
G900807 NA other downstream 3260387 51455500 ~ 51455942 (-)
G904991 NA other upstream 561840 55279499 ~ 55280341 (-)
LOC110534325 NA other upstream 809866 55527525 ~ 55528458 (-)
G905177 LOC106604999 other upstream 811207 55528866 ~ 55529192 (-)
G906663 NA other upstream 2001724 56690485 ~ 56751990 (-)
G908286 NA other upstream 2740581 57458240 ~ 57890617 (-)

Expression


Co-expression Network